Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013008.1 Kokia drynarioides strain JFW-HI SEQ_128026, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 640

Length: 1068
ACGTcount: A:0.26, C:0.08, G:0.12, T:0.22

Warning! 339 characters in sequence are not A, C, G, or T


Found at i:112 original size:11 final size:11

Alignment explanation


    Indices: 96--126  Score: 53
    Period size: 11  Copynumber: 2.8  Consensus size: 11

         86 CAATTAAGCT

                       
         96 AGTTTCTTCCA
          1 AGTTTCTTCCA

                       
        107 AGTTTCTTCCA
          1 AGTTTCTTCCA

             *       
        118 AATTTCTTC
          1 AGTTTCTTC

        127 AAGATTAGTG


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.19, C:0.26, G:0.06, T:0.48


Consensus pattern (11 bp):   
AGTTTCTTCCA
Done.