genome.fa.s13009.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013009.1 Kokia drynarioides strain JFW-HI SEQ_128027, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42989

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123--203	17	4.6	17	80	4	90	50	2	2	44	1.28
123--202	35	2.3	34	84	4	97	51	2	2	43	1.28
1029--1054	13	2.0	13	100	0	52	15	0	7	76	0.99
3055--3170	6	20.0	6	70	11	82	43	2	2	50	1.29
3041--3140	17	5.4	17	73	19	67	38	3	4	55	1.34
3041--3125	41	2.1	40	86	2	116	37	3	2	56	1.29
3919--3983	13	4.9	13	75	7	60	58	4	0	36	1.19
3932--4005	3	24.0	3	73	5	58	59	4	1	35	1.25
5068--5403	30	11.4	28	73	13	112	33	26	3	36	1.75
5138--5653	59	8.7	58	79	7	506	31	25	4	39	1.75
5138--5661	29	17.8	29	69	16	258	31	25	4	38	1.76
5551--5681	29	4.6	29	79	7	133	32	25	6	34	1.83
17231--17343	49	2.3	49	87	3	167	40	22	23	13	1.89
17385--17413	13	2.2	13	100	0	58	41	6	44	6	1.58
17289--17506	111	2.0	108	87	2	310	38	20	27	13	1.90
17497--17711	57	3.9	57	80	9	266	38	20	27	13	1.90
17618--17739	49	2.5	49	80	0	145	38	21	27	13	1.90
18240--18360	6	20.7	6	72	11	99	44	2	2	50	1.28
18261--18344	17	4.9	17	81	7	98	40	2	3	53	1.31
18226--18311	41	2.1	41	88	0	127	38	3	2	55	1.29
18327--18357	13	2.4	13	94	0	53	48	3	0	48	1.17
19112--19175	28	2.3	28	83	5	76	56	4	0	39	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19112--19237	13	9.2	13	67	14	58	55	3	1	38	1.28
20196--20522	59	5.6	57	76	9	261	33	25	3	37	1.72
20266--20424	30	5.4	29	73	15	139	32	28	3	35	1.75
20312--20461	30	5.1	30	74	14	141	32	27	3	37	1.73
20196--20542	118	2.9	118	79	10	345	33	25	3	37	1.72
21615--23167	792	2.0	794	81	5	1881	33	15	12	37	1.86
29419--29774	88	4.1	88	79	8	333	32	4	26	36	1.76
29701--29774	28	2.6	30	77	14	75	36	4	25	33	1.75
29559--29829	111	2.4	114	82	5	325	32	4	26	36	1.77
29441--29951	29	17.6	30	71	14	210	33	4	25	36	1.76
29419--29831	29	14.4	28	73	13	263	31	4	26	37	1.77
31588--31678	17	5.4	17	74	0	83	51	7	2	38	1.43
32043--32963	209	4.4	209	85	2	1170	22	21	17	38	1.93
33154--33536	49	7.8	50	73	5	253	18	32	17	32	1.94
33229--33542	146	2.1	149	81	3	357	18	32	15	32	1.93
33154--33535	50	7.7	50	74	1	288	18	32	17	31	1.94
34469--34524	25	2.4	23	77	16	62	8	12	0	78	0.96
39701--39769	29	2.4	29	87	0	93	40	10	23	26	1.86
39718--39774	29	2.0	29	96	0	105	35	10	22	31	1.88
39726--39934	29	7.1	27	77	12	148	33	4	25	36	1.76
39726--39934	58	3.6	57	79	8	190	33	4	25	36	1.76
39756--39934	29	6.1	30	80	9	149	31	3	26	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40962--41047	30	3.0	28	79	18	81	47	1	12	38	1.49
40994--41045	26	2.0	25	96	3	95	46	0	15	38	1.46
40994--41036	15	3.1	15	75	25	58	46	0	16	37	1.47
41537--41625	17	5.2	17	70	0	70	51	6	2	39	1.41

Tables:   1

The End!