Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013019.1 Kokia drynarioides strain JFW-HI SEQ_128037, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 763

Length: 1272
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27


Found at i:560 original size:19 final size:19

Alignment explanation


    Indices: 500--562  Score: 56
    Period size: 19  Copynumber: 3.3  Consensus size: 19

        490 AAAAGCAATC

                                
        500 AAACATAATCAAAGTAAAAA
          1 AAACATAATCAAAGT-AAAA

                   **     * ***
        520 AAACAT-CCCAAAGCATTC
          1 AAACATAATCAAAGTAAAA

                               
        538 AAACATAATCAAAGTAAAA
          1 AAACATAATCAAAGTAAAA

                  
        557 AAACAT
          1 AAACAT

        563 CCCAAAGCAA


Statistics
Matches: 30,  Mismatches: 12, Indels: 3
        0.67            0.27        0.07

Matches are distributed among these distances:
  18    7  0.23
  19   17  0.57
  20    6  0.20

ACGTcount: A:0.62, C:0.17, G:0.05, T:0.16


Consensus pattern (19 bp):   
AAACATAATCAAAGTAAAA

Found at i:566 original size:37 final size:38

Alignment explanation


    Indices: 491--579  Score: 153
    Period size: 37  Copynumber: 2.4  Consensus size: 38

        481 TGTTGAACCA

                                                  
        491 AAAGCAATCAAACATAATCAAAGTAAAAAAAACATCCC
          1 AAAGCAATCAAACATAATCAAAGTAAAAAAAACATCCC

                  *                               
        529 AAAGCATTCAAACATAATCAAAGT-AAAAAAACATCCC
          1 AAAGCAATCAAACATAATCAAAGTAAAAAAAACATCCC

                   *      
        566 AAAGCAACCAAACA
          1 AAAGCAATCAAACA

        580 AGAAAAATAG


Statistics
Matches: 48,  Mismatches: 3, Indels: 1
        0.92            0.06        0.02

Matches are distributed among these distances:
  37   25  0.52
  38   23  0.48

ACGTcount: A:0.60, C:0.22, G:0.06, T:0.12


Consensus pattern (38 bp):   
AAAGCAATCAAACATAATCAAAGTAAAAAAAACATCCC
Done.