genome.fa.s13015.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013015.1 Kokia drynarioides strain JFW-HI SEQ_128033, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47976

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11328--11363	17	2.1	18	90	10	58	41	0	0	58	0.98
12600--12653	6	9.0	6	85	0	63	40	1	0	57	1.09
12602--12659	18	3.2	18	82	0	80	44	1	0	53	1.10
13354--13427	31	2.4	29	80	12	78	50	4	2	43	1.35
13381--13441	31	2.0	31	83	6	79	44	4	4	45	1.46
13407--13469	18	3.2	19	76	14	74	52	1	3	42	1.27
14431--14798	29	12.5	29	75	9	307	34	27	2	35	1.71
14431--14776	59	5.8	58	81	4	361	34	26	2	35	1.72
14758--14820	28	2.2	29	81	10	76	31	28	4	34	1.78
14448--14818	59	6.3	58	79	6	185	34	28	3	33	1.73
15908--15934	12	2.2	12	100	0	54	22	7	29	40	1.81
25788--26261	206	2.3	207	76	5	481	37	18	22	21	1.94
26548--26617	6	12.0	6	77	11	56	40	1	1	57	1.17
26553--26618	17	3.8	17	85	2	87	42	1	1	54	1.18
26550--26623	34	2.1	36	87	5	107	43	1	1	54	1.17
27295--27368	31	2.4	29	80	12	78	50	4	2	43	1.35
27322--27382	31	2.0	31	83	6	79	44	4	4	45	1.46
27348--27410	18	3.2	19	76	14	74	52	1	3	42	1.27
28377--28835	30	15.7	28	75	10	323	34	29	3	32	1.73
28404--28835	59	7.4	59	83	2	514	34	29	2	32	1.72
28377--28835	29	15.7	29	78	6	417	34	29	3	32	1.73
28735--28883	30	5.1	29	77	12	103	31	30	4	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31758--31932	58	3.0	58	94	0	314	21	21	15	41	1.90
31984--32235	128	2.0	129	88	0	380	14	21	17	46	1.83
36000--36050	6	8.5	6	84	0	57	50	0	27	21	1.48
36000--36050	12	4.2	12	84	0	66	50	0	27	21	1.48
35995--36050	18	3.1	18	84	2	67	53	0	25	21	1.46
36154--36255	37	2.6	39	73	6	91	21	18	26	33	1.96
37904--37947	21	2.1	21	91	0	70	29	13	13	43	1.83
38032--38090	27	2.2	27	93	0	100	28	6	25	38	1.81

Tables:   1

The End!