genome.fa.s13022.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013022.1 Kokia drynarioides strain JFW-HI SEQ_128040, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  273959

Tables:   1   

This is table  1  of  1  ( 112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3262--3453	96	2.0	96	100	0	384	30	13	20	35	1.91
4962--4999	18	2.1	18	90	9	60	34	0	13	52	1.40
5431--5465	16	2.2	16	100	0	70	82	0	5	11	0.82
6327--6382	25	2.2	25	93	0	94	16	0	21	62	1.32
7756--7966	108	2.0	108	90	3	336	40	13	11	34	1.81
8296--8423	31	4.3	29	71	10	89	61	2	10	25	1.41
8414--8447	17	2.0	17	94	0	59	64	0	2	32	1.08
13593--13686	25	3.8	25	91	0	143	26	21	21	30	1.98
16604--16661	24	2.4	24	85	0	80	18	41	1	37	1.61
19069--19105	19	1.9	20	88	5	58	40	18	5	35	1.74
30951--31029	38	2.1	38	97	0	149	26	17	13	41	1.87
41594--41644	21	2.4	22	84	12	70	54	0	3	41	1.19
44275--44503	43	5.3	43	80	8	202	31	25	17	25	1.97
44388--44532	43	3.4	42	82	1	155	31	28	16	24	1.96
50717--50743	14	1.9	14	100	0	54	44	0	0	55	0.99
50708--50913	58	3.5	58	68	12	175	41	0	7	50	1.34
50610--50990	121	3.1	121	92	2	615	41	0	7	50	1.37
52887--52929	21	2.0	21	82	8	52	51	23	6	18	1.70
54853--55016	80	2.1	79	94	1	283	41	1	9	46	1.47
70541--70703	28	5.8	28	85	0	209	27	24	15	32	1.95
70625--70669	15	3.1	15	70	23	51	24	28	13	33	1.93
70541--70700	84	1.9	85	86	1	232	28	25	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72635--72673	14	2.7	14	84	4	51	30	0	2	66	1.05
74248--74306	30	2.0	30	83	6	75	62	5	0	32	1.17
83275--83338	26	2.4	27	85	10	80	37	12	25	25	1.91
84407--84452	24	1.9	24	82	8	58	45	0	0	54	0.99
84883--84942	28	2.1	28	96	0	111	30	10	18	41	1.83
86643--86819	88	2.0	88	97	0	336	30	26	17	25	1.97
89346--89394	25	2.0	25	88	8	73	0	28	2	69	1.00
89821--89941	45	2.7	45	80	6	129	22	28	4	43	1.74
90690--90740	26	2.0	26	81	14	61	15	0	37	47	1.46
90761--90819	22	2.6	22	75	2	64	20	0	28	50	1.48
94051--94105	24	2.3	24	90	0	83	27	9	10	52	1.66
94506--94542	18	2.1	18	90	10	58	54	0	0	45	1.00
94700--94773	38	1.9	39	88	2	114	47	16	2	33	1.61
95931--96328	202	2.0	200	95	1	724	46	13	11	27	1.78
97321--97371	19	2.7	20	75	9	61	35	0	0	64	0.94
97488--97521	12	2.7	13	86	9	52	67	0	0	32	0.91
101738--101771	2	17.0	2	100	0	68	50	0	0	50	1.00
102515--102957	41	10.5	41	83	5	384	32	10	29	27	1.90
102515--102957	84	5.2	82	82	4	384	32	10	29	27	1.90
102687--103042	43	8.5	43	84	3	361	33	10	26	28	1.90
102515--102992	125	3.8	125	82	4	424	33	10	28	27	1.90
102563--103032	166	2.8	168	81	5	454	33	10	28	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103679--103731	21	2.6	21	91	8	83	30	11	28	30	1.91
104034--104296	32	8.2	32	79	3	217	36	15	16	31	1.90
104064--104285	64	3.5	64	84	3	243	37	15	17	29	1.91
104148--104287	63	2.2	63	89	1	208	39	17	16	26	1.91
110105--110252	79	1.9	78	87	4	217	44	8	15	31	1.77
113421--113466	24	2.0	23	86	4	65	58	30	4	6	1.43
114370--114403	8	4.6	7	92	7	50	44	0	0	55	0.99
114370--114403	15	2.3	15	90	10	52	44	0	0	55	0.99
116165--116224	9	6.6	9	75	17	61	5	10	1	83	0.87
117130--117266	6	23.3	6	81	9	88	75	2	8	13	1.11
117175--117262	37	2.4	36	84	1	113	76	0	13	10	1.03
119417--119446	13	2.4	13	94	5	53	70	0	3	26	1.03
131362--131911	290	1.9	290	95	0	1001	30	20	14	34	1.93
136362--136387	2	13.0	2	100	0	52	50	0	0	50	1.00
136405--136430	2	13.0	2	100	0	52	50	0	0	50	1.00
137109--137263	80	1.9	80	89	0	238	24	20	24	30	1.99
139439--139471	16	2.1	16	100	0	66	39	30	18	12	1.87
139834--139887	18	3.0	18	91	0	90	50	27	5	16	1.68
140974--141024	23	2.3	22	79	3	57	50	1	7	39	1.42
143850--143875	7	3.7	7	100	0	52	15	0	0	84	0.62
144343--144394	22	2.5	21	80	17	56	30	0	1	67	1.02
144349--144402	24	2.4	24	75	9	60	31	0	1	66	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145394--145422	2	14.5	2	100	0	58	48	0	0	51	1.00
147373--147410	20	1.9	20	88	0	58	63	0	2	34	1.09
147378--147419	20	2.1	20	86	0	57	59	2	0	38	1.10
152976--153113	37	3.7	35	77	9	114	21	19	18	41	1.91
152979--153134	74	2.1	74	78	4	163	20	19	19	40	1.92
153275--153660	28	13.8	28	78	7	381	32	20	19	27	1.97
156554--156611	30	2.0	28	81	15	66	36	1	0	62	1.06
163103--163174	32	2.3	32	85	2	92	23	12	12	51	1.74
163357--163463	31	3.6	29	75	17	112	43	12	17	26	1.84
163348--163518	59	2.9	59	86	1	227	50	11	13	23	1.74
178109--178141	12	2.8	12	100	0	66	27	9	12	51	1.69
183445--183544	36	2.8	36	90	0	155	36	19	24	21	1.95
186922--187061	70	2.0	70	88	2	210	37	25	7	29	1.83
190479--190537	25	2.4	25	85	5	75	42	1	0	55	1.09
191017--191058	18	2.3	18	95	0	75	33	33	9	23	1.87
191278--191346	24	2.9	24	91	0	111	26	10	7	56	1.58
193293--193347	24	2.3	24	83	0	65	27	16	9	47	1.76
194662--194687	3	8.7	3	100	0	52	69	0	0	30	0.89
202952--203023	28	2.5	28	78	8	74	27	19	22	30	1.98
211375--211439	22	3.0	22	73	8	69	47	10	24	16	1.79
215429--215475	23	2.0	23	87	0	67	23	12	8	55	1.64
217713--217738	2	13.0	2	100	0	52	50	50	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222423--222464	20	2.1	20	100	0	84	35	16	9	38	1.81
222795--222828	17	2.0	17	100	0	68	52	0	5	41	1.25
224694--225120	59	7.3	58	78	8	291	37	3	25	33	1.73
224778--225113	30	11.4	29	70	11	186	37	2	26	33	1.72
224779--225194	59	7.1	59	77	7	328	37	3	25	34	1.72
229115--229200	22	3.9	22	86	7	68	40	22	23	13	1.89
229136--229227	22	4.1	23	86	6	118	35	20	30	13	1.91
235419--235465	22	2.1	22	92	7	78	46	21	21	10	1.81
240645--240812	87	1.9	87	90	0	264	32	26	14	26	1.94
241724--241754	2	15.5	2	100	0	62	51	0	0	48	1.00
247140--247184	22	2.0	22	100	0	90	35	17	8	37	1.81
254291--254374	43	2.0	43	100	0	168	26	16	11	45	1.82
259436--259516	22	3.7	22	85	8	103	6	4	20	67	1.31
259447--259537	44	2.1	44	81	4	103	7	4	17	70	1.28
259499--259632	44	2.9	46	79	10	139	8	5	21	64	1.40
259507--259608	23	4.5	22	73	18	68	6	5	19	67	1.35
259540--259640	44	2.3	44	87	3	141	7	5	20	65	1.40
261588--261657	31	2.4	28	81	11	77	20	5	14	60	1.54
262606--262642	14	2.4	16	86	8	51	59	2	0	37	1.12
266899--266968	23	3.0	23	89	2	104	25	11	21	41	1.86
266905--266986	23	3.5	23	83	5	67	29	9	20	40	1.85
267424--267468	3	15.0	3	100	0	90	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270536--270711	23	7.8	23	72	17	127	43	19	23	13	1.87
270575--270649	39	1.9	39	88	0	114	44	20	22	13	1.86

Tables:   1

The End!