Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013023.1 Kokia drynarioides strain JFW-HI SEQ_128041, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46737
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Warning! 50 characters in sequence are not A, C, G, or T
Found at i:486 original size:215 final size:211
Alignment explanation
Indices: 1--3881 Score: 3076
Period size: 215 Copynumber: 18.4 Consensus size: 211
* * * * *
1 ATTCAAGACGATCCATTCCTTC-AGCAATATAT-TGTACAGTCCGTGCTTGGGAAATCACATTAT
1 ATTCAAGACGATCCATTCCTTCGAGCAAT-TTTCTG-AAATTCCATGCTT-GGAAATCACATCAT
* * * * * * * * *
64 TAGGTCCAAATTGTTGTCATTCTATAAACTTCTTTCGGTTTTTCAATTAAAAACTTATTTAGGTG
63 T-TGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTG
* * * *
129 AGAATTGTTTCTCTATTCGTTCT----C-AAC---CGAACTTGACAAAGTTTTACGAGTACTTTT
127 AGAATTGTTTCTCTTTTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTT
*
186 ATAACTTTTGTTCATTAAAGT
192 ATAA-TTTTGTTCCTTAAAGT
* * * *
207 ATTCAAGACGATCGATTCCTTCGAGTAATTTTCTGTACAGTCCATGCTTGGGAAATCACATCATT
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG-AAATTCCATGCTT-GGAAATCACATCATT
* * * *
272 ATGTCTAAAAAGTTGTCATTTT-TGAAACTACTTCTGGTCTTCT-AATTAAAAATTTATTTAGTT
64 -TGTCTAAATAGTTGTCATTTTGT-AAACTACTTTTGGTCTT-TGAATTAAAAACTTATTTAGGT
* * *
335 GAGAATTGTTTCTCTTTTGGTTCTCGGTCGAACTTTTGAACTTGAAAAACTTTTACGAGTTAC-T
126 GAGAATTGTTTCTCTTTTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTT-CTT
*
399 TTATAATTTTGATTCCTTAAACT
190 TTATAATTTTG-TTCCTTAAAGT
** ** * *
422 ATTCAAGACGATCCATTCCTTCGAGCAATTTTAAGAGAATTGTATGCTCTAGAAATCGCATCATT
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGA-AATTCCATGCT-TGGAAATCACATCATT
* * * * * * * *
487 AAGTGTAAATAATTGCCATTATGTAAACAACTTTTGGTCTCTGAATTAAAAACTTTTTTAGGTGA
64 -TGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGA
* * * * * * * *
552 GAATAGTTTCTCTCTTGTTTCTAGGCCAAACTTCCGAAGTTGACAAACTTTTACGTGTTCTTTTA
128 GAATTGTTTCTCTTTTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTA
** *
617 TAACTTCAGTTCCTTACAGT
193 TAA-TTTTGTTCCTTAAAGT
* * * * * * *
637 AATCAAGACAAACCATTCCTTCGAGCAATTTTCTGAACATTCCAAGCTCAGGGAATCTCATCATT
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA-ATTCCATGCT-TGGAAATCACATCATT
* * *
702 TGGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAAATTATTTATGCGA
64 T-GTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGA
* * * *
767 GAATTGTTTCT-TTCTTCGTTCTCGGCCGAAATTT-AAACTTGACAAACATTTACGAGTTCTTTT
128 GAATTGTTTCTCTT-TTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTT
*
830 ATAACTTTTGTTCATTAAAGT
192 ATAA-TTTTGTTCCTTAAAGT
* * * *
851 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGTACAGTCCATGCCTGGAAAATCACAACATT
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG-AAATTCCATGCTTGG-AAATCACATCATT
* * * ** *
916 AGGTC-AAATAGTTTTCATTTTGTAAACAACTTTTATTTTTTGAATTAAAAACTT-TATTAGGTG
64 -TGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTAT-TTAGGTG
* * * * * * *
979 AGAATTATTTCTC--TTGGTTCTCGGCCAAACTTCCGAACCTAACTAACTTTTAAGAGTTCTTTT
127 AGAATTGTTTCTCTTTTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTT
** *
1042 ATAACTTCGGTTCTTTAAAGT
192 ATAA-TTTTGTTCCTTAAAGT
* * * * *
1063 AATCAAGACGATCTATTCCTTCGAGCAA-TTTCTGGAACATTCCATGCTCGAGAAATCGCACCAT
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAA-ATTCCATGCTTG-GAAATCACATCAT
* * * *
1127 TTGGTCTAAATAGTTGTTATTATGTAAACAACTTTTGATCTTTGAATTAAAAACTTATTTAGGTG
63 TT-GTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTG
** * * * * *
1192 AGAATAATTTCTCTCTTGGTTCTGGGCCGAACTTTCAAAGTTGACAAACTTTTACGATTTCTTTT
127 AGAATTGTTTCTCTTTTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTT
* *
1257 ATAACGTTGGTTCCTTAAAGT
192 ATAA-TTTTGTTCCTTAAAGT
* * * * * *
1278 ATTTAAGACTATCCATTCCTTCGAGCAATTTTCCGAACTTTTCATGCTTGGAAATCGCATCATTT
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA-ATTCCATGCTTGGAAATCACATCATTT
* * * *
1343 GGTTTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAATTCTTTAGGTGAG
65 -GTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAG
* * * * *
1408 AGTTGTTTCT-TTCTTGGTTCTCGGCCAAACTTT-AAACTTGACAAACATTTACAAGTTCTTTTA
129 AATTGTTTCTCTT-TTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTA
*
1471 TAACTTTTGTTCATTAAAGT
193 TAA-TTTTGTTCCTTAAAGT
* * **
1491 ATTCAAGACGATCCATTCCTTCGAGTAATTTTCTGTACAGACCATGCTTGGGAAATCACATCATT
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG-AAATTCCATGCTT-GGAAATCACATCATT
* * * * * **
1556 AGGTCTAAATAGTTTTCATTTTTTAAACTACTTTTGGTTTTTCAATTAAAAACCAATTTAGGTGA
64 -TGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGA
** * * * * *
1621 GAATTGTTTCTCCATTCGTTCT----C-AGC---CGAACTTGACAAACTTTTACAAGTTATTTTT
128 GAATTGTTTCTCTTTTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTA
** *
1678 TAACTTCAGTTCCTTAAAGA
193 TAA-TTTTGTTCCTTAAAGT
* * *** * *
1698 ATTCAAGACGATCCATTCCTTCCAGTAATTTT-TCGAACATTCCATGCTCAAAAAATC-GATCAC
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAA-ATTCCATGCT-TGGAAATCACATCAT
** ** * *
1761 TTGTTCTAAATA-----CA--TTGT---C-A-TTTT-G----T-AAAAAAAAAGGTATTTATGTT
63 TTG-TCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTG
** ** *
1808 AGAATTGTTTCT-TTCTTTCTTCTCGGTTGAACTTTCGAACTTGACAAACTTTAACGAGTTCTTT
127 AGAATTGTTTCTCTT-TTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTT
*
1872 TATAACTTTTGTTCATTAAAGT
191 TATAA-TTTTGTTCCTTAAAGT
* * * *
1894 ATTCAGGACTATCCATT-CTTCCGAGCAA-TTTC-G----TCCATGCTTGGGAGATCACATAATT
1 ATTCAAGACGATCCATTCCTT-CGAGCAATTTTCTGAAATTCCATGCTT-GGAAATCACATCATT
* * * *
1952 AGGTCTAAATAGTTGTCATTTTTTAAACTACTTTTTGTCTTTGAATAAAAAACTTATTTAGGTGA
64 -TGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGA
* * * *
2017 GAATTGTTTCTCTTTTGGTTCTCGGTCGAACTTCCGAACTTGAAAAACTTTTATGAGTTCTTTTA
128 GAATTGTTTCTCTTTTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTA
* *
2082 TAACTTTGATTCCTTAAACT
193 TAATTTTG-TTCCTTAAAGT
* * ** * * *
2102 ATTCAAGATGATCCCTTCCTTCGAGCAATTTTAAGAACATTCCCTGCTCTAGAAATCGCATCATT
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA-ATTCCATGCT-TGGAAATCACATCATT
* * * *
2167 TAGTCTAAATAGTTGCCATTATGTAAACAACTTTTGGTCTTT-AGATTAAAAACTTATTCAGGTG
64 T-GTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGA-ATTAAAAACTTATTTAGGTG
* * * * * *
2231 AGAATAGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAAGTTGACAAACTTTTACGAGTTCTTTT
127 AGAATTGTTTCTCTTTTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTT
* * *
2296 ATAACTTCGATTCCTTAAATT
192 ATAATTTTG-TTCCTTAAAGT
* * * **
2317 ATTCAAGATGAACCATTCCTTCGAGCAATTTTCTGAACATTCCAAGCTTAGGAAATCTTATC-TT
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA-ATTCCATGCTT-GGAAATCACATCATT
* * *
2381 TGGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAGAAA-TTCTTTATGT
64 T--GTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAA-AAACTTATTTAGGT
* **
2445 GAGAATTGTTTCT-TTCTTGGTTCTCGGTCGAACTTT--AATCTTGACAAACTTTTATAAGTTCT
126 GAGAATTGTTTCTCTT-TTGGTTCTCGGCCGAACTTTCGAA-CTTGACAAACTTTTACGAGTTCT
*
2507 TTTATAACTTTTGTTCATTAAAGT
189 TTTATAA-TTTTGTTCCTTAAAGT
* * * ** * * *
2531 ATTCAAAACGATTCATTCCTTTGAATAATTTTCTGTACAGTCCATTCTTGGAAAATCACATCATT
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTG-AAATTCCATGCTTGG-AAATCACATCATT
* * * *
2596 AGGTCTAAATAGTTTTCATTTTGTAAACTACTTTTGGTTTTTGAATTAAAAACTTATTTAGTTGA
64 -TGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGA
* *
2661 GAATTGTTTCT-TTATTCGTTCTCAGCCGAAC-TT-G-A--T---AAACTTTTACGAGTTCTTTT
128 GAATTGTTTCTCTT-TTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTT
* * * *
2717 TTAACTTCTGTTTCTTAAAGA
192 ATAA-TTTTGTTCCTTAAAGT
* * * * * *
2738 ATTCAAGACGATCCATTCCTTCCAGCAATTTTCAGAACATTCTCA-GCTCGAAAAATC-GATCAC
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA-ATTC-CATGCTTG-GAAATCACATCAT
* * ** *** * * * *
2801 TTGTTCTAAATACATTGTTATTTTGTAAAAAAAAATT-AT-TTATG--TT-AGAA-TTGTTT--C
63 TTG-TCTAAATA-GTTGTCATTTTGTAAACTACTTTTGGTCTT-TGAATTAAAAACTTATTTAGG
**** ** ** ** ** **
2858 T-TTCTTTG-TTCTCGGTT-GAACT--TTCGAAC-TT-GAA--AAACTTTA-----ACGAGTTCT
125 TGAGAATTGTTTCTCTTTTGGTTCTCGGCCGAACTTTCGAACTTGAC-AAACTTTTACGAGTTCT
* * *
2909 TTTATAACTTTTGTTCATTACAGC
189 TTTATAA-TTTTGTTCCTTAAAGT
* * * * * *
2933 ACTCAGGACGATCCATTCTTTCGAGCAATTTTCCAT-ACAGTCCATGCTTGGGAGATCACATCAT
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTT-C-TGAAATTCCATGCTT-GGAAATCACATCAT
* * * *
2997 TAGGTCTAAATAGCTGTCATTTTTTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAAGTG
63 T-TGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTG
* * * *
3062 AGAATTGTTTCTCTTTTGGTTCTCGGTCGAACTTCCGAACTTGAAAAACTTTTACGATTTCTTTT
127 AGAATTGTTTCTCTTTTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTT
* * *
3127 ATTACTTTGATTCCTTAAACT
192 ATAATTTTG-TTCCTTAAAGT
** * ** * * * *
3148 ATTCAAGGTGATTCATTCCTTCGAGCAATTTTAAGAACATTCCATGCTATAGAAAACGCAACATT
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA-ATTCCATGCT-TGGAAATCACATCATT
* * * * *
3213 TAGTCTAAATAGTTGCCATTATGTAAACAACTTTTGGTCTATGAATTAAAAACTAATTTAGGTGA
64 T-GTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGA
** * * *
3278 GAATAATTTCTCTCTTGGTTCT-GTGCCGAACTTTCGAAGTTGACAAGCTTTTACGAGTTCTTTT
128 GAATTGTTTCTCTTTTGGTTCTCG-GCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTT
*
3342 ATAACTTTGGTTCCTTAAAGT
192 ATAA-TTTTGTTCCTTAAAGT
* * **
3363 ATTTAAGATGATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTTGGAAATCACATCATTT
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA-ATTCCATGCTTGGAAATCACATCATTT
* * * *
3428 GGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAATTCTTTATGTGAG
65 -GTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAG
* * * * * * *
3493 AATTGTTTGT-TTCTTGGTTCTCTGCCAAACTTT-AAACTTGACAAAATTTT-CAAGTTCTTTTG
129 AATTGTTTCTCTT-TTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTA
*
3555 TAAATTTTGTTCATTAAAGT
193 T-AATTTTGTTCCTTAAAGT
* * *
3575 ATTCAAGATC-ATCCATTCCTTC-AGCAATTTAT-TGTACAGTCCATGCTTGGGAAATCACATTA
1 ATTCAAGA-CGATCCATTCCTTCGAGCAATTT-TCTG-AAATTCCATGCTT-GGAAATCACATCA
* * * * * *
3637 TTAGGTCTAAATTGTTGTCATTCTGTAAACTACTTTCGGTTTTTCAATTAAAAACTTATTTAGGT
62 TT-TGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGT
* * * **
3702 GAGAATTGTTTCTCTATTGGTTCTCAGCCGAACTTTCGAACTTGATAAACTTTTACGAGACCTTT
126 GAGAATTGTTTCTCTTTTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTT
* * * *
3767 TTTAACTTCTGTTCCTGAAAGA
191 TATAA-TTTTGTTCCTTAAAGT
* * * * * *
3789 ATTCAAGACGATCCATTCCTTTGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCTTCACT
1 ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA-ATTCCATGCT-TGGAAATCACATCATT
3854 TGTTCTAAATAGATTGTCATTTTGTAAA
64 TG-TCTAAATAG-TTGTCATTTTGTAAA
3882 AAAAAAGTTA
Statistics
Matches: 2925, Mismatches: 578, Indels: 334
0.76 0.15 0.09
Matches are distributed among these distances:
188 32 0.01
189 13 0.00
190 12 0.00
191 1 0.00
193 3 0.00
194 7 0.00
195 97 0.03
196 84 0.03
197 9 0.00
198 8 0.00
199 9 0.00
200 8 0.00
201 3 0.00
202 10 0.00
203 7 0.00
204 9 0.00
205 7 0.00
206 56 0.02
207 292 0.10
208 108 0.04
209 13 0.00
210 4 0.00
211 42 0.01
212 237 0.08
213 250 0.09
214 597 0.20
215 974 0.33
216 33 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (211 bp):
ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAAATTCCATGCTTGGAAATCACATCATTTG
TCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAA
TTGTTTCTCTTTTGGTTCTCGGCCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAA
TTTTGTTCCTTAAAGT
Found at i:2646 original size:429 final size:426
Alignment explanation
Indices: 1798--16205 Score: 8433
Period size: 429 Copynumber: 34.0 Consensus size: 426
1788 AAAAAAAAGG
* * * ** * ** * * *
1798 TATTTATGTTAGAATTGTTTCTTTCTTTCTTCTCGGTTGAACTTTCGAACTTGACAAACTTTAAC
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
*
1863 GAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAGGACT-ATCCATT-CTTCCGAGCAA-TTT
66 GAGTTCTTTTATAAC-TTTGTTCATTAAAGTATTCAAGA-TGATCCATTCCTT-CGAGCAATTTT
* * ** *
1925 C-G-----TCCATGCTTGGGAGATCACATAATTAGGTCTAAATAGTTGTCATTTTTTAAACTACT
128 CTGAACATTCCATGCTTAGGAAATCACATCTTTAGGTCTAAATAGTTGTCATTTTGTAAACTACT
* *
1984 TTTTGTCTTTGAATAAAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCGGTCGAAC
193 TTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCT-TTCTTGGTTCTCGGTCGAAC
* * * * *
2048 TTCCGAACTTGAAAAACTTTTATGAGTTCTTTTATAAC-TTTGATTCCTTAAACTATTCAAGATG
257 TT--TAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACG
* ** * *
2112 ATCCCTTCCTTCGAGCAATTTTAAGAACATTCCCTGCTCTAGAAATCGCATCATTTA-GTCTAAA
319 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT-TGGAAATCGCATCA-TTAGGTCTAAA
* *
2176 TAGTTGCCATTATGTAAACAACTTTTGGTCTTT-AGATTAAAAACT
382 TAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGA-ATTAAAAACT
* * *
2221 TATTCAGGTGAGAATAGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAAGTTGACAAACTTTTAC
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* * * *
2286 GAGTTCTTTTATAACTTCGATTCCTTAAATTATTCAAGATGAACCATTCCTTCGAGCAATTTTCT
66 GAGTTCTTTTATAACTTTG-TTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT
* ** * *
2351 GAACATTCCAAGCTTAGGAAATCTTATCTTTGGGTCTAAATAGTTGTCATTTTGTAAACAACTTT
130 GAACATTCCATGCTTAGGAAATCACATCTTTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTT
* *
2416 TGGTCTTTGAATTAAGAAA-TTCTTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTT
195 TGGTCTTTGAATTAA-AAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTT
** * * *
2480 TAATCTTGACAAACTTTTATAAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAAACGATTC
259 TAA-CTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCC
* ** * * * *
2545 ATTCCTTTGAATAATTTTCTGTACAGTCCATTCTTGGAAAATCACATCATTAGGTCTAAATAGTT
323 ATTCCTTCGAGCAATTTTCTGAACATTCCATGCTTGG-AAATCGCATCATTAGGTCTAAATAGTT
* * *
2610 TTCATTTTGTAAACTACTTTTGGTTTTTGAATTAAAAACT
387 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
2650 TATTTAGTTGAGAATTGTTTCTTTATTCGTTCT--------CAGCCGAACTTGATAAACTTTTAC
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* * * *
2707 GAGTTCTTTTTTAACTTCTGTTTC-TTAAAGAATTCAAGACGATCCATTCCTTCCAGCAATTTTC
66 GAGTTCTTTTATAACTT-TG-TTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTC
* * * *
2771 AGAACATTCTCA-GC-TCGAAAAATCGATCA-C-TT-GTTCTAAATA-----CA--TTGT----T
129 TGAACATTC-CATGCTTAG-GAAATC-A-CATCTTTAGGTCTAAATAGTTGTCATTTTGTAAACT
* * * * * *
2820 A-TTTT-G----T-AA-AAAAAAATTATTTATGTTAGAATTGTTTCTTTCTTTGTTCTCGGTTGA
190 ACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGA
* * * * * * *
2877 ACTTTCGAACTTGAAAAACTTTAACGAGTTCTTTTATAACTTTTGTTCATTACAGCACTCAGGAC
255 ACTTT--AACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGAC
* * * * *
2942 GATCCATTCTTTCGAGCAATTTTC-CATACAGTCCATGCTTGGGAGATCACATCATTAGGTCTAA
318 GATCCATTCCTTCGAGCAATTTTCTGA-ACATTCCATGCTT-GGAAATCGCATCATTAGGTCTAA
* * *
3006 ATAGCTGTCATTTTTTAAACTACTTTTGGTCTTTGAATTAAAAACT
381 ATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
3052 TATTTAAGTGAGAATTGTTTCTCTTTTGGTTCTCGGTCGAACTTCCGAACTTGAAAAACTTTTAC
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* * * * * * **
3117 GATTTCTTTTATTACTTTGATTCCTTAAACTATTCAAGGTGATTCATTCCTTCGAGCAATTTTAA
66 GAGTTCTTTTATAACTTTG-TTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT
* * * * * *
3182 GAACATTCCATGCTATA-GAAAACGCAACATTTA-GTCTAAATAGTTGCCATTATGTAAACAACT
130 GAACATTCCATGCT-TAGGAAATCACATC-TTTAGGTCTAAATAGTTGTCATTTTGTAAACTACT
* * ** * *
3245 TTTGGTCTATGAATTAAAAACTAATTTAGGTGAGAATAATTTCTCTCTTGGTTCT-GTGCCGAAC
193 TTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCG-GTCGAAC
* * * * *
3309 TTTCGAAGTTGACAAGCTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTTAAGATGA
257 TTT--AACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGA
** * *
3374 TCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTTGGAAATCACATCATTTGGTCTAAATAG
320 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTTGGAAATCGCATCATTAGGTCTAAATAG
*
3439 TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAAT
385 TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * ** * *** *
3481 TCTTTATGTGAGAATTGTTTGTTTCTTGGTTCTCTGCCAAAC-TTTAAACTTGACAAAATTTT-C
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* * * *
3544 AAGTTCTTTTGTAAATTTTGTTCATTAAAGTATTCAAGATCATCCATTCCTTC-AGCAATTTAT-
66 GAGTTCTTTTAT-AACTTTGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTT-TC
* * * * *
3607 TGTACAGTCCATGCTTGGGAAATCACAT-TATTAGGTCTAAATTGTTGTCATTCTGTAAACTACT
129 TGAACATTCCATGCTTAGGAAATCACATCT-TTAGGTCTAAATAGTTGTCATTTTGTAAACTACT
* * * * * * *
3671 TTCGGTTTTTCAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTATTGGTTCTCAGCCGAACT
193 TTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACT
* ** * * * *
3736 TTCGAACTTGATAAACTTTTACGAGACCTTTTTTAACTTCTGTTCCTGAAAGAATTCAAGACGAT
258 TT--AACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGAT
* * * * *
3801 CCATTCCTTTGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCTTCACTT-GTTCTAAATA
321 CCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT-TGGAAATCGCATCA-TTAGGTCTAAATA
*
3865 GATTGTCATTTTGT----AA-------------AA--AAAAAGT
384 G-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * *
3890 TATTTATGTTAGAATTGTTTCTCTATTCGTTCTCA-GCCG---A----A-CTTGACAAAGTTTTA
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCT-AGGCCGAACATCCGAACTTGACAAACTTTTA
* * *
3946 CGGGTACTTTTATAACTTTTGTTCATTAAAGTATTCAAG-TCGATCCATTCCTTCGAGTAATTTT
65 CGAGTTCTTTTATAAC-TTTGTTCATTAAAGTATTCAAGAT-GATCCATTCCTTCGAGCAATTTT
* * * *
4010 CTGTACAGTCCATGC-TAGGGAAATCACATCATTAGGTCTCTAAATAGTTGTCATTTTTTAAACT
128 CTGAACATTCCATGCTTA-GGAAATCACATCTTTAGG--TCTAAATAGTTGTCATTTTGTAAACT
* * * * *
4074 ACTTTTGGTCTTCGAATTAAAAACTTATTTAGATGAGAAATGTTTCCCTT-TTGGTTCTCGATCG
190 ACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTT-CTTTCTTGGTTCTCGGTCG
* * *
4138 AACTTTCGAACTTGAAAAACTTTTACGAGTTCTTTTATAAC-TTTGATTCCTTAAACTATCCAAG
254 AACTTT--AACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAG
* * ** * *
4202 ATGATCCCTTCCTTCGAGCAATTTTAAGAACATTCCATGCTCTAGAAATCGCTTCATTTA-GTCT
316 ACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT-TGGAAATCGCATCA-TTAGGTCT
* * * * * *
4266 AAATAGTTGCCATTATATAAACAACTATTGATCTTTAAATTAAAAACT
379 AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * *
4314 TATTCAAGTGAGAATAG-TT-TCTCTTGGTTCTAGGCCGAACATCCGAAGTTTACAAACTTTTAC
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* * * * * * *
4377 GAGTTCTTTTTTAACTTCGGTTCCTTAAATTATTCAAGACGAACCATTTCTTCGAGCAATTTTCT
66 GAGTTCTTTTATAACTT-TGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT
* * * *
4442 GAACATTCCAAGCTTAGGAAATCTCATCTTTGGGTCTAAATAGTTGTCATTTTGTAAACAACTTT
130 GAACATTCCATGCTTAGGAAATCACATCTTTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTT
* * * *
4507 TGGTCTTTGAATTAAAAAAATTCTTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGGACGAACTT
195 TGGTCTTTGAATT-AAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTT
* ** **
4572 TAAAATTGACAAACTTTTATAAGTTCTTTTATAACTTTTGTTCAATAAAGTATTCAAGACGATCC
259 T-AACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCC
* * * * *
4637 ATTCCTTCGAGTAATTTTCTGTACAGTCCATGCTTGGGAAATCACATCATTAGGTCCAAATAGTT
323 ATTCCTTCGAGCAATTTTCTGAACATTCCATGCTT-GGAAATCGCATCATTAGGTCTAAATAGTT
* * * *
4702 GTCATTTTGTAAACTACTTTTTGTTTTTCAATTAAAAACT
387 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * *
4742 TATTTAGTTG-GAAATTATTTCTCTATTCGTTCTTA----G-----CCGAACTTGACAAAGTTTT
1 TATTTAGGTGAG-AATTGTTTCTCTCTTGGTTC-TAGGCCGAACATCCGAACTTGACAAACTTTT
* * *
4797 ACGAGTACTTTTATAACTTTTGTTCATTAAAGTATTCAAG-TCGAACCATTCCTTCGAGTAATTT
64 ACGAGTTCTTTTATAAC-TTTGTTCATTAAAGTATTCAAGAT-GATCCATTCCTTCGAGCAATTT
* * * * * * * *
4861 TTTGTACAGTCCATGCATGGGAAATCACATCATTAGGTCTGAATAGTTGTCATTTTTTAAACTAC
127 TCTGAACATTCCATGCTTAGGAAATCACATCTTTAGGTCTAAATAGTTGTCATTTTGTAAACTAC
** *
4926 TTTTGGTCTTCCAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCGGTTGAA
192 TTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCT-TTCTTGGTTCTCGGTCGAA
* * * * *
4990 CTTCCGAACTTAAAAAACTTTTACGAGTTAC-TTTATAATTTTTGATTCCTTAAACTATTCAAGA
256 CTT--TAACTTGACAAACTTTTACGAGTT-CTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGA
* ** * * *
5054 CGATCCATTCCTTTGAGCAATTTTAAGAAAATTCCTTGCTATAGAAATCGCATCATTTA-GTCTA
317 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT-TGGAAATCGCATCA-TTAGGTCTA
* * * * *
5118 AATAATTGCCATTATGTAAACAACTTTTGGTCTTCGAATTTAAAACT
380 AATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * * *
5165 TTTTTAGGTGAGCATAGTTTCTCTCTTGTTTCTAGGCCGAACTTTCGAAGTTGACAAACTTTTAC
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* *
5230 GAGTTCTTTTATAACTTCGGTTC--------CTT-AA-A-G----------T--A--AATTTTCT
66 GAGTTCTTTTATAACTT-TGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT
* * * * *
5270 GAACATTCCAAGCTGAGGGAATCTCATCATTT-GGTCTAAATAGTTGTCATTTTGTAAACAACTT
130 GAACATTCCATGCTTAGGAAATCACATC-TTTAGGTCTAAATAGTTGTCATTTTGTAAACTACTT
* * * * *
5334 TTGGTCTTTGAAATAAAAAATTCTTTATGTGAGAATTGTTTCTTTCTTCGTTCTCGGTCGAACTT
194 TTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTT
* * * * *
5399 TAAACTTGACAAACTTTTACAAGTTCTTTTATAACTTTTGTTCATTAAAGCACTCAGGACGATCC
259 T-AACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCC
* * * * * *
5464 ATTCTTTCGAGCAATTTTC-CATACAGTCCATGCTTAGGAGATCACATCATTAGGCCTAAATAGT
323 ATTCCTTCGAGCAATTTTCTGA-ACATTCCATGCTT-GGAAATCGCATCATTAGGTCTAAATAGT
* * * *
5528 TGTCATTTTTTAAACTACTTTTGGTCTTTGAATAAAAAATT
386 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * *
5569 TATTTAGGTGAGAATTGTGTCTCTTTTGGTTC-ACGGTCGAACTTCCGAACCTG-CAAAACTTTT
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTA-GGCCGAACATCCGAACTTGAC-AAACTTTT
* * *
5632 ACGAGTTCTTTTATAACTTTGATTCCTTAAACTATTCAAGATGATCC-CTCCTTCGAGCAATTTT
64 ACGAGTTCTTTTATAACTTTG-TTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT
** * * * * *
5696 AAGAACATTCCATGCTCTA-GAAATCGCATCATTTA-GTCTAAATAGTCGCCATTATGTAAACAA
128 CTGAACATTCCATGCT-TAGGAAATCACATC-TTTAGGTCTAAATAGTTGTCATTTTGTAAACTA
* * * * * *
5759 CTTTTGGTATTTAAATTAAAAACTTATTCAGGTGAGAATAGTTTCTCTT-TTGGTTCTAGGCCGA
191 CTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCT-TTCTTGGTTCTCGGTCGA
** * * ** *
5823 ACATCCGAAGTTGACAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAAATTATTCAAGAC
255 AC-T-TTAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGAC
* * * * *
5888 GAAT-CATTCCTTCGATCAATTTTCTGAACATTCCAAGCTTAGGAAATCTCATCTTTGGGTCTAA
318 G-ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTT-GGAAATCGCATCATTAGGTCTAA
* *
5952 ATAGTTGTCATTTTGTAAACAACTTTTAGTCTTTGAATTAAAAAAT
381 ATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * **
5998 TATTTATGTGAGAATTGTTTTTTTCTTGGTTCTCGGCCGAAC-T-TTAATCTTGACAAACTTTTA
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAA-CTTGACAAACTTTTA
** * * *
6061 TAAGTTCTTTTATAACTTTTTTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTC
65 CGAGTTCTTTTATAAC-TTTGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTC
* * * * * *
6126 TGTAC-TGTCCATTCTTGGGAAATCACATCATTAGGTTTAAATAGTTTTCATTTTGTAAACTACT
129 TGAACAT-TCCATGCTTAGGAAATCACATCTTTAGGTCTAAATAGTTGTCATTTTGTAAACTACT
* * * * ** *
6190 TTTGGTTTTTCAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTATTCATTCTCAGTCG----
193 TTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACT
* * * *
6251 --AACTTGACAAAATTTTACGAGTTCTTTTTTAACTTTTGTTCCTTAATGAATTCAAGACGATCC
258 TTAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCC
* * * * * * *
6314 ATTCCTTCCAGAAATTTT-TGGAACATTCCAAGCTCGAAAAATCG-ATCACGT-GTTCTAAATA-
323 ATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTTG-GAAATCGCATCA-TTAGGTCTAAATAG
* *
6375 ----CA--TTGT---C-A-TTTT-G----T-AA-AAAAAATT
385 TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * *** * *
6399 TATTTATGTTAGAATTGTTTCTTTCTTTGTTCTCGATTGAACTTCCGAACTTGACAAACTTTAAC
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* * * * * *
6464 GAGTTCTTTTATAACTTTTGTTCATTAAAGAACTCAGGACGATCAATTCTTTCGAGCAATTTT-T
66 GAGTTCTTTTATAAC-TTTGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT
* * * * * *
6528 CATACAGTCCATGCTTGGGAGATCACATCATTAGGTCTAAATAGTTGTCATTTTTTAAACTACTT
130 GA-ACATTCCATGCTTAGGAAATCACATCTTTAGGTCTAAATAGTTGTCATTTTGTAAACTACTT
6593 TTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCGGTCGAACA
194 TTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCT-TTCTTGGTTCTCGGTCGAAC-
** * * * * *
6657 TCCAAACTTGAAAAACTTTTACGAGTTCTTTTATAAC-TTTGATTTCTTAAACTATTGAAGATGA
257 T-TTAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACGA
* ** * **
6721 TCCATTCCTTCCAGCAATTTTAAGAACATTCCATGCTCTAGAAATCGCATCATTTCGTCTAAATA
320 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT-TGGAAATCGCATCATTAGGTCTAAATA
* *
6786 GTTGTCATTATGCAAACAACTTTTGGTCTATT-AATTAAAAACT
384 GTTGTCATTTTGTAAACAACTTTTGGTCT-TTGAATTAAAAACT
* * * *
6829 TATTCAGGTGAGAATAGTTTCTCTCTTAGTTCTAGGCCGAACATCCGAAGTTGACAAACTTTTAC
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* * * * *
6894 GAGTTCTTTTATAACTTCGATTCCTTAAGGTATTCAAGATGAACCATTCCTTCGAGAAATTTAT-
66 GAGTTCTTTTATAACTTTG-TTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTT-TC
* * * * * *
6958 TTAACATTTCAAGCTTAGGAAATCTCATCATTT-GGCCTAAATAGTTGTCATTTTGTAAACAACT
129 TGAACATTCCATGCTTAGGAAATCACATC-TTTAGGTCTAAATAGTTGTCATTTTGTAAACTACT
* * *
7022 TTTGGTCTTTGAATTAAAAAATTCTTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACT
193 TTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACT
* ** * *
7087 TTAAACTTTACAAACTTTTATAAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGATGATC
258 TT-AACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATC
* * * * * *
7152 AATTCCTTTGAGCAATTTTTTGAAAATTCCATGCTCGGGAAATCGCATCACTT-GTTCTAAATA-
322 CATTCCTTCGAGCAATTTTCTGAACATTCCATGCT-TGGAAATCGCATCA-TTAGGTCTAAATAG
* *
7215 ----CA--TTGT---C-A-TTTT-G----T-AA-AAAAAAGT
385 TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * ** * * *
7239 TATTTATGTTAGAATTGTTTCTTTCTTTGTTCTCA-GTTGAACTTTCGAACTTGACAAACTTTAA
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCT-AGGCCGAACATCCGAACTTGACAAACTTTTA
* * * *
7303 CGAGTTCTTTTATAATTTTTGTTCATTAAAGTATTCATGACGATCCATTCTTTCGAGCAA-TTTC
65 CGAGTTCTTTTATAA-CTTTGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTC
** * * * * *
7367 CCACACAGTCCATGC-TCGAGAGATCACATCATTAGGTCTAAATAGTTGTCATTTTTTAAACTAC
129 TGA-ACATTCCATGCTTAG-GAAATCACATCTTTAGGTCTAAATAGTTGTCATTTTGTAAACTAC
* * *
7431 TTTTGGTCTTTAAATTAAAAACTTATTTAGGTTAGAATTGTTTCTCTT-TTGGTTCTCGGTTGAA
192 TTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCT-TTCTTGGTTCTCGGTCGAA
* * * * *
7495 CTTCCGAACTTGAAAAACTTTTACGATTTCTTTTATAAC-TTTGATTCCTTAAACTATTCAAGAT
256 CTT--TAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGAC
* ** *
7559 GATCCATTGCTTCGAGCAATTTTAAGAACATTCCATGCTCTAGAAATCGCATCATTTA-GTCTAA
318 GATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT-TGGAAATCGCATCA-TTAGGTCTAA
* *
7623 ATAGTTGTCATTATGTAAACAACTTTTGGTCTATGAATTAAAAACT
381 ATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * ** * * * *
7669 AATTTAGTTGAGAATAATTTCTCTCTTGGTTCT-GCGCCGAACTTTCGAAGTTGACAAGCTTTTA
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAG-GCCGAACATCCGAACTTGACAAACTTTTA
* *
7733 CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTTAAGATGATCCATTCCTTCGAGCAATTTTC
65 CGAGTTCTTTTATAACTTT-GTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTC
* * ** * * ** *
7798 CGAACATTCCATGCTTTTACGAGTTGACAAGC-TT---T-T-ACGAG-T-TC--TTT-T--ACAA
129 TGAACATTCCATGC--TTAGGAAATCAC-ATCTTTAGGTCTAAATAGTTGTCATTTTGTAAACTA
* * * * * * *
7850 CTTTTGGTCTATGAATTAAAAACTTATTCAGGTGAGAATAGTTTCTCTCTTGGTTCTAGGCCTAA
191 CTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTC-GA
* * * * * * *
7915 AATCTGAAGTTGACAACCTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAGGTATTCAAGATG
255 ACT-TTAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACG
* * * * * * * *
7980 AACCATTCCTTCGAGAAATTTAT-TTAACATTCCAAGCTTAGGAAATCTCATCTTTTGGTCCAAA
319 ATCCATTCCTTCGAGCAATTT-TCTGAACATTCCATGCTT-GGAAATCGCATCATTAGGTCTAAA
* *
8044 TAGTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAAAT
382 TAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * *** * *
8089 TCTTTATGTGAGAATTGTTTCTTTCTTGGTTCTCA-GCCGAAC-TTTAAACTTTACAAACTTTAA
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCT-AGGCCGAACATCCGAACTTGACAAACTTTTA
** * * * *
8152 TAAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCCAATCCTTCGAGAAATTTTT
65 CGAGTTCTTTTATAAC-TTTGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTC
* * *
8217 TG---A-T-C--G----GGAAATCGCATCACTT-GTTCTAAATA-----CA--TTGT---C-A-T
129 TGAACATTCCATGCTTAGGAAATCACATC-TTTAGGTCTAAATAGTTGTCATTTTGTAAACTACT
* * * * * ** *
8258 TTT-G----T-AA-AAAAAAGTTATTTATGTTAGAATTGTTTCTTTCTTTGTTCTCAATTGAACT
193 TTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAAC-
* * * *
8316 TTTGAACTTGACAAACTTTAACGAGTTCTTTTATAACTTTTGTTCATTAAATTATTCAGGACGAT
257 TTT-AACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGAT
* * * * * * * * *
8381 CCATTCTTTCAAGCAATTTGC-CACACAGTCCATGCTCGAGAGATCACATCATTAGGTCTAAACA
321 CCATTCCTTCGAGCAATTTTCTGA-ACATTCCATGCTTG-GAAATCGCATCATTAGGTCTAAATA
* * *
8445 GTTGTCATTTTCTAAACTACTTTTGGTCTTTAAATTAAAAACT
384 GTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * *
8488 TATTTAGGTGAGAATTGTTTCTCT-TTCGGTTCTCGGTCGAACTTTCGAACTTGAAAAACTTTTA
1 TATTTAGGTGAGAATTGTTTCTCTCTT-GGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTA
* ** *
8552 CGAGTTCTTTTATAACTTTGATTCCTTAAACAATTCAAGATGATCCATTCCTTCGAGCAATTTTA
65 CGAGTTCTTTTATAACTTTG-TTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTC
* * * * * *
8617 AGAACATTCCATGCTCTA-GAAATCGCATCATTTA-GTCTAAATAGTTGCCGTTATGTAAACAAC
129 TGAACATTCCATGCT-TAGGAAATCACATC-TTTAGGTCTAAATAGTTGTCATTTTGTAAACTAC
* * * * * * * *
8680 TTTTAGTCTTTAAATTAAAAACTTATTCAAGTGAGAATAGTTTCTCTCTTGGTTCTAGGCCGAAC
192 TTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAAC
** * ** *
8745 ATCCGAAGTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAA
257 -T-TTAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGA
* * * * * * *
8810 ACCATTCCTTCGAGCAATTTTCTGAACATTCCAAGCTGAGGGAATCTCATCATTTGGTCTAAGTA
320 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT-TGGAAATCGCATCATTAGGTCTAAATA
*
8875 GTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAAT
384 GTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * ***
8918 TCTTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGGCCGAAC-TTTAAACTTGACAAACTTTTAC
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* * * * * *
8982 AAGTTCTTTAATAACTTTTGTTCATTAAAGTATTCAAGACGAACCATTCCTTCGAGCATTTTTTT
66 GAGTTCTTTTATAAC-TTTGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT
* * * *
9047 GTACAGTCCATGCTT-GGAAAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTAAACAACTT
130 GAACATTCCATGCTTAGG-AAATCACATCTTTAGGTCTAAATAGTTGTCATTTTGTAAACTACTT
* * ** * * *
9111 TAGGTTTTTGAATTAAAAACTTATTTAGGTGAGAA-TAATTCTCTCTTGGTTCTGGGCCGAACTT
194 TTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTT
* * * *
9175 TCGAAGTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAGGTATTTAAGACGATC
259 T--AACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATC
** * * *
9240 CATTCCTTTAAGCAATTTTCCGTACATTCCATGCTTGGAAATCGCATCATTTGGTCTAAATAGTT
322 CATTCCTTCGAGCAATTTTCTGAACATTCCATGCTTGGAAATCGCATCATTAGGTCTAAATAGTT
* *
9305 GTCATTTTGTGAACAACTTTTGGTCTTTGAATTAAAAAAT
387 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * ** * ***
9345 TCTTTATGTGAGAATTGTTTTTTTCTTAGTTCTCTGCCAAAC-TTTAAACTTGACAAGA-TTTT-
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAA-ACTTTTA
* * * *
9407 CAAGTTCTTTTATAAATTTTGTTCATTTAAGTATTCAAGGTGATCCATTCCTTC-AGCAATTTAT
65 CGAGTTCTTTTAT-AACTTTGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTT-T
* * * * *
9471 -TGTACAGTCCATGCTTGGGAAATCACAT-TATTAGGTCTAAATTGTTGTCATTCTGTAAACTAC
128 CTGAACATTCCATGCTTAGGAAATCACATCT-TTAGGTCTAAATAGTTGTCATTTTGTAAACTAC
* * * * ***
9534 TTTTGGTTTTTCAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTATTGGTTCTCAACCGAAC
192 TTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAAC
* * * * ** *
9599 TTCCGAACTTGATAAACTTTTACGAGTTATATTT-TAACTTCTGTTCCTTAAAAAATTCAAGACA
257 TT--TAACTTGACAAACTTTTACGAGTTCT-TTTATAACTTTTGTTCCTTAAAGTATTCAAGACG
* * *
9663 ATCCATTCCTTCGAGCAATTTTGTGAACATTCCATGCTCGGGAAATCGCATCACTTA-TTCTAAA
319 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT-TGGAAATCGCATCA-TTAGGTCTAAA
*
9727 TAGATTGTCATTTTGT--A-AA-------------AA--AAAAAGT
382 TAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * ** * **
9755 TATTTATGTTAGAATTGTTTCTTTCTTTGTTCTCGGTTGAACTTCTAAACTTGACAAAC-TTTAC
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTA-
* * * * * *
9819 CGAGTTCTTTTATAACTTTTGTTCATTAAAGTTTTCAGGACGATTCATTCTTTCGAGCAATTTAC
65 CGAGTTCTTTTATAAC-TTTGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTC
* * * * * *
9884 -CATACAGTCCATGCTTTGGAGATCACATCATTAGGTCTAAATAGTTGTCATTTTCTAAACTACT
129 TGA-ACATTCCATGCTTAGGAAATCACATCTTTAGGTCTAAATAGTTGTCATTTTGTAAACTACT
* * * *
9948 TTTGGTCTTTGAAGTAAAAACTTACTTAGGTTAGAATAGTTTCTCTT-TTGGTTCTCGGTCGAAC
193 TTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCT-TTCTTGGTTCTCGGTCGAAC
* * * * * *
10012 TTCCGAACTTGAAAAATTTTTACGAGTTCTTTTTTAAC-TTTGATTCCTTAAACTATTCAAGATG
257 TT--TAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACG
*** * *
10076 ATCCATTCCTTCGAGCAATTTTAAAAACATTCCATGCTTTAGAAATAGCATCATTTA-GTCTAAA
319 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGC-TTGGAAATCGCATCA-TTAGGTCTAAA
* * *
10140 TAGTT-TCCATTATGTAAACAACTTTTGGTCTATGAATTATAAACT
382 TAGTTGT-CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* ** * * * * *
10185 AATTTAGGTGAGAATAATTTCTCTCTTGGTTATGGGTCGAA-ATTTCGAAGTTGA-AAAGCTTTT
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACA-TCCGAACTTGACAAA-CTTTT
* * * * *
10248 ACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTGTTTAAGACGGTCCATTCCTTCGAGCANNNNN
64 ACGAGTTCTTTTATAACTTT-GTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCA-----
**************************** *
10313 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACATTATTTA-GTCTAAA
123 -----------------ATTTTCTGAACATTCCATGCTTAGGAAATCACA-TCTTTAGGTCTAAA
* * * *
10377 TAGTTGCCATTATGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAGTTT
170 TAGTTGTCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTT
* * * * * * *
10442 CTCTCTTGGTTATGGGTCAAAATTTCGAAGTTGA-AAAGCTTTTACGAGTTCTTTTATAACTTTG
235 CTTTCTTGGTTCTCGGTCGAACTTT--AACTTGACAAA-CTTTTACGAGTTCTTTTATAACTTTT
* * *
10506 GTTCCTTAAAGTGTTTAAGACGGTCCATTCCTTCGAGCAATTTT-TCGAACATTCCATGCTTGGA
297 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTTGGA
* *
10570 AATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAA
361 AATCGCATCATTAGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
10635 T
426 T
* * * * *** * ** *
10636 TCTTTATGTGAGAATTGTTTGTTTCTTGGTTCTCTTCCAAAC-T-TTATACTTGACAAAATTTT-
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGA-ACTTGACAAACTTTTA
* *
10698 CAAGTTCTTTTATAAATTTTGTTCATTAAAGTATTCAAGATGATCCATTCCTTC-AGCAATTTAT
65 CGAGTTCTTTTAT-AACTTTGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTT-T
* * * * * * *
10762 -TGTATAGTCCGTGCTTGGGAAATCACAT-TATTAGGTCTAAATTGTTGTCATTCTGTAAACTAC
128 CTGAACATTCCATGCTTAGGAAATCACATCT-TTAGGTCTAAATAGTTGTCATTTTGTAAACTAC
* * * * * * * *
10825 TTTTGGTTTTTCAATTAACAACTTATTTAGGTGAGAATTGTTTCTCTATTAGTTCTCAGCCGAAC
192 TTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAAC
* * * * * * *
10890 TTCCGAACTTGATAAACTTTTATGAGTTATATTT-TAACTTCTGTTCCTTAAAGAATTCAAGACT
257 TT--TAACTTGACAAACTTTTACGAGTTCT-TTTATAACTTTTGTTCCTTAAAGTATTCAAGACG
* * * *
10954 ATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCACTT-GTTCTAAA
319 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT-TGGAAATCGCATCA-TTAGGTCTAAA
**
11018 TAGATTGTCATTTTGT----AA-------------AA--AAAAGGT
382 TAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * *** * * *
11045 TATTTATGTTAGAATTGTTTCTTTCTTTGTTCTCGATTGAACTTCCGAACTTGACAAACTTTAAT
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* * * * * *
11110 GAGTTCTTTTATAACTTTTGTTCATTATAGCATTCAGGACGATCCATTCTTTCGAGCAA-TTTCC
66 GAGTTCTTTTATAAC-TTTGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT
* * * * * *
11174 CATACAGTCCATGCTTGGGAGATCACATCATTAGGTCTAAATAGTTGTCATTTTTTAAACTACTT
130 GA-ACATTCCATGCTTAGGAAATCACATCTTTAGGTCTAAATAGTTGTCATTTTGTAAACTACTT
* * * *
11239 TTTGTCTTTG-ATTAAAAACTTATTTAGGTGAGGATTGTTTCTCTT-TTGCTTCTCGGTCAAACT
194 TTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCT-TTCTTGGTTCTCGGTCGAACT
* * * *
11302 TCCGAACTTGA-AAATTTTTTACGAGTTCTTTTATAAC-TTTGATTCCTTAAACTATTCAAGATG
258 T--TAACTTGACAAA-CTTTTACGAGTTCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACG
** * * *
11365 ATCCATTCCTTCGAGCAATTTTAAGAACATTCCATGCTCTAGAAATCACATTATTTA-GTCTAAA
319 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT-TGGAAATCGCATCA-TTAGGTCTAAA
* *
11429 TAGTTGCCATTATGTAAACAACTTTTGGTCTTTGAATTAAAAACT
382 TAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * *
11474 TATTCAGGTGAGAATAGTTTTTCTCTTGGTTCTAGGCCGAACATCCGAAGTTGACAAACTATTAC
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* * * * *
11539 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAACATGAACCATTCCTTCGAGCAATTTTTT
66 GAGTTCTTTTATAACTT-TGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT
* * * * *
11604 GAACATTCCAAGCTTAGGAAATCTCATCTTTTGGTCCAAATAGTTGTCATTTTGTAAACAACTTT
130 GAACATTCCATGCTTAGGAAATCACATCTTTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTT
* * * ** * *
11669 TGGACTTTGAATTAAAAAATTGTTTACATGAGAATTGTTTCTTTCTTGGTTCTCAGCCGAACTTT
195 TGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTTT
** * *
11734 AAACTTGACAAACTTTTATAAGTTCTTTTATAACTTTTGTTCATCAAAGTATTCAAGACGATCCA
260 -AACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
11799 TTCCTTCGAGTAATTTTCTGTACAGTCCATGCTTGGGAAATCACATTATTAGGTCTAAATTGTTG
324 TTCCTTCGAGCAATTTTCTGAACATTCCATGCTT-GGAAATCGCATCATTAGGTCTAAATAGTTG
* * * *
11864 TCATTCTGTAAACTACTTTTGGTTTTTCAATTAAAAACT
388 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
11903 TATTTAGATGAGAATTGTTTCTCTATTCGTTCT---CAGTA-A----AACTTGACAAACCTTTAC
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* * * * * * *
11960 GAGTTATTTTTTAACTTCT-TCTCCTTAAAGAATTCAAGACGATCCATTCCTTCTAGTAATTTTC
66 GAGTTCTTTTATAACTT-TGT-TCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTC
* * * * *
12024 TGAACATTCCATGC-TCGGAAAATCGCATCAATT-GTTCTAAATAGATTGTC-TTTT-T--TCT-
129 TGAACATTCCATGCTTAGG-AAATCACATC-TTTAGGTCTAAATAG-TTGTCATTTTGTAAACTA
** ** ** * * * * * * * *** *
12082 CAGTTGAACTTCCAAACTTGACAAACTTTAACGAGTTATGTTATAACTTTTGTTCATTAAAGTAT
191 CTTTTGGTCTT-TGAA-TT-AAAAAC-TT----ATTTAGGTGAGAA-TTGT-TTCTTTCTTG-GT
* * * * * * ** * *** * **** *
12147 TCAC-GACGATCCATTCA-TTCAAGCAATTTTTCATAC-AGTCCATGCTTGGGAA-ATCACATCA
245 TCTCGGTCGA-ACTTTAACTT-GA-CAAACTTT--TACGAGTTC-T--TTTATAACTTTTGTTCC
* * * * * * * ** * * * ** * * *
12208 TT-AGGT-CTAAATA-GTTGTCATT-TTTTAAACTACTTT-TGGTC-TT---TGAATT-AAAAAC
302 TTAAAGTATTCAAGACGAT-CCATTCCTTCGAGCAATTTTCTGAACATTCCATG-CTTGGAAATC
** * * * * * * * ** * ** **
12263 TTAT--TTAGAT-GAGAATTGTT-TCCCTCTTGGT--TC-TCGATCGAACATCCGAAGTTGAAAA
365 GCATCATTAGGTCTA-AATAGTTGT-CAT-TTTGTAAACAACTTTTGGTC-TTTGAA-TT-AAAA
12321 AC-
424 ACT
* * * ** * ** ** *
12323 T-TTTA--CGAG-TTCTTTTATAACT-TTGATTCCTTAAACTATTCAAGATGATCC-ATTCCTTC
1 TATTTAGGTGAGAAT-TGTT-TCTCTCTTGGTT-C-TAGGC----C--GAACATCCGA--ACTT-
* * * * * * * * * *
12382 GAGC-AA-TTTTAAGAAAATTGCATGCTCTAGAA-ATCGCATCATT-TAGT-CT-AA-ATAGTTT
53 GA-CAAACTTTTACG--AGTT-C-T--TTTATAACTTTG-TTCATTAAAGTATTCAAGAT-G-AT
* * * * * * ** * * *
12440 CCATT-ATGT-AAACAACTTT-TGGACTTTGAAT--TT---AAA--ACTTATTTAGGT-GAGAAT
108 CCATTCCT-TCGAGCAATTTTCTGAACATTCCATGCTTAGGAAATCACATCTTTAGGTCTA-AAT
* * * * *
12494 AGTT-TC-TCTCTTGGT----T-C--TAGGCCTTTCAAAGTTGACAAAC-T-TTTA--CGAG--T
171 AGTTGTCAT-T-TT-GTAAACTACTTTTGGTCTTT-GAA-TT-AAAAACTTATTTAGGTGAGAAT
* * * ** * ***
12544 TCTTT-TATAACTTCAGTTC-C--TTAAAGTATTCAA---GACAAACCATTCCTT-CGAGCAATT
230 TGTTTCT-T-TCTT-GGTTCTCGGTCGAACT-TT-AACTTGACAAA-C-TT--TTACGAGTTCTT
* * ***** *** * * * ** * * *
12601 TTCTGAACATTCCAAGCTTAGGAA--ATCTCATCATTTGGTCTAAATAGTT-G-TC-ATTTTGTA
286 TTAT-AACTTTTGTTCCTTA--AAGTAT-TCA--AGACGATC-CATTCCTTCGAGCAATTTTCTG
* * **** * * * * * **
12661 AACAACTT--TTGAACTTTGAATTAAAAAATACTTTATGT-GAGAATTGTT-TCTTTCTTGGTTC
344 AAC-A-TTCCATG--CTTGGAA--ATCGCAT-CATTAGGTCTA-AATAGTTGTCATT-TT-GTAA
* * * ** * * *
12722 TCGAC---CGAACCTTAAACTTGACAAAC-
399 ACAACTTTTGGTCTTTGAA-TT-AAAAACT
* * * * * ** * *
12748 T-TTTA---CA-AGTTCTTT-TATAACTTTTGTTCATTAAAGTATTCAAGACGATCC-ATTCCTT
1 TATTTAGGTGAGAATTGTTTCTCT--C-TTGGTTC--T--AG--GCCGA-AC-ATCCGA--ACTT
* ** ** * * * * ** *
12806 CAAGCAATTTTCTATAC-AGTCCATGCTTGGA-AAATCAT-TTCATT-AGGTCTAAATAGTTG-T
53 -GA-CAAACTT-T-TACGAGT---T-CTTTTATAACT-TTGTTCATTAAAGTATTCA-AGATGAT
* * * *** * * * *
12866 -CATT--TT-GTAAACTACTTT-TG-GTTTTCCA--ATTA--AAA--ACTTATTTAGGT-AAGAA
108 CCATTCCTTCG--AGCAATTTTCTGAACATTCCATGCTTAGGAAATCACATCTTTAGGTCTA-AA
* * * * ** * ** * **
12918 TTGTT-TCCCTTTCGGT--TCT-CGGTCGAACTTATGAACCTGGAAAC-T-TTTACGAGTTCTTT
170 TAGTTGT-CATTT-TGTAAACTACTTTTGGTCTT-TGAA-TTAAAAACTTATTTA-G-G-----T
* * * * *** * * * * * * **
12977 CAAAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCCAAACTTTT-
224 GAGAA-TT-GTTTCTTTCTTG-GTTC---TCGGTCGA--AC-TT---TAACTTGACAAACTTTTA
** * * * * *
13041 -GAAGTTAACAAACTTTTACGACTTCTTTTATAACTT-CAGT-TCCTGAA-A-G-T--ATT-C-A
277 CG-AGTT------CTTTTATAACTT-TTGT-T-CCTTAAAGTAT--TCAAGACGATCCATTCCTT
* * * * * ** * * ** ***
13096 AGA-CGATCCTTC-GAGCAATTTTCTGAATG-TTCCAAGCTCAGGAAATCGCATCATTTGGGCTA
330 CGAGCAAT-TTTCTGAAC-A--TTC--CATGCTTGGAA-ATC--G-CATC-ATTAGGT----CTA
* *
13158 AATAGTTGTCATTTTATAAAAAAAACTTTTGGTCTTTGAATTAAAAAACT
380 AATAGTTGTCATTTTGT--AAACAACTTTTGGTCTTTGAATT-AAAAACT
* * * * * * *
13208 TATTTAGGTGATAATAGTTTCTCT-TTAGGTTCTAGGCCGAACTTTCGAACTTAAAAAACCTTTA
1 TATTTAGGTGAGAATTGTTTCTCTCTT-GGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTA
* * * * * * * *
13272 CGAGTTCTTTTTTAACTTTGGTTCCTTAAATTATTCAAGACGATCTATACCTTCAAGGAATTTT-
65 CGAGTTCTTTTATAACTTT-GTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTC
* * * * ** * * *
13336 TCAAACATTCCATTCTCAGAAAATTGCATCAATT-GTTCTAAATAGATTGTCATTTTGTAAACAA
129 T-GAACATTCCATGCTTAGGAAATCACATC-TTTAGGTCTAAATAG-TTGTCATTTTGTAAACTA
* * * *
13400 CTTTTGGTCTTTGAATTAAAAACTTATTTAAGTAAGAATTGTTTCTTTCTAGGTTCTCGGCCGAA
191 CTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAA
* * *
13465 CTTCCAAACTTGACAAACTTTTATGAGTTCTTTTATAACTTTTATTCCTTAAAGTATTCAAGACG
256 CTT--TAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACG
* * * * * * * *
13530 ATCCATTCCTCCCGACCATTTTTC-GAACAATACATACTCTGGAAATCGTATCATTTGGT-TCAA
319 ATCCATTCCT-TCGAGCAATTTTCTGAACATTCCATGCT-TGGAAATCGCATCATTAGGTCT-AA
*
13593 ATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACT
381 ATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * * * * * * ** * *
13639 TGTTTAGGTGATAATAGTTCCTTTCTAGGTTCTCGACAGAACTTTTGAACTTGACAAACATTTAA
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* * * *
13704 GAGTTCTTTGT-TGACTTCGATTTC-TTAAAGTATTCAAGATGACCCATTCTTTCGCA-CAATTT
66 GAGTTCTTT-TATAACTTTG--TTCATTAAAGTATTCAAGATGATCCATTCCTTCG-AGCAATTT
** * * *
13766 TCCAAACATTCCATGCTT-GAGAAATCATATCATTT-GTTCTAAACATA-TTGGCATTTTGTAAA
127 TCTGAACATTCCATGCTTAG-GAAATCACATC-TTTAGGTCT-AA-ATAGTTGTCATTTTGTAAA
* * * * * *
13828 CAACTTTTGGTCTTTAAATTTAAAAGTTATTTATGTGAGAATTGTTTCTTTCATGGTTCTCGGTC
188 CTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTC
* * * *
13893 GAACTTCTGAACTTGACAAACTATTACGAGTTGTTTTATAACTTTTATTCCTTAAAGTATTCAAT
253 GAACTT-T-AACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAG
* * * * * * **
13958 ACAATCCATTCCTTTGAGCCATTTTCCGAACAGTCCATGCTTGGGAAATCACATCATTTTGTCTA
316 ACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTT-GGAAATCGCATCATTAGGTCTA
* *
14023 AATAGTTGCCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACT
380 AATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * ** * *
14070 TATTTAGGTGTGAATTGTTTCTTTCTTGGTTCTTGATCGAACTTTCGAACTTGACAAACTTTTAC
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* * * * * * * *
14135 AAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGAAATTTTTT
66 GAGTTCTTTTATAACTT-TGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT
* ** *
14200 GAACATTCCATGC-TCGAGAAATTGCATCATTT-GGTCTAAATAGTTGTCATTTTGTAAACAACT
130 GAACATTCCATGCTTAG-GAAATCACATC-TTTAGGTCTAAATAGTTGTCATTTTGTAAACTACT
** *
14263 TTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAATTTCTCTCTTGGTTCAT-GGTCGAAC
193 TTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTC-TCGGTCGAAC
* * * ** * *
14327 TTTCGAAGTTGACAAACTTTTATGAGTT-TTTTATAACATCGGTTCCATAAATTATTCAAGACGA
257 TTT--AACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGA
14391 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTTAGGAAATCGCATCATCT-GGTCTAAAT
320 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTT-GGAAATCGCATCAT-TAGGTCTAAAT
* * *
14455 AGTTGTCATTTTATAAACAACATTCGGTCTTTGAATTAAAAACT
383 AGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * * * * * *
14499 TATTTAGGTGATAATAGTTTCTCTCTTGGTTCTCGGTCGAACTTTCGAAGTTGATAGACTTTTAG
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* * * * * * * * *
14564 GAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGACCCATTCTTTTGTGCAATTTTTT
66 GAGTTCTTTTATAACTT-TGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT
* ** ** * * * **
14629 GAACATTCAATG-TCCGGGAAATTGCATCAATT-GTTCTAAACAGATTGTCATTTTGTAAAAAAC
130 GAACATTCCATGCT-TAGGAAATCACATC-TTTAGGTCTAAATAG-TTGTCATTTTGTAAACTAC
* * * *** *
14692 TTATGTTCTTTAAATTAAATTGTTATTTATGTGAGAATTGTTT-TTTCTTGGTTCTCGGTCGAAC
192 TTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAAC
*
14756 TTT--C--G---AAC--TT--GA---C----A-AACTTTTGTTCCATAAAGTATTCAAGACGATC
257 TTTAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATC
* * * * *
14802 CATTCCTTCGAGCAATTTTCCGAACATTCCATGCTTGGGAAATCGAATCATTTGATCTAAATATT
322 CATTCCTTCGAGCAATTTTCTGAACATTCCATGCTT-GGAAATCGCATCATTAGGTCTAAATAGT
*
14867 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAAT
386 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * *
14908 TATTTATGTGAGAATTGCTTCTTTCTTGGTTCTCGGCCGAA-ATTCGAACTTGAGAAACTTTTAC
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
* * * *** * * *
14972 TAGCTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGGCAATCCATTTCTTCGAGTAATTTTCA
66 GAGTTCTTTTATAAC-TTTGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT
* * ** * *
15037 GAATAGTCCATGCTCGGGAAATCACATCATTT-GGTCTAAATAGTTGTCATTTTATAAAATACTT
130 GAACATTCCATGCTTAGGAAATCACATC-TTTAGGTCTAAATAGTTGTCATTTTGTAAACTACTT
* * * * ** *
15101 TTCGTCTTTGAATTAAAAACTTATTTAGCTGAGAATAGTTTCTCTCTTGGTTCTTAGTTGAACTT
194 TTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTT
* * * * * * * ** * * *
15166 CCGAATTTGACAAAGTTTTACAAGCTCTTCTATAACATCGGTTCATTAAAGTATTTAAGAGGATC
259 --TAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATC
* *
15231 CATTCCTTC-A-CATAATTTT-TCGAACATTCCATACTTAGGAAATTGCATCA-TATGGTCTAAA
322 CATTCCTTCGAGC--AATTTTCT-GAACATTCCATGCTT-GGAAATCGCATCATTA-GGTCTAAA
* * *
15292 TAGTTGTCATTTTATAAACAACTTTTGGTCTTCGAATTAAAAACA
382 TAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * * * * * *
15337 TATTTAAGTGATAATAGTTCCTCTCTTGGATCTTA-GCCAAACTTTCGAAGTTAACAAACTTTTA
1 TATTTAGGTGAGAATTGTTTCTCTCTTGGTTC-TAGGCCGAACATCCGAACTTGACAAACTTTTA
* * * * *
15401 CGAGTTCTTTTTTAACTTGGGTTCCA-TAAAGTATTCAACACGATCCATTCCTTTGAGCAATTTT
65 CGAGTTCTTTTATAACTT-TGTT-CATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT
* * * ** * * *
15465 -TCAAACATTCTATGCTTGGGAAATCACATAAATT-GTTCCAAATAGATTGTCATTTTGTAAACA
128 CT-GAACATTCCATGCTTAGGAAATCACAT-CTTTAGGTCTAAATAG-TTGTCATTTTGTAAACT
* * * *
15528 ACTTTTGGTCTTTGAA-TAAAAATGTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTCGGTCA
190 ACTTTTGGTCTTTGAATTAAAAA-CTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCG
*
15592 AACTTCTGAACTTGACAAACTTTTACGAGTTCTTTTAAAACTTTTGTTCCTTAAAGTATTCAAGA
254 AACTT-T-AACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGA
* * * * *
15657 CGATCCATTCCTTCGTGCAGTTTTTTGAACATTCCATGCTTGGGAAATTGCATCATTTGGTCTAA
317 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTT-GGAAATCGCATCATTAGGTCTAA
* * *
15722 GTAGTTGTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAA-A
381 ATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * * ***
15767 TACTTTATGTGAGAATTCTTTCT-TCCTTGGTTCTCGACCAAAC-TTTAAACTTGACAAACTTTT
1 TA-TTTAGGTGAGAATTGTTTCTCT-CTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTT
* * *
15830 ACAAGTTCTTTTATAATTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
64 ACGAGTTCTTTTATAA-CTTTGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT
* * * * * * *
15895 -TCGTACAGTCCATGCTTGGGAAATCGCATCATTAGGACTAAATAGTTGTCATTTTGTAAACAAC
128 CT-GAACATTCCATGCTTAGGAAATCACATCTTTAGGTCTAAATAGTTGTCATTTTGTAAACTAC
* * * *
15959 TTTTGGTTTTTGAATTAAATACTTATTTAGGTGAGAATTATTTCTTTCTTTGTTCTCGG-C---C
192 TTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAAC
* *** * *
16020 --GAACTTGGGTAACTTTTACGAGTTCTTTTATAAC-TTCGATTCCTTAAAGTAATCAAGACGAT
257 TTTAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACGAT
* * *
16082 CCATTCCTTCGAGCAATTTT-TCGAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATA
321 CCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTTG-GAAATCGCATCATTAGGTCTAAATA
* *
16146 GTTGTTATTTTGTAAACAACTTTTGGTCTTTGAATTTAAAACT
384 GTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
*
16189 AATTTAGGTGAGAATTG
1 TATTTAGGTGAGAATTG
16206 AAAACAAGTT
Statistics
Matches: 10925, Mismatches: 2225, Indels: 1672
0.74 0.15 0.11
Matches are distributed among these distances:
398 7 0.00
399 205 0.02
400 73 0.01
401 88 0.01
402 365 0.03
403 64 0.01
404 207 0.02
405 50 0.00
406 302 0.03
407 60 0.01
408 137 0.01
409 265 0.02
410 471 0.04
411 371 0.03
412 133 0.01
413 238 0.02
414 18 0.00
415 13 0.00
416 16 0.00
417 27 0.00
418 26 0.00
419 94 0.01
420 291 0.03
421 504 0.05
422 222 0.02
423 257 0.02
424 59 0.01
425 210 0.02
426 566 0.05
427 281 0.03
428 600 0.05
429 1721 0.16
430 1424 0.13
431 774 0.07
432 47 0.00
433 8 0.00
434 27 0.00
435 13 0.00
436 14 0.00
437 9 0.00
438 11 0.00
439 13 0.00
440 15 0.00
441 16 0.00
442 3 0.00
443 7 0.00
444 2 0.00
445 1 0.00
446 23 0.00
447 14 0.00
448 20 0.00
449 59 0.01
450 35 0.00
451 105 0.01
452 180 0.02
453 20 0.00
454 21 0.00
455 11 0.00
456 20 0.00
457 12 0.00
458 3 0.00
459 9 0.00
460 17 0.00
461 20 0.00
462 9 0.00
463 14 0.00
464 1 0.00
465 5 0.00
466 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (426 bp):
TATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTAGGCCGAACATCCGAACTTGACAAACTTTTAC
GAGTTCTTTTATAACTTTGTTCATTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTG
AACATTCCATGCTTAGGAAATCACATCTTTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTTT
GGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTTTA
ACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATT
CCTTCGAGCAATTTTCTGAACATTCCATGCTTGGAAATCGCATCATTAGGTCTAAATAGTTGTCA
TTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
Found at i:4024 original size:189 final size:193
Alignment explanation
Indices: 3686--4071 Score: 462
Period size: 189 Copynumber: 2.0 Consensus size: 193
3676 TTTTTCAATT
*
3686 AAAAACTTATTTAGGTGAGAATTGTTTCTCTATTGGTTCTCAGCCGAACTTTCGAACTTGATAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTATTCGTTCTCAGCCGAACTTTCGAAC----TAAA
* * *
3751 CTTTTACGAGACCTTTTTTAACTTCTGTTCCTGAAAGAATTCAAGACGATCCATTCCTTTGAGCA
62 CTTTTACGAGACCTTTTATAACTTCTGTTCATGAAAGAATTCAAGACGATCCATTCCTTCGAGCA
* * * * *
3816 ATTTTTTGAACATTCCATGCTCGGGAAATCGCTTCACTT-GT-TCTAAATAGATTGTCATTTTGT
127 ATTTTCTGAACAGTCCATGCTAGGGAAATCACATCA-TTAGTCTCTAAATAG-TTGTCATTTTGT
3879 AAAA
190 AAAA
* * * *
3883 AAAAAGTTATTTATGTTAGAATTGTTTCTCTATTCGTTCTCAGCCGAAC-TT-G-AC-AAAGTTT
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTATTCGTTCTCAGCCGAACTTTCGAACTAAACTTT
* * * * * *
3944 TACGGGTA-CTTTTATAACTTTTGTTCATTAAAGTATTCAAGTCGATCCATTCCTTCGAGTAATT
66 TACGAG-ACCTTTTATAACTTCTGTTCATGAAAGAATTCAAGACGATCCATTCCTTCGAGCAATT
* *
4008 TTCTGTACAGTCCATGCTAGGGAAATCACATCATTAGGTCTCTAAATAGTTGTCATTTTTTAAA
130 TTCTGAACAGTCCATGCTAGGGAAATCACATCATTA-GTCTCTAAATAGTTGTCATTTTGTAAA
4072 CTACTTTTGG
Statistics
Matches: 164, Mismatches: 21, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
188 2 0.01
189 86 0.52
190 17 0.10
191 9 0.05
194 2 0.01
195 1 0.01
196 2 0.01
197 45 0.27
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (193 bp):
AAAAACTTATTTAGGTGAGAATTGTTTCTCTATTCGTTCTCAGCCGAACTTTCGAACTAAACTTT
TACGAGACCTTTTATAACTTCTGTTCATGAAAGAATTCAAGACGATCCATTCCTTCGAGCAATTT
TCTGAACAGTCCATGCTAGGGAAATCACATCATTAGTCTCTAAATAGTTGTCATTTTGTAAAA
Found at i:5165 original size:216 final size:215
Alignment explanation
Indices: 3926--5261 Score: 1337
Period size: 215 Copynumber: 6.2 Consensus size: 215
3916 TCGTTCTCAG
* * * *
3926 CCGAACTTGACAAAGTTTTACGGGTACTTTTATAACTTTTGTTCATTAAAGTATTCAAGTCGATC
1 CCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATC
* * **
3991 CATTCCTTCGAGTAATTTTCTGTACAGTCCATGCTAGGGAAATCACATCATTAGGTCTCTAAATA
66 CATTCCTTCGAGCAATTTTCTGAACAGTCCATGCTATAGAAATCACATCATTAGG--TCTAAATA
* * * * *
4056 GTTGTCATTTTTTAAACTACTTTTGGTCTTCGAATTAAAAACTTATTTAGATGAGAAATGTTTCC
129 GTTGTCATTTTGTAAACAACTTTTGGTCTTCGAATTAAAAACTTATTTAGGTGAGAATTGTTTCT
*
4121 CTTTTGGTTCTCGATCGAACTT
194 CTTTTGGTTCTCGGTCGAACTT
* * * * * *
4143 TCGAACTTGAAAAACTTTTACGAGTTCTTTTATAAC-TTTGATTCCTTAAACTATCCAAGATGAT
1 CCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTG-TTCATTAAAGTATTCAAGACGAT
* ** * * * *
4207 CCCTTCCTTCGAGCAATTTTAAGAACATTCCATGCTCTAGAAATCGCTTCATTTA-GTCTAAATA
65 CCATTCCTTCGAGCAATTTTCTGAACAGTCCATGCTATAGAAATCACATCA-TTAGGTCTAAATA
* * * * * ** * * *
4271 GTTGCCATTATATAAACAACTATTGATCTTTAAATTAAAAACTTATTCAAGTGAGAATAGTTTCT
129 GTTGTCATTTTGTAAACAACTTTTGGTCTTCGAATTAAAAACTTATTTAGGTGAGAATTGTTTCT
* * *
4336 C--TTGGTTCTAGGCCGAACAT
194 CTTTTGGTTCTCGGTCGAACTT
* * * ** * * *
4356 CCGAAGTTTACAAACTTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAATTATTCAAGACGAAC
1 CCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATC
* * * * * *
4421 CATTTCTTCGAGCAATTTTCTGAACATTCCAAGCT-TAGGAAATCTCATCTTTGGGTCTAAATAG
66 CATTCCTTCGAGCAATTTTCTGAACAGTCCATGCTATA-GAAATCACATCATTAGGTCTAAATAG
* * * *
4485 TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAAATTCTTTATGTGAGAATTGTTTCT
130 TTGTCATTTTGTAAACAACTTTTGGTCTTCGAATT-AAAAACTTATTTAGGTGAGAATTGTTTCT
*
4550 -TTCTTGGTTCTCGGACGAACTT
194 CTT-TTGGTTCTCGGTCGAACTT
** * ** *
4572 -TAAAATTGACAAACTTTTATAAGTTCTTTTATAACTTTTGTTCAATAAAGTATTCAAGACGATC
1 CCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATC
* * * *
4636 CATTCCTTCGAGTAATTTTCTGTACAGTCCATGCT-TGGGAAATCACATCATTAGGTCCAAATAG
66 CATTCCTTCGAGCAATTTTCTGAACAGTCCATGCTAT-AGAAATCACATCATTAGGTCTAAATAG
* * * * *
4700 TTGTCATTTTGTAAACTACTTTTTGTTTTTC-AATTAAAAACTTATTTAGTTG-GAAATTATTTC
130 TTGTCATTTTGTAAACAAC-TTTTGGTCTTCGAATTAAAAACTTATTTAGGTGAG-AATTGTTTC
* * *
4763 TCTATTCGTTCT---T---A--G
193 TCTTTTGGTTCTCGGTCGAACTT
* * * *
4778 CCGAACTTGACAAAGTTTTACGAGTACTTTTATAACTTTTGTTCATTAAAGTATTCAAGTCGAAC
1 CCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATC
* * * * *
4843 CATTCCTTCGAGTAATTTTTTGTACAGTCCATGC-ATGGGAAATCACATCATTAGGTCTGAATAG
66 CATTCCTTCGAGCAATTTTCTGAACAGTCCATGCTAT-AGAAATCACATCATTAGGTCTAAATAG
* * *
4907 TTGTCATTTTTTAAACTACTTTTGGTCTTCCAATTAAAAACTTATTTAGGTGAGAATTGTTTCTC
130 TTGTCATTTTGTAAACAACTTTTGGTCTTCGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTC
*
4972 TTTTGGTTCTCGGTTGAACTT
195 TTTTGGTTCTCGGTCGAACTT
* * * * *
4993 CCGAACTTAAAAAACTTTTACGAGTTAC-TTTATAATTTTTGATTCCTTAAACTATTCAAGACGA
1 CCGAACTTGACAAACTTTTACGAGTT-CTTTTATAACTTTTG-TTCATTAAAGTATTCAAGACGA
* ** * * * *
5057 TCCATTCCTTTGAGCAATTTTAAGAAAATTCCTTGCTATAGAAATCGCATCATTTA-GTCTAAAT
64 TCCATTCCTTCGAGCAATTTTCTGAACAGTCCATGCTATAGAAATCACATCA-TTAGGTCTAAAT
* * * * * * *
5121 AATTGCCATTATGTAAACAACTTTTGGTCTTCGAATTTAAAACTTTTTTAGGTGAGCATAGTTTC
128 AGTTGTCATTTTGTAAACAACTTTTGGTCTTCGAATTAAAAACTTATTTAGGTGAGAATTGTTTC
* * * *
5186 TCTCTTGTTTCTAGGCCGAACTT
193 TCTTTTGGTTCTCGGTCGAACTT
* * ** *
5209 TCGAAGTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
1 CCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCATTAAAGTA
5262 AATTTTCTGA
Statistics
Matches: 916, Mismatches: 173, Indels: 62
0.80 0.15 0.05
Matches are distributed among these distances:
206 9 0.01
207 170 0.19
208 2 0.00
210 1 0.00
212 4 0.00
213 146 0.16
214 55 0.06
215 233 0.25
216 198 0.22
217 95 0.10
218 3 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
CCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATC
CATTCCTTCGAGCAATTTTCTGAACAGTCCATGCTATAGAAATCACATCATTAGGTCTAAATAGT
TGTCATTTTGTAAACAACTTTTGGTCTTCGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCT
TTTGGTTCTCGGTCGAACTT
Found at i:6011 original size:215 final size:215
Alignment explanation
Indices: 5262--12078 Score: 4624
Period size: 215 Copynumber: 32.3 Consensus size: 215
5252 CCTTAAAGTA
* * * *
5262 AATTTTCTGAACATTCCAAGCTGAGGGAATCTCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
1 AATTTTCTGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
* * * * *
5327 ACAACTTTTGGTCTTTGAAATAAAAAATTCTTTATGTGAGAATTGTTTCT-TTCTTCGTTCTCGG
66 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCGG
* ** * * * * *
5391 TCGAACTT-TAAACTTGACAAACTTTTACAAGTTCTTTTATAACTTTTGTTCATTAAAGCACTCA
130 CCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* *
5455 GGACGATCCATTCTTTCGAGC
195 AGACGATCCATTCCTTCGAGC
* * * * * * *
5476 AATTTTC-CATACAGTCCATGCTTAGGAGATCACATCATTAGGCCTAAATAGTTGTCATTTTTTA
1 AATTTTCTGA-ACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * *
5540 AACTACTTTTGGTCTTTGAATAAAAAATTTATTTAGGTGAGAATTGTGTCTCTTTTGGTTCACGG
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGG
* * * *
5605 TCGAACTTCCGAACCTG-CAAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAACTATTC
130 CCGAACTTCCGAACTTGAC-AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* *
5669 AAGATGATCC-CTCCTTCGAGC
194 AAGACGATCCATTCCTTCGAGC
** * * * *
5690 AATTTTAAGAACATTCCATGCTCTA-GAAATCGCATCATTTAGTCTAAATAGTCGCCATTATGTA
1 AATTTTCTGAACATTCCATGCT-TAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * *
5754 AACAACTTTTGGTATTTAAATTAAAAACTTATTCAGGTGAGAATAGTTTCTCTTTTGGTTCTAGG
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGG
* * * * *
5819 CCGAACATCCGAAGTTGACAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAAATTATTCA
130 CCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
*
5884 AGACGAAT-CATTCCTTCGATC
195 AGACG-ATCCATTCCTTCGAGC
* *
5905 AATTTTCTGAACATTCCAAGCTTAGGAAATCTCATC-TTTGGGTCTAAATAGTTGTCATTTTGTA
1 AATTTTCTGAACATTCCATGCTTAGGAAATCGCATCATTT-GGTCTAAATAGTTGTCATTTTGTA
* * * *
5969 AACAACTTTTAGTCTTTGAATTAAAAAATTATTTATGTGAGAATTGTTT-TTTTCTTGGTTCTCG
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCG
* ** ** *
6033 GCCGAACTT--TAATCTTGACAAACTTTTATAAGTTCTTTTATAACTTTTTTTCATTAAAGTATT
129 GCCGAACTTCCGAA-CTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
*
6096 CAAGACGATCCATTCCTTCGAGA
193 CAAGACGATCCATTCCTTCGAGC
* * * * * * *
6119 AATTTTCTGTAC-TGTCCATTCTTGGGAAATCACATCATTAGGTTTAAATAGTTTTCATTTTGTA
1 AATTTTCTGAACAT-TCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * **
6183 AACTACTTTTGGTTTTTCAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTATTCATTCT---
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGG
* * * * * *
6245 -C--A-GT-CGAACTTGACAAAATTTTACGAGTTCTTTTTTAACTTTTGTTCCTTAATGAATTCA
130 CCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* *
6305 AGACGATCCATTCCTTCCAGA
195 AGACGATCCATTCCTTCGAGC
* * * ** * *
6326 AATTTT-TGGAACATTCCAAGC-TCGAAAAATCG-ATCACGTGTTCTAAATACATTGTCATTTTG
1 AATTTTCT-GAACATTCCATGCTTAG-GAAATCGCATCATTTGGTCTAAATA-GTTGTCATTTTG
* ** * * * * **** ** **
6388 TAAAAAAAATTT-AT-TTATG--TT-AGAA-TTGTTT--CT-TTCTTTG-TTCTCGATT-GAACT
63 TAAACAACTTTTGGTCTT-TGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCT
* * * * * *
6442 --TCCGAACTT--G------ACAAACTTTAACGAGTTCTTTTATAACTTTTGTTCATTAAAGAAC
127 CGGCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTAT
* * *
6497 TCAGGACGATCAATTCTTTCGAGC
192 TCAAGACGATCCATTCCTTCGAGC
* * * * * * *
6521 AATTTT-TCATACAGTCCATGCTTGGGAGATCACATCATTAGGTCTAAATAGTTGTCATTTTTTA
1 AATTTTCTGA-ACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
*
6585 AACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGG
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGG
* * * * * * * *
6650 TCGAACATCCAAACTTGAAAAACTTTTACGAGTTCTTTTATAACTTTGATTTCTTAAACTATTGA
130 CCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* *
6715 AGATGATCCATTCCTTCCAGC
195 AGACGATCCATTCCTTCGAGC
** * * *
6736 AATTTTAAGAACATTCCATGCTCTA-GAAATCGCATCATTTCGTCTAAATAGTTGTCATTATGCA
1 AATTTTCTGAACATTCCATGCT-TAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * *
6800 AACAACTTTTGGTCTATT-AATTAAAAACTTATTCAGGTGAGAATAGTTTCTCTCTTAGTTCTAG
65 AACAACTTTTGGTCT-TTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCG
* * * * *
6864 GCCGAACATCCGAAGTTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAGGTATTC
129 GCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * *
6929 AAGATGAACCATTCCTTCGAGA
194 AAGACGATCCATTCCTTCGAGC
* * * * *
6951 AATTTAT-TTAACATTTCAAGCTTAGGAAATCTCATCATTTGGCCTAAATAGTTGTCATTTTGTA
1 AATTT-TCTGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * *
7015 AACAACTTTTGGTCTTTGAATTAAAAAATTCTTTATGTGAGAATTGTTTCT-TTCTTGGTTCTCG
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCG
* ** * ** * *
7079 GTCGAACTT-TAAACTTTACAAACTTTTATAAGTTCTTTTATAACTTTTGTTCATTAAAGTATTC
129 GCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * *
7143 AAGATGATCAATTCCTTTGAGC
194 AAGACGATCCATTCCTTCGAGC
* * ** * * *
7165 AATTTTTTGAAAATTCCATGCTCGGGAAATCGCATCACTTGTTCTAAATACATTGTCATTTTGTA
1 AATTTTCTGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATA-GTTGTCATTTTGTA
* *** * * * * **** ** **
7230 AAAAAAAGTT-AT-TTATG--TT-AGAA-TTGTTT--CT-TTCTTTG-TTCTCAGTT-GAACT--
65 AACAACTTTTGGTCTT-TGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCG
** * * * * * *
7282 TTCGAACTTGACAAACTT----TA-----ACGAGTTCTTTTATAATTTTTGTTCATTAAAGTATT
129 GCCGAACTT-CCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* *
7338 CATGACGATCCATTCTTTCGAGC
193 CAAGACGATCCATTCCTTCGAGC
** * * * * * *
7361 AA-TTTCCCACACAGTCCATGC-TCGAGAGATCACATCATTAGGTCTAAATAGTTGTCATTTTTT
1 AATTTTCTGA-ACATTCCATGCTTAG-GAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGT
* * *
7424 AAACTACTTTTGGTCTTTAAATTAAAAACTTATTTAGGTTAGAATTGTTTCTCTTTTGGTTCTCG
64 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCG
** * * * *
7489 GTTGAACTTCCGAACTTGAAAAACTTTTACGATTTCTTTTATAACTTTGATTCCTTAAACTATTC
129 GCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* *
7554 AAGATGATCCATTGCTTCGAGC
194 AAGACGATCCATTCCTTCGAGC
** * *
7576 AATTTTAAGAACATTCCATGCTCTA-GAAATCGCATCATTTAGTCTAAATAGTTGTCATTATGTA
1 AATTTTCTGAACATTCCATGCT-TAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * ** *
7640 AACAACTTTTGGTCTATGAATTAAAAACTAATTTAGTTGAGAATAATTTCTCTCTTGGTTCT-GC
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCG-
* * * *
7704 GCCGAACTTTCGAAGTTGACAAGCTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTT
129 GCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
*
7769 AAGATGATCCATTCCTTCGAGC
194 AAGACGATCCATTCCTTCGAGC
* * * * * * * * **
7791 AATTTTCCGAACATTCCATGCTTTTACG-AGTTG-A-CA--AGCTTTTACGAG-T-TC--TTT-T
1 AATTTTCTGAACATTCCATGC--TTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGT
* * * * *
7846 --ACAACTTTTGGTCTATGAATTAAAAACTTATTCAGGTGAGAATAGTTTCTCTCTTGGTTCTAG
64 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCG
* ** * * * *
7909 GCCTAAAATCTGAAGTTGACAACCTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAGGTATTC
129 GCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * *
7974 AAGATGAACCATTCCTTCGAGA
194 AAGACGATCCATTCCTTCGAGC
* * * * *
7996 AATTTAT-TTAACATTCCAAGCTTAGGAAATCTCATCTTTTGGTCCAAATAGTTGTCATTTTGTA
1 AATTT-TCTGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * *
8060 AACAACTTTTTGTCTTTGAATTAAAAAATTCTTTATGTGAGAATTGTTTCT-TTCTTGGTTCTCA
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCG
** * * ** * *
8124 GCCGAACTT-TAAACTTTACAAACTTTAATAAGTTCTTTTATAACTTTTGTTCATTAAAGTATTC
129 GCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* *
8188 AAGACGATCCAATCCTTCGAGA
194 AAGACGATCCATTCCTTCGAGC
* * * *
8210 AATTTTTTG---A-T-C--G----GGAAATCGCATCACTTGTTCTAAATACATTGTCATTTTGTA
1 AATTTTCTGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATA-GTTGTCATTTTGTA
* *** * * * * **** ** **
8264 AAAAAAAGTT-AT-TTATG--TT-AGAA-TTGTTT--CT-TTCTTTG-TTCTCAATT-GAACT--
65 AACAACTTTTGGTCTT-TGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCG
*** * * * * * *
8316 TTTGAACTTGACAAACTT-------T--AACGAGTTCTTTTATAACTTTTGTTCATTAAATTATT
129 GCCGAACTT-CCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * *
8372 CAGGACGATCCATTCTTTCAAGC
193 CAAGACGATCCATTCCTTCGAGC
* * * * * * * * *
8395 AATTTGC-CACACAGTCCATGC-TCGAGAGATCACATCATTAGGTCTAAACAGTTGTCATTTTCT
1 AATTTTCTGA-ACATTCCATGCTTAG-GAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGT
* * *
8458 AAACTACTTTTGGTCTTTAAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTCGGTTCTCG
64 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCG
* * * * **
8523 GTCGAACTTTCGAACTTGAAAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAACAATTC
129 GCCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
*
8588 AAGATGATCCATTCCTTCGAGC
194 AAGACGATCCATTCCTTCGAGC
** * * * *
8610 AATTTTAAGAACATTCCATGCTCTA-GAAATCGCATCATTTAGTCTAAATAGTTGCCGTTATGTA
1 AATTTTCTGAACATTCCATGCT-TAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * * * *
8674 AACAACTTTTAGTCTTTAAATTAAAAACTTATTCAAGTGAGAATAGTTTCTCTCTTGGTTCTAGG
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGG
* * *
8739 CCGAACATCCGAAGTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
130 CCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* *
8804 AGACAAACCATTCCTTCGAGC
195 AGACGATCCATTCCTTCGAGC
* * * * *
8825 AATTTTCTGAACATTCCAAGCTGAGGGAATCTCATCATTTGGTCTAAGTAGTTGTCATTTTGTAA
1 AATTTTCTGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
* * *
8890 ACAACTTTTGGTCTTTGAATTAAAAAATTCTTTATGTGAGAATTGTTTCT-TTCTTGGTTCTCGG
66 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCGG
** * * * *
8954 CCGAACTT-TAAACTTGACAAACTTTTACAAGTTCTTTAATAACTTTTGTTCATTAAAGTATTCA
130 CCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
*
9018 AGACGAACCATTCCTTCGAGC
195 AGACGATCCATTCCTTCGAGC
* * * * * *
9039 ATTTTTTTGTACAGTCCATGCTT-GGAAAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTA
1 AATTTTCTGAACATTCCATGCTTAGG-AAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * ** * *
9103 AACAACTTTAGGTTTTTGAATTAAAAACTTATTTAGGTGAGAA-TAATTCTCTCTTGGTTCTGGG
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGG
* * * *
9167 CCGAACTTTCGAAGTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAGGTATTTA
130 CCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
**
9232 AGACGATCCATTCCTTTAAGC
195 AGACGATCCATTCCTTCGAGC
* * *
9253 AATTTTCCGTACATTCCATGCTT-GGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTGA
1 AATTTTCTGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
* * * * * *
9317 ACAACTTTTGGTCTTTGAATTAAAAAATTCTTTATGTGAGAATTGTTT-TTTTCTTAGTTCTCTG
66 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCGG
* ** * * * * *
9381 CCAAACTT-TAAACTTGACAAGA-TTTT-CAAGTTCTTTTATAAATTTTGTTCATTTAAGTATTC
130 CCGAACTTCCGAACTTGACAA-ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
**
9443 AAGGTGATCCATTCCTTC-AGC
194 AAGACGATCCATTCCTTCGAGC
* * * * * * * *
9464 AATTTAT-TGTACAGTCCATGCTTGGGAAATCACATTATTAGGTCTAAATTGTTGTCATTCTGTA
1 AATTT-TCTGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * **
9528 AACTACTTTTGGTTTTTCAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTATTGGTTCTCAA
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGG
* * **
9593 CCGAACTTCCGAACTTGATAAACTTTTACGAGTTATATTT-TAACTTCT-GTTCCTTAAAAAATT
130 CCGAACTTCCGAACTTGACAAACTTTTACGAGTTCT-TTTATAACTT-TGGTTCCTTAAAGTATT
*
9656 CAAGACAATCCATTCCTTCGAGC
193 CAAGACGATCCATTCCTTCGAGC
* ** * **
9679 AATTTTGTGAACATTCCATGCTCGGGAAATCGCATCACTTATTCTAAATAGATTGTCATTTTGTA
1 AATTTTCTGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTGTA
***** * * * * * * **** ** **
9744 AA-AAAAAAAGTTATTT--ATGTTAGAA-TTGTTT--CT-TTCTTTG-TTCTCGGTT-GAACT--
65 AACAACTTTTGGTCTTTGAAT-TAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCG
* ** * * * * * *
9798 TCTAAACTTGACAAACTT----TAC-----CGAGTTCTTTTATAACTTTTGTTCATTAAAGTTTT
129 GCCGAACTT-CCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * *
9854 CAGGACGATTCATTCTTTCGAGC
193 CAAGACGATCCATTCCTTCGAGC
* * * * * * * *
9877 AATTTAC-CATACAGTCCATGCTTTGGAGATCACATCATTAGGTCTAAATAGTTGTCATTTTCTA
1 AATTTTCTGA-ACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * *
9941 AACTACTTTTGGTCTTTGAAGTAAAAACTTACTTAGGTTAGAATAGTTTCTCTTTTGGTTCTCGG
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGG
* * * * * *
10006 TCGAACTTCCGAACTTGAAAAATTTTTACGAGTTCTTTTTTAACTTTGATTCCTTAAACTATTCA
130 CCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
*
10071 AGATGATCCATTCCTTCGAGC
195 AGACGATCCATTCCTTCGAGC
*** * * *
10092 AATTTTAAAAACATTCCATGCTTTA-GAAATAGCATCATTTAGTCTAAATAGTT-TCCATTATGT
1 AATTTTCTGAACATTCCATGC-TTAGGAAATCGCATCATTTGGTCTAAATAGTTGT-CATTTTGT
* * * ** * * *
10155 AAACAACTTTTGGTCTATGAATTATAAACTAATTTAGGTGAGAATAATTTCTCTCTTGGTTATGG
64 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCG
* * * * *
10220 GTCGAAATTTCGAAGTTGA-AAAGCTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTGTT
129 GCCGAACTTCCGAACTTGACAAA-CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* *
10284 TAAGACGGTCCATTCCTTCGAGC
193 CAAGACGATCCATTCCTTCGAGC
************************************************** **
10307 -ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACATTATT-TA
1 AATTTTCTGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATT-TTGTA
** * * * * * ** * * * *
10370 GTCTAAATAGTT-GCCATT--ATGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTG
65 AAC-AACT-TTTGGTCTTTGAAT-TAAA-AAC---T--TATTT-AGGTGAGAA-TTGTTT--CT-
* * * ** *** ** * *
10432 AGAATAGTTT-CTCTCTTGG-TTATGGGTCAAAATTTCGAAGTTGAAAAGCTTTTACGAGTTCTT
116 ---CT--TTTGGT-TCTCGGCCGA-ACTTCCGAACTT-G-A----CAAA-CTTTTACGAGTTCTT
* * *
10495 TTATAACTTTGGTTCCTTAAAGTGTTTAAGACGGTCCATTCCTTCGAGC
167 TTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
10544 AATTTT-TCGAACATTCCATGCTT-GGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
1 AATTTTCT-GAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * *
10607 AACAACTTTTGGTCTTTGAATTAAAAAATTCTTTATGTGAGAATTGTTTGT-TTCTTGGTTCTCT
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCG
* * * * * * * *
10671 TCCAAACTT--TATACTTGACAAAATTTT-CAAGTTCTTTTATAAATTTTGTTCATTAAAGTATT
129 GCCGAACTTCCGA-ACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
*
10733 CAAGATGATCCATTCCTTC-AGC
193 CAAGACGATCCATTCCTTCGAGC
* * * * * * * * * *
10755 AATTTAT-TGTATAGTCCGTGCTTGGGAAATCACATTATTAGGTCTAAATTGTTGTCATTCTGTA
1 AATTT-TCTGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * * * *
10819 AACTACTTTTGGTTTTTCAATTAACAACTTATTTAGGTGAGAATTGTTTCTCTATTAGTTCTCAG
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGG
* * * *
10884 CCGAACTTCCGAACTTGATAAACTTTTATGAGTTATATTT-TAACTTCT-GTTCCTTAAAGAATT
130 CCGAACTTCCGAACTTGACAAACTTTTACGAGTTCT-TTTATAACTT-TGGTTCCTTAAAGTATT
* *
10947 CAAGACTATCCATTCCTTCCAGC
193 CAAGACGATCCATTCCTTCGAGC
* ** * *
10970 AATTTTTTGAACATTCCATGCTCGGGAAATCGCATCACTTGTTCTAAATAGATTGTCATTTTGTA
1 AATTTTCTGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTGTA
*** * * * * * **** ** **
11035 AA-AA--AAAGGT-TATT-TATGTTAGAA-TTGTTT--CT-TTCTTTG-TTCTCGATT-GAACT-
65 AACAACTTTTGGTCT-TTGAAT-TAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTC
* * * * * * * *
11088 -TCCGAACTTGACAAACTT---TAA----T--GAGTTCTTTTATAACTTTTGTTCATTATAGCAT
128 GGCCGAACTT-CCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTAT
* *
11143 TCAGGACGATCCATTCTTTCGAGC
192 TCAAGACGATCCATTCCTTCGAGC
** * * * * * *
11167 AA-TTTCCCATACAGTCCATGCTTGGGAGATCACATCATTAGGTCTAAATAGTTGTCATTTTTTA
1 AATTTTCTGA-ACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * *
11231 AACTACTTTTTGTCTTTG-ATTAAAAACTTATTTAGGTGAGGATTGTTTCTCTTTTGCTTCTCGG
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGG
* * * * *
11295 TCAAACTTCCGAACTTGA-AAATTTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAACTATTC
130 CCGAACTTCCGAACTTGACAAA-CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
*
11359 AAGATGATCCATTCCTTCGAGC
194 AAGACGATCCATTCCTTCGAGC
** * * * * *
11381 AATTTTAAGAACATTCCATGCTCTA-GAAATCACATTATTTAGTCTAAATAGTTGCCATTATGTA
1 AATTTTCTGAACATTCCATGCT-TAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * *
11445 AACAACTTTTGGTCTTTGAATTAAAAACTTATTCAGGTGAGAATAGTTTTTCTCTTGGTTCTAGG
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGG
* * * *
11510 CCGAACATCCGAAGTTGACAAACTATTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
130 CCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* * *
11575 ACATGAACCATTCCTTCGAGC
195 AGACGATCCATTCCTTCGAGC
* * * * *
11596 AATTTTTTGAACATTCCAAGCTTAGGAAATCTCATCTTTTGGTCCAAATAGTTGTCATTTTGTAA
1 AATTTTCTGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
* * * ** *
11661 ACAACTTTTGGACTTTGAATTAAAAAATTGTTTACATGAGAATTGTTTCT-TTCTTGGTTCTCAG
66 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCGG
** ** * * *
11725 CCGAACTT-TAAACTTGACAAACTTTTATAAGTTCTTTTATAACTTTTGTTCATCAAAGTATTCA
130 CCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
*
11789 AGACGATCCATTCCTTCGAGT
195 AGACGATCCATTCCTTCGAGC
* * * * * * * *
11810 AATTTTCTGTACAGTCCATGCTTGGGAAATCACATTATTAGGTCTAAATTGTTGTCATTCTGTAA
1 AATTTTCTGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
* * * * * * *
11875 ACTACTTTTGGTTTTTCAATTAAAAACTTATTTAGATGAGAATTGTTTCTCTATTCGTTCTCAG-
66 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGGC
* * * * *
11939 -TAA------AACTTGACAAACCTTTACGAGTTATTTTTTAACTTCT--TCTCCTTAAAGAATTC
131 CGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTT-TGGT-TCCTTAAAGTATTC
* *
11995 AAGACGATCCATTCCTTCTAGT
194 AAGACGATCCATTCCTTCGAGC
* * * *
12017 AATTTTCTGAACATTCCATGC-TCGGAAAATCGCATCAATTGTTCTAAATAGATTGTCTTTTT
1 AATTTTCTGAACATTCCATGCTTAGG-AAATCGCATCATTTGGTCTAAATAG-TTGTCATTTT
12079 TCTCAGTTGA
Statistics
Matches: 5084, Mismatches: 1226, Indels: 592
0.74 0.18 0.09
Matches are distributed among these distances:
185 57 0.01
187 1 0.00
188 1 0.00
189 1 0.00
190 1 0.00
192 7 0.00
194 10 0.00
195 142 0.03
196 148 0.03
197 108 0.02
198 104 0.02
199 34 0.01
200 25 0.00
201 6 0.00
202 15 0.00
203 61 0.01
204 52 0.01
205 188 0.04
206 66 0.01
207 243 0.05
208 32 0.01
209 12 0.00
210 17 0.00
211 47 0.01
212 300 0.06
213 176 0.03
214 1284 0.25
215 1730 0.34
216 51 0.01
217 4 0.00
218 2 0.00
219 2 0.00
220 7 0.00
221 11 0.00
222 8 0.00
224 1 0.00
227 2 0.00
228 1 0.00
229 7 0.00
230 16 0.00
231 6 0.00
232 1 0.00
233 1 0.00
235 2 0.00
236 11 0.00
237 80 0.02
238 3 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
AATTTTCTGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
ACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGGC
CGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA
GACGATCCATTCCTTCGAGC
Found at i:7292 original size:625 final size:624
Alignment explanation
Indices: 6607--12073 Score: 4315
Period size: 625 Copynumber: 8.6 Consensus size: 624
6597 TCTTTGAATT
* * * *
6607 AAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCGGTCGAACATCCAAACTTGAAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCT-TTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAA
* * * * * *
6671 ACTTTTACGAGTTCTTTTATAACTTTGATTTCTTAAACTATTGAAGATGATCCATTCCTTCCAGC
65 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * *
6736 AATTTTAAGAACATTCCATGCTCTAGAAATCGCATCATTTCGTCTAAATAGTTGTCATTATGCAA
130 AATTTTAAGAACATTCCATGCT-TAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
* * * *
6801 ACAACTTTTGGTCTATT-AATTAAAAACTTATTCAGGTGAGAATAGTTTCTCTCTTAGTTCTAGG
194 ACAACTTTTGGTCT-TTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGG
* * *
6865 CCGAACATCCGAAGTTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAGGTATTCA
258 CCGAAC-TCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCA
* * * * * *
6930 AGATGAACCATTCCTTCGAG-AAATTTATTTAACATTTCAAGCTTAGGAAATCTCATCATTTGGC
322 AGATGATCCATTCCTTCGAGCAATTTTA-TTAACATTCCATGCTTAGGAAATCACATCATTTGGT
* * * *
6994 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAATTCTTTATGTGAGAAT
386 CTAAATAGTTGTCATTATGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAAT
* * * * **
7059 TGTTTCTTTCTTGGTTCTCGGTCGAACTTTAAACTTTACAAACTTTTATAAGTTCTTTTATAACT
451 TGTTTCTCTCTTGGTTCTCGGCCGAACTTTGAACTTGACAAACTTTTACGAGTTCTTTTATAACT
* * * * *
7124 TTTGTTCATTAAAGTATTCAAGATGATCAATTCCTTTGAGCAATTTTTTGAAAATTCCATGCTCG
516 TTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCG
7189 GGAAATCGCATCACTTGTTCTAAATACA-TTGTCATTTTGTAAA
581 GGAAATCGCATCACTTGTTCTAAATACATTTGTCATTTTGTAAA
* * * * * *
7232 AAAAAGTTATTTATGTTAGAATTGTTTCTTTCTTTGTTCTCAGTTGAACTTTCGAACTTGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAA
* * * * * *
7297 CTTTAACGAGTTCTTTTATAATTTTTGTTCATTAAAGTATTCATGACGATCCATTCTTTCGAGCA
66 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
** * * * * * * *
7362 ATTTCCCA-CACAGTCCATGCTCGAGAGATCACATCATTAGGTCTAAATAGTTGTCATTTTTTAA
131 ATTT-TAAGAACATTCCATGCT-TAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
* * * * *
7426 ACTACTTTTGGTCTTTAAATTAAAAACTTATTTAGGTTAGAATTGTTTCTCTTTTGGTTCTCGGT
194 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGC
* * * *
7491 TGAACTTCCGAACTTGAAAAACTTTTACGATTTCTTTTATAACTTTGATTCCTTAAACTATTCAA
259 CGAAC-TCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAA
* ** * *
7556 GATGATCCATTGCTTCGAGCAATTTTAAGAACATTCCATGCTCTA-GAAATCGCATCATTTAGTC
323 GATGATCCATTCCTTCGAGCAATTTTATTAACATTCCATGCT-TAGGAAATCACATCATTTGGTC
* * * *
7620 TAAATAGTTGTCATTATGTAAACAACTTTTGGTCTATGAATTAAAAACTAATTTAGTTGAGAATA
387 TAAATAGTTGTCATTATGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATT
* * *
7685 ATTTCTCTCTTGGTTCT-GCGCCGAACTTTCGAAGTTGACAAGCTTTTACGAGTTCTTTTATAAC
452 GTTTCTCTCTTGGTTCTCG-GCCGAACTTT-GAACTTGACAAACTTTTACGAGTTCTTTTATAAC
* * * **
7749 TTTGGTTCCTTAAAGTATTTAAGATGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTT
515 TTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGC--
* *** * * * * * * *
7814 TTACGAGTTGACAAGCTTTTACGAGTTCTTTTACA-ACTTTTGGTC--TATG-AATT
578 -T-CG-G--GA-AATCGCAT-C-ACTTGTTCTAAATACATTT-GTCATTTTGTAA-A
* * * * * * ** *
7867 AAAAACTTATTCAGGTGAGAATAGTTTCTCTCTTGGTTCTAGGCCTAA-AATCTGAAGTTGACAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTTTC-GAACTTGACAA
* * * *
7931 CCTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAGGTATTCAAGATGAACCATTCCTTCGAG-
65 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* ** * * * *
7995 AAATTTATTTAACATTCCAAGCTTAGGAAATCTCATCTTTTGGTCCAAATAGTTGTCATTTTGTA
130 AATTTTA-AGAACATTCCATGCTTA-GAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * * *
8060 AACAACTTTTTGTCTTTGAATTAAAAAATTCTTTATGTGAGAATTGTTTCTTTCTTGGTTCTCAG
193 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGG
*** * * ** *
8125 CCGAACTTTAAACTTTACAAACTTTAATAAGTTCTTTTATAACTTTTG-TTCATTAAAGTATTCA
258 CCGAACTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAAC-TTTGATTCCTTAAAGTATTCA
* * * * * * *
8189 AGACGATCCAATCCTTCGAGAAATTTT-TT--GA-T-C--G----GGAAATCGCATCACTTGTTC
322 AGATGATCCATTCCTTCGAGCAATTTTATTAACATTCCATGCTTAGGAAATCACATCATTTGGTC
* * * *
8243 TAAATA-----CA-T-TGT---C-A-TTTT-G----T-AA-AAAAAAGTTATTTATGTTAGAATT
387 TAAATAGTTGTCATTATGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATT
* * **** *
8289 GTTTCTTTCTTTGTTCTCAATTGAACTTTTGAACTTGACAAACTTTAACGAGTTCTTTTATAACT
452 GTTTCTCTCTTGGTTCTCGGCCGAAC-TTTGAACTTGACAAACTTTTACGAGTTCTTTTATAACT
* * * * * *** *
8354 TTTGTTCATTAAATTATTCAGGACGATCCATTCTTTCAAGCAA-TTTGCCACACAGTCCATGCTC
516 TTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGA-ACATTCCATGCTC
* * * * * *
8418 GAGAGATCACATCA-TTAGGTCTAAACAGTTGTCATTTTCTAAACTACTTTTGGTCTTTAAA
580 GGGAAATCGCATCACTT-GTTCT-AA-A--T-ACA-TTTGT---C-A-TTTT-G----TAAA
* *
8479 TTAAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TCGGTTCTCGGTCGAACTTTCGAACTTGAA
1 --AAAAACTTATTTAGGTGAGAATTGTTTCT-TTCTTGGTTCTCGGTCGAACTTTCGAACTTGAC
* ** *
8543 AAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAACAATTCAAGATGATCCATTCCTTCGA
63 AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * *
8608 GCAATTTTAAGAACATTCCATGCTCTAGAAATCGCATCATTTAGTCTAAATAGTTGCCGTTATGT
128 GCAATTTTAAGAACATTCCATGCT-TAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGT
* * * * * *
8673 AAACAACTTTTAGTCTTTAAATTAAAAACTTATTCAAGTGAGAATAGTTTCTCTCTTGGTTCTAG
192 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCG
* * *
8738 GCCGAACATCCGAAGTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
257 GCCGAAC-TCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTC
** * * * * * * *
8803 AAGACAAACCATTCCTTCGAGCAATTTTCTGAACATTCCAAGCTGAGGGAATCTCATCATTTGGT
321 AAGATGATCCATTCCTTCGAGCAATTTTATTAACATTCCATGCTTAGGAAATCACATCATTTGGT
* * * * *
8868 CTAAGTAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAATTCTTTATGTGAGAAT
386 CTAAATAGTTGTCATTATGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAAT
* * * *
8933 TGTTTCTTTCTTGGTTCTCGGCCGAACTTTAAACTTGACAAACTTTTACAAGTTCTTTAATAACT
451 TGTTTCTCTCTTGGTTCTCGGCCGAACTTTGAACTTGACAAACTTTTACGAGTTCTTTTATAACT
* * * * * *
8998 TTTGTTCATTAAAGTATTCAAGACGAACCATTCCTTCGAGCATTTTTTTGTACAGTCCATGCTTG
516 TTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCG
* * * * *
9063 GAAAATCACATCA-TTAGGTCTAAATAGTTGTCATTTTGTAAACAACTTTAGGTTTTTGAATT
581 GGAAATCGCATCACTT-GTTCTAAATA-----CA-TTTGT---C-A---T---TTTGT-AA-A
** * * * *
9125 AAAAACTTATTTAGGTGAGAA-TAATTCTCTCTTGGTTCTGGGCCGAACTTTCGAAGTTGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAA
* * **
9189 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAGGTATTTAAGACGATCCATTCCTTTAAGCA
66 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
** * * *
9254 ATTTTCCGTACATTCCATGCTTGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTGAAC
131 ATTTTAAGAACATTCCATGCTTAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAAC
* * * * * * * *
9319 AACTTTTGGTCTTTGAATTAAAAAATTCTTTATGTGAGAATTGTTTTTTTCTTAGTTCTCTGCCA
196 AACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCG
*** * * * *
9384 AACTTTAAACTTGACAAGA-TTTT-CAAGTTCTTTTATAAATTTTG-TTCATTTAAGTATTCAAG
261 AACTCCGAACTTGACAA-ACTTTTACGAGTTCTTTTAT-AACTTTGATTCCTTAAAGTATTCAAG
* * * * * *
9446 GTGATCCATTCCTTC-AGCAA-TTTATTGTACAGTCCATGCTTGGGAAATCACATTATTAGGTCT
324 ATGATCCATTCCTTCGAGCAATTTTATT-AACATTCCATGCTTAGGAAATCACATCATTTGGTCT
* * * * *
9509 AAATTGTTGTCATTCTGTAAACTACTTTTGGTTTTTCAATTAAAAACTTATTTAGGTGAGAATTG
388 AAATAGTTGTCATTATGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTG
* ** * * *
9574 TTTCTCTATTGGTTCTCAACCGAACTTCCGAACTTGATAAACTTTTACGAGTTATATTT-TAACT
453 TTTCTCTCTTGGTTCTCGGCCGAACTT-TGAACTTGACAAACTTTTACGAGTTCT-TTTATAACT
* ** * *
9638 TCTGTTCCTTAAAAAATTCAAGACAATCCATTCCTTCGAGCAATTTTGTGAACATTCCATGCTCG
516 TTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCG
* *
9703 GGAAATCGCATCACTTATTCTAAATAGA-TTGTCATTTTGTAAAAA
581 GGAAATCGCATCACTTGTTCTAAATACATTTGTCATTTTGT--AAA
* * * * * *
9748 AAAAAGTTATTTATGTTAGAATTGTTTCTTTCTTTGTTCTCGGTTGAAC-TTCTAAACTTGACAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTTTC-GAACTTGACAA
* * * * * *
9812 AC-TTTACCGAGTTCTTTTATAACTTTTGTTCATTAAAGTTTTCAGGACGATTCATTCTTTCGAG
65 ACTTTTA-CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
** * * * * * *
9876 CAA-TTTACCATACAGTCCATGCTTTGGAGATCACATCATTAGGTCTAAATAGTTGTCATTTTCT
129 CAATTTTAAGA-ACATTCCATGC-TTAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGT
* * * * * *
9940 AAACTACTTTTGGTCTTTGAAGTAAAAACTTACTTAGGTTAGAATAGTTTCTCTTTTGGTTCTCG
192 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCG
* * * * *
10005 GTCGAACTTCCGAACTTGAAAAATTTTTACGAGTTCTTTTTTAACTTTGATTCCTTAAACTATTC
257 GCCGAAC-TCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTC
** *
10070 AAGATGATCCATTCCTTCGAGCAATTTTAAAAACATTCCATGCTTTA-GAAAT-AGCATCATTTA
321 AAGATGATCCATTCCTTCGAGCAATTTTATTAACATTCCATGC-TTAGGAAATCA-CATCATTTG
* * *
10133 GTCTAAATAGTT-TCCATTATGTAAACAACTTTTGGTCTATGAATTATAAACTAATTTAGGTGAG
384 GTCTAAATAGTTGT-CATTATGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAG
** * * * * *
10197 AATAATTTCTCTCTTGGTTATGGGTCGAAATTTCGAAGTTGA-AAAGCTTTTACGAGTTCTTTTA
448 AATTGTTTCTCTCTTGGTTCTCGGCCGAACTTT-GAACTTGACAAA-CTTTTACGAGTTCTTTTA
* * * *
10261 TAACTTTGGTTCCTTAAAGTGTTTAAGACGGTCCATTCCTTCGAGCANNNNNNNNNNNNNNNNNN
511 TAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA------------------
**************************** * * *
10326 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACATTATTTAG-TCTAAATAGTTGCCATTAT
558 ----ATTTTTTGAACATTCCATGCTCGGGAAATCGCATCACTT-GTTCTAAATA-----CATT-T
*
10390 GTAAACAACTTTTGGTCTTTGAATT
612 GT---C-A-TTTT-G----T-AA-A
* * * * * * *
10415 AAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTATGGGTCAAAATTTCGAAGTTGA-AAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAA
* * *
10479 GCTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTGTTTAAGACGGTCCATTCCTTCGAGC
66 -CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
** *
10544 AATTTTTCGAACATTCCATGCTTGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAA
130 AATTTTAAGAACATTCCATGCTTAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAA
* * * * * **
10609 CAACTTTTGGTCTTTGAATTAAAAAATTCTTTATGTGAGAATTGTTTGTTTCTTGGTTCTCTTCC
195 CAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCC
* ** * * * *
10674 AAACT-TTATACTTGACAAAATTTT-CAAGTTCTTTTATAAATTTTG-TTCATTAAAGTATTCAA
260 GAACTCCGA-ACTTGACAAACTTTTACGAGTTCTTTTAT-AACTTTGATTCCTTAAAGTATTCAA
* * * * * * *
10736 GATGATCCATTCCTTC-AGCAA-TTTATTGTATAGTCCGTGCTTGGGAAATCACATTATTAGGTC
323 GATGATCCATTCCTTCGAGCAATTTTATT-AACATTCCATGCTTAGGAAATCACATCATTTGGTC
* * * * * *
10799 TAAATTGTTGTCATTCTGTAAACTACTTTTGGTTTTTCAATTAACAACTTATTTAGGTGAGAATT
387 TAAATAGTTGTCATTATGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATT
* * * * * * *
10864 GTTTCTCTATTAGTTCTCAGCCGAACTTCCGAACTTGATAAACTTTTATGAGTTATATTT-TAAC
452 GTTTCTCTCTTGGTTCTCGGCCGAACTT-TGAACTTGACAAACTTTTACGAGTTCT-TTTATAAC
* * * *
10928 TTCTGTTCCTTAAAGAATTCAAGACTATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGCTC
515 TTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTC
*
10993 GGGAAATCGCATCACTTGTTCTAAATAGA-TTGTCATTTTGTAAA
580 GGGAAATCGCATCACTTGTTCTAAATACATTTGTCATTTTGTAAA
* * * * * * *
11037 AAAAAGGTTATTTATGTTAGAATTGTTTCTTTCTTTGTTCTCGATTGAACTTCCGAACTTGACAA
1 AAAAA-CTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAA
* * * * * * * *
11102 ACTTTAATGAGTTCTTTTATAACTTTTGTTCATTATAGCATTCAGGACGATCCATTCTTTCGAGC
65 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
** * * * * * * *
11167 AATTTCCCA-TACAGTCCATGCTTGGGAGATCACATCATTAGGTCTAAATAGTTGTCATTTTTTA
130 AATTT-TAAGAACATTCCATGCTT-AGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * *
11231 AACTACTTTTTGTCTTTG-ATTAAAAACTTATTTAGGTGAGGATTGTTTCTCTTTTGCTTCTCGG
193 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGG
* * * *
11295 TCAAACTTCCGAACTTGA-AAATTTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAACTATTC
258 CCGAAC-TCCGAACTTGACAAA-CTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTC
** * *
11359 AAGATGATCCATTCCTTCGAGCAATTTTAAGAACATTCCATGCTCTA-GAAATCACATTATTTAG
321 AAGATGATCCATTCCTTCGAGCAATTTTATTAACATTCCATGCT-TAGGAAATCACATCATTTGG
* *
11423 TCTAAATAGTTGCCATTATGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCAGGTGAGAA
385 TCTAAATAGTTGTCATTATGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAA
* * * ** * *
11488 TAGTTTTTCTCTTGGTTCTAGGCCGAACATCCGAAGTTGACAAACTATTACGAGTTCTTTTATAA
450 TTGTTTCTCTCTTGGTTCTCGGCCGAAC-TTTGAACTTGACAAACTTTTACGAGTTCTTTTATAA
** * * * *
11553 CTTCGGTTCCTTAAAGTATTCAACATGAACCATTCCTTCGAGCAATTTTTTGAACATTCCAAGCT
514 CTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCT
** * ** * *
11618 TAGGAAATCTCATCTTTTGGTCCAAATAGTTGTCATTTTGTAAACAACTTTTGGACTTTGAATTA
579 CGGGAAATCGCATCACTTGTTCTAAATA-----CA-TTTGT---C-A-TTTT-G----T-AA--A
* ** * * *
11683 AAAAA-TTGTTTACATGAGAATTGTTTCTTTCTTGGTTCTCAGCCGAACTTT-AAACTTGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAA
** * * * *
11746 CTTTTATAAGTTCTTTTATAACTTTTGTTCATCAAAGTATTCAAGACGATCCATTCCTTCGAGTA
66 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
** * * * * * * * *
11811 ATTTTCTGTACAGTCCATGCTTGGGAAATCACATTATTAGGTCTAAATTGTTGTCATTCTGTAAA
131 ATTTTAAGAACATTCCATGCTT-AGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAA
* * * * * * *
11876 CTACTTTTGGTTTTTCAATTAAAAACTTATTTAGATGAGAATTGTTTCTCTATTCGTTCTCAG--
195 CAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCC
* * * * *
11939 TAA-----AACTTGACAAACCTTTACGAGTTATTTTTTAACTTCT--TCTCCTTAAAGAATTCAA
260 GAACTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTT-TGAT-TCCTTAAAGTATTCAA
* * * * * * * * *
11997 GACGATCCATTCCTTCTAGTAATTTTCTGAACATTCCATGC-TCGGAAAATCGCATCAATTGTTC
323 GATGATCCATTCCTTCGAGCAATTTTATTAACATTCCATGCTTAGG-AAATCACATCATTTGGTC
12061 TAAATAGATTGTC
387 TAAATAG-TTGTC
12074 TTTTTTCTCA
Statistics
Matches: 3810, Mismatches: 809, Indels: 434
0.75 0.16 0.09
Matches are distributed among these distances:
593 2 0.00
594 3 0.00
595 2 0.00
596 4 0.00
597 2 0.00
600 4 0.00
601 4 0.00
603 6 0.00
604 112 0.03
605 5 0.00
606 1 0.00
607 2 0.00
608 1 0.00
610 1 0.00
611 4 0.00
612 1 0.00
613 3 0.00
614 214 0.06
615 78 0.02
616 4 0.00
617 1 0.00
618 3 0.00
619 1 0.00
620 1 0.00
622 6 0.00
623 213 0.06
624 171 0.04
625 532 0.14
626 345 0.09
627 55 0.01
628 163 0.04
629 13 0.00
630 5 0.00
631 6 0.00
632 1 0.00
633 13 0.00
634 82 0.02
635 216 0.06
636 110 0.03
637 13 0.00
638 12 0.00
639 113 0.03
640 141 0.04
641 39 0.01
642 99 0.03
643 249 0.07
644 216 0.06
645 46 0.01
646 7 0.00
649 3 0.00
650 16 0.00
655 1 0.00
656 1 0.00
657 3 0.00
660 1 0.00
661 1 0.00
662 10 0.00
663 159 0.04
664 51 0.01
665 20 0.01
666 99 0.03
667 108 0.03
668 12 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (624 bp):
AAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAA
CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
ATTTTAAGAACATTCCATGCTTAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAAC
AACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCG
AACTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGAT
GATCCATTCCTTCGAGCAATTTTATTAACATTCCATGCTTAGGAAATCACATCATTTGGTCTAAA
TAGTTGTCATTATGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTT
CTCTCTTGGTTCTCGGCCGAACTTTGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGT
TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGGGAAA
TCGCATCACTTGTTCTAAATACATTTGTCATTTTGTAAA
Found at i:7381 original size:196 final size:193
Alignment explanation
Indices: 7037--7426 Score: 480
Period size: 196 Copynumber: 2.0 Consensus size: 193
7027 TCTTTGAATT
* * *
7037 AAAAAATTCTTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTTTAAACTTTACAAAC
1 AAAAAATTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTCAGTCGAACTTTAAACTTGACAAAC
* * *
7102 TTTTATAAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGATGATCAATTCCTTTGAGCAA
66 TTTAACAAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCAATTCCTTTGAGCAA
*** * * * *
7167 TTTTTTGAAAATTCCATGCTCGGGAAATCGCATCACTT-GTTCTAAATACATTGTCATTTTGTAA
131 TTTTCCCAAAAGTCCATGCTCGAGAAATCACATCA-TTAGGTCTAAATA-ATTGTCATTTTGTAA
* * * *
7231 AAAAAAGTTATTTATGTTAGAATTGTTTCTTTCTTTGTTCTCAGTTGAACTTTCGAACTTGACAA
1 AAAAAA-TTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTCAGTCGAACTTT-AAACTTGACAA
* * * *
7296 ACTTTAACGAGTTCTTTTATAATTTTTGTTCATTAAAGTATTCATGACGATCCATT-CTTTCGAG
64 ACTTTAACAAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCAATTCCTTT-GAG
* * * *
7360 CAA-TTTCCCACACAGTCCATGCTCGAGAGATCACATCATTAGGTCTAAATAGTTGTCATTTTTT
128 CAATTTTCCCA-AAAGTCCATGCTCGAGAAATCACATCATTAGGTCTAAATAATTGTCATTTTGT
7424 AA
192 AA
7426 A
1 A
7427 CTACTTTTGG
Statistics
Matches: 166, Mismatches: 25, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
194 6 0.04
195 65 0.39
196 95 0.57
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (193 bp):
AAAAAATTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTCAGTCGAACTTTAAACTTGACAAAC
TTTAACAAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCAATTCCTTTGAGCAA
TTTTCCCAAAAGTCCATGCTCGAGAAATCACATCATTAGGTCTAAATAATTGTCATTTTGTAA
Found at i:7664 original size:840 final size:843
Alignment explanation
Indices: 5262--16203 Score: 5738
Period size: 840 Copynumber: 12.9 Consensus size: 843
5252 CCTTAAAGTA
* * * *
5262 AATTTTCTGAACATTCCAAGCTGAGGGAATCTCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
1 AATTTTCTTAACATTCCATGCTTAGGAAATCTCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
* * * * * * *
5327 ACAACTTTTGGTCTTTGAAATAAAAAATTCTTTATGTGAGAATTGTTTCTTTCTTCGTTCTCGGT
66 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGC
* * * * * *
5392 CGAACTTTAAACTTGACAAACTTTTACAAGTTCTTTTATAACTTTTGTTCATTAAAGCACTCAGG
131 CGAACTTTGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAG
* ** * * ** * * *
5457 ACGATCCATTCTTTCGAGCAA-TTTTCCATACAGTCCATGCTTAGGAGATCACATCA-TTAGGCC
196 ACGATCCATTCCTTCGAGCAATTTTTTGA-ACATTCCAAGCTCGGGAAATCGCATCACTT-GGTC
* * *
5520 TAAATAGTTGTCATTTTTTAAACTACTTTTGGTCTTTGAATAAAAAATTTATTTAGGTGAGAATT
259 TAAATA-----CA-TTTGT--ACAACTTTT-G---TTGAATAAAAAA-TTATTTATGTGAGAATT
* * * * * *
5585 GTGTCTCTT-TTGGTTCACGGTCGAACTTCCGAACCTG-CAAAACTTTTACGAGTTCTTTTATAA
311 GTTTCT-TTCTTGGTTCTCGGTCGAACTTTCAAACTTGAC-AAACTTTAACGAGTTCTTTTATAA
* * * * * * *
5648 C-TTTGATTCCTTAAACTATTCAAGATGATCC-CTCCTTCGAGCAATTTTAAGAACATTCCATGC
374 CTTTTG-TTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCA-TACAGTCCATGC
* * * * * * *
5711 TCTAGAAATCGCATCATTTA-GTCTAAATAGTCGCCATTATGTAAACAACTTTTGGTATTTAAAT
437 TC-GGAAATCACATCA-TTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTAAAT
* * * * * * *
5775 TAAAAACTTATTCAGGTGAGAATAGTTTCTCTTTTGGTTCTAGGCCGAACATCCGAAGTTGACAA
500 TAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGGTCGAACTTCCGAACTTGAAAA
* * * * *
5840 ACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAAATTATTCAAGACGAAT-CATTCCTTCGAT
565 ACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAACTATTCAAGACG-ATCCATTCCTTCGAG
** * * * *
5904 CAATTTTCTGAACATTCCAAGCT-TAGGAAATCTCATC-TTTGGGTCTAAATAGTTGTCATTTTG
629 CAATTTTAAGAACATTCCATGCTCTA-GAAATCGCATCATTT-AGTCTAAATAGTTGTCATTATG
* * * * * * *
5967 TAAACAACTTTTAGTCTTTGAATTAAAAAATTATTTATGTGAGAATTGTTTTTTTCTTGGTTCTC
692 TAAACAACTTTTGGTCTATGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTC
* ** ** *
6032 GGCCGAACTT-TAATCTTGACAAACTTTTATAAGTTCTTTTATAACTTTTTTTCATTAAAGTATT
757 GGCCGAACTTCGAA-CTTGACAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATT
* *
6096 CAAGACGATCCATTCCTTCGAGA
821 CAAGATGATCCATTCCTTCGAGC
* * * * * *
6119 AATTTTCTGT-AC-TGTCCATTCTTGGGAAATCACATCATTAGGTTTAAATAGTTTTCATTTTGT
1 AATTTTCT-TAACAT-TCCATGCTTAGGAAATCTCATCATTTGGTCTAAATAGTTGTCATTTTGT
* * * * ** *
6182 AAACTACTTTTGGTTTTTCAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTATTCATTCTCA
64 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCG
* * * *
6247 GTCGAAC-TTG-AC---A-AAA-TTTTACGAGTTCTTTTTTAACTTTTGTTCCTTAATGAATTCA
129 GCCGAACTTTGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCA
* * * ** * *
6305 AGACGATCCATTCCTTCCAGAAATTTTTGGAACATTCCAAGCTCGAAAAATCG-ATCACGTGTTC
194 AGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCAAGCTCGGGAAATCGCATCACTTGGTC
* *
6369 TAAATACA-TTGT-C-A-TTTTG-T-AA-AAAAAATTTATTTATGTTAGAATTGTTTCTTTCTTT
259 TAAATACATTTGTACAACTTTTGTTGAATAAAAAA-TTATTTATGTGAGAATTGTTTCTTTCTTG
* * * *
6427 GTTCTCGATTGAACTTCCGAACTTGACAAACTTTAACGAGTTCTTTTATAACTTTTGTTCATTAA
323 GTTCTCGGTCGAACTTTCAAACTTGACAAACTTTAACGAGTTCTTTTATAACTTTTGTTCATTAA
* * * * * * *
6492 AGAACTCAGGACGATCAATTCTTTCGAGCAATTTTTCATACAGTCCATGCTTGGGAGATCACATC
388 AGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCATACAGTCCATGC-TCGGAAATCACATC
* *
6557 ATTAGGTCTAAATAGTTGTCATTTTTTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGG
451 ATTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTAAATTAAAAACTTATTTAGG
* *
6622 TGAGAATTGTTTCTCTTTTGGTTCTCGGTCGAACATCCAAACTTGAAAAACTTTTACGAGTTCTT
516 TGAGAATTGTTTCTCTTTTGGTTCTCGGTCGAACTTCCGAACTTGAAAAACTTTTACGAGTTCTT
* * * *
6687 TTATAACTTTGATTTCTTAAACTATTGAAGATGATCCATTCCTTCCAGCAATTTTAAGAACATTC
581 TTATAACTTTGATTCCTTAAACTATTCAAGACGATCCATTCCTTCGAGCAATTTTAAGAACATTC
* *
6752 CATGCTCTAGAAATCGCATCATTTCGTCTAAATAGTTGTCATTATGCAAACAACTTTTGGTCTAT
646 CATGCTCTAGAAATCGCATCATTTAGTCTAAATAGTTGTCATTATGTAAACAACTTTTGGTCTAT
* * * * * *
6817 TAATTAAAAACTTATTCAGGTGAGAATAGTTTCTCTCTTAGTTCTAGGCCGAACATCCGAAGTTG
711 GAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAAC-TTCGAACTTG
* * *
6882 ACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAGGTATTCAAGATGAACCATTCCTTC
775 ACAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATGATCCATTCCTTC
*
6947 GAGA
840 GAGC
* * *
6951 AATTTAT-TTAACATTTCAAGCTTAGGAAATCTCATCATTTGGCCTAAATAGTTGTCATTTTGTA
1 AATTT-TCTTAACATTCCATGCTTAGGAAATCTCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * *
7015 AACAACTTTTGGTCTTTGAATTAAAAAATTCTTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGG
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGG
* * * ** *
7080 TCGAACTTTAAACTTTACAAACTTTTATAAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAA
130 CCGAACTTTGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAA
* * * * * *
7145 GATGATCAATTCCTTTGAGCAATTTTTTGAAAATTCCATGCTCGGGAAATCGCATCACTTGTTCT
195 GACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCAAGCTCGGGAAATCGCATCACTTGGTCT
* *
7210 AAATACA-TTGT-C-A-TTTTG-T-AA-AAAAAAGTTATTTATGTTAGAATTGTTTCTTTCTTTG
260 AAATACATTTGTACAACTTTTGTTGAATAAAAAA-TTATTTATGTGAGAATTGTTTCTTTCTTGG
* * * *
7268 TTCTCAGTTGAACTTTCGAACTTGACAAACTTTAACGAGTTCTTTTATAATTTTTGTTCATTAAA
324 TTCTCGGTCGAACTTTCAAACTTGACAAACTTTAACGAGTTCTTTTATAACTTTTGTTCATTAAA
* * * * *
7333 GTATTCATGACGATCCATTCTTTCGAGCAATTTCCCACACAGTCCATGCTCGAGAGATCACATCA
389 GTATTCAAGACGATCCATTCCTTCGAGCAATTT-TCATACAGTCCATGCTCG-GAAATCACATCA
*
7398 TTAGGTCTAAATAGTTGTCATTTTTTAAACTACTTTTGGTCTTTAAATTAAAAACTTATTTAGGT
452 TTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTAAATTAAAAACTTATTTAGGT
* * *
7463 TAGAATTGTTTCTCTTTTGGTTCTCGGTTGAACTTCCGAACTTGAAAAACTTTTACGATTTCTTT
517 GAGAATTGTTTCTCTTTTGGTTCTCGGTCGAACTTCCGAACTTGAAAAACTTTTACGAGTTCTTT
* *
7528 TATAACTTTGATTCCTTAAACTATTCAAGATGATCCATTGCTTCGAGCAATTTTAAGAACATTCC
582 TATAACTTTGATTCCTTAAACTATTCAAGACGATCCATTCCTTCGAGCAATTTTAAGAACATTCC
7593 ATGCTCTAGAAATCGCATCATTTAGTCTAAATAGTTGTCATTATGTAAACAACTTTTGGTCTATG
647 ATGCTCTAGAAATCGCATCATTTAGTCTAAATAGTTGTCATTATGTAAACAACTTTTGGTCTATG
* * * *
7658 AATTAAAAACTAATTTAGTTGAGAATAATTTCTCTCTTGGTTCT-GCGCCGAACTTTCGAAGTTG
712 AATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCG-GCCGAAC-TTCGAACTTG
* * *
7722 ACAAGCTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTTAAGATGATCCATTCCTTC
775 ACAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATGATCCATTCCTTC
7787 GAGC
840 GAGC
** * * * * * * * **
7791 AATTTTCCGAACATTCCATGCTTTTACG-AGT-TGA-CA--AGCTTTTACGAG-T-TC--TTT-T
1 AATTTTCTTAACATTCCATGC--TTAGGAAATCTCATCATTTGGTCTAAATAGTTGTCATTTTGT
* * * *
7846 --ACAACTTTTGGTCTATGAATTAAAAACTTATTCAGGTGAGAATAGTTTCTCTCTTGGTTCTAG
64 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCG
* * * * * * *
7909 GCCTAAAATCTGAAGTTGACAACCTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAGGTATTC
129 GCC-GAACTTTGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTC
* * * ** * **
7974 AAGATGAACCATTCCTTCGAGAAATTTATTT-AACATTCCAAGCTTAGGAAATCTCATCTTTTGG
193 AAGACGATCCATTCCTTCGAGCAATTT-TTTGAACATTCCAAGCTCGGGAAATCGCATCACTTGG
* *
8038 TCCAAATAGTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAAATTCTTTATGTGAGAA
257 TCTAAATA-----CA-TTTGT--ACAAC-TTTTG---TTGAA-TAAAAAATTATTTATGTGAGAA
* * * **
8103 TTGTTTCTTTCTTGGTTCTCAGCCGAACTTT-AAACTTTACAAACTTTAATAAGTTCTTTTATAA
309 TTGTTTCTTTCTTGGTTCTCGGTCGAACTTTCAAACTTGACAAACTTTAACGAGTTCTTTTATAA
* * * *
8167 CTTTTGTTCATTAAAGTATTCAAGACGATCCAATCCTTCGAGAAATTTT--T----T-GAT-C-G
374 CTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCATACAGTCCATGCTC
* *
8223 GGAAATCGCATCACTT-GTTCTAAATA-----CA--TTGT---C-A-TTTT-G----TAAA--AA
439 GGAAATCACATCA-TTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTAAATTAA
* * * * ** * ** *
8268 AAAGTTATTTATGTTAGAATTGTTTCT-TTCTTTGTTCTCAATTGAACTTTTGAACTTGACAAAC
503 AAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCGGTCGAACTTCCGAACTTGAAAAAC
* * * * * *
8332 TTTAACGAGTTCTTTTATAACTTTTG-TTCATTAAATTATTCAGGACGATCCATTCTTTCAAGCA
567 TTTTACGAGTTCTTTTATAAC-TTTGATTCCTTAAACTATTCAAGACGATCCATTCCTTCGAGCA
** * * * * * * * *
8396 ATTTGCCA-CACAGTCCATGCTCGAGAGATCACATCA-TTAGGTCTAAACAGTTGTCATTTTCTA
631 ATTT-TAAGAACATTCCATGCTCTAGAAATCGCATCATTTA-GTCTAAATAGTTGTCATTATGTA
* * * *
8459 AACTACTTTTGGTCTTTAAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCT-TTCGGTTCTCG
694 AACAACTTTTGGTCTATGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTT-GGTTCTCG
* * **
8523 GTCGAACTTTCGAACTTGAAAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAACAATTC
758 GCCGAAC-TTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTC
8588 AAGATGATCCATTCCTTCGAGC
822 AAGATGATCCATTCCTTCGAGC
*** * * * * *
8610 AATTTTAAGAACATTCCATGCTCTA-GAAATCGCATCATTTAGTCTAAATAGTTGCCGTTATGTA
1 AATTTTCTTAACATTCCATGCT-TAGGAAATCTCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * * *
8674 AACAACTTTTAGTCTTTAAATTAAAAACTTATTCAAGTGAGAATAGTTTCTCTCTTGGTTCTAGG
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGG
** * **
8739 CCGAACATCCGAAGTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
130 CCGAAC-TTTGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCA
* * * * * *
8804 AGACAAACCATTCCTTCGAGCAATTTTCTGAACATTCCAAGCT-GAGGGAATCTCATCATTTGGT
194 AGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCAAGCTCG-GGAAATCGCATCACTTGGT
* *
8868 CTAAGTAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAATTCTTTATGTGAGAAT
258 CTAA--A--T-ACA-TTTGT--ACAACTTTT-G---TTGAA-TAAAAAATTATTTATGTGAGAAT
* * * *
8933 TGTTTCTTTCTTGGTTCTCGGCCGAACTTT-AAACTTGACAAACTTTTACAAGTTCTTTAATAAC
310 TGTTTCTTTCTTGGTTCTCGGTCGAACTTTCAAACTTGACAAACTTTAACGAGTTCTTTTATAAC
* * ** *
8997 TTTTGTTCATTAAAGTATTCAAGACGAACCATTCCTTCGAGCATTTTTTTGTACAGTCCATGCTT
375 TTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCA-ATTTTCATACAGTCCATGCTC
* * * *
9062 GGAAAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTAAACAACTTTAGGTTTTTGAATTAA
439 GG-AAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTAAATTAA
** * * * * * *
9127 AAACTTATTTAGGTGAGAA-TAATTCTCTCTTGGTTCTGGGCCGAACTTTCGAAGTTGACAAACT
503 AAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGGTCGAACTTCCGAACTTGAAAAACT
* ** * **
9191 TTTACGAGTTCTTTTATAACTTTGGTTCCTTAAGGTATTTAAGACGATCCATTCCTTTAAGCAAT
568 TTTACGAGTTCTTTTATAACTTTGATTCCTTAAACTATTCAAGACGATCCATTCCTTCGAGCAAT
** * * * * *
9256 TTTCCGTACATTCCATGCT-TGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTGAACA
633 TTTAAGAACATTCCATGCTCTAGAAATCGCATCATTTAGTCTAAATAGTTGTCATTATGTAAACA
* * * * * * * * * *
9320 ACTTTTGGTCTTTGAATTAAAAAATTCTTTATGTGAGAATTGTTTTTTTCTTAGTTCTCTGCCAA
698 ACTTTTGGTCTATGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGA
** * * * * *
9385 ACTTTAAACTTGACAAGA-TTTT-CAAGTTCTTTTATAAATTTTG-TTCATTTAAGTATTCAAGG
763 ACTTCGAACTTGACAA-ACTTTTACGAGTTCTTTTAT-AACTTTGATTCCTTAAAGTATTCAAGA
9447 TGATCCATTCCTTC-AGC
826 TGATCCATTCCTTCGAGC
* * * * * * *
9464 AATTTAT-TGT-ACAGTCCATGCTTGGGAAATCACATTATTAGGTCTAAATTGTTGTCATTCTGT
1 AATTT-TCT-TAACATTCCATGCTTAGGAAATCTCATCATTTGGTCTAAATAGTTGTCATTTTGT
* * * * *
9527 AAACTACTTTTGGTTTTTCAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTATTGGTTCTCA
64 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCG
* * * * * **
9592 ACCGAACTTCCGAACTTGATAAACTTTTACGAGTTATATTT-TAACTTCTGTTCCTTAAAAAATT
129 GCCGAACTT-TGAACTTGACAAACTTTTACGAGTTCT-TTTATAACTTTTGTTCCTTAAAGTATT
* * * **
9656 CAAGACAATCCATTCCTTCGAGCAATTTTGTGAACATTCCATGCTCGGGAAATCGCATCACTTAT
192 CAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCAAGCTCGGGAAATCGCATCACTTGG
* * * *
9721 TCTAAATAGA-TTGT-C-A-TTTTG-TAAAAAAAAAAGTTATTTATGTTAGAATTGTTTCTTTCT
257 TCTAAATACATTTGTACAACTTTTGTTGAATAAAAAA-TTATTTATGTGAGAATTGTTTCTTTCT
* * *
9781 TTGTTCTCGGTTGAAC-TTCTAAACTTGACAAACTTTACCGAGTTCTTTTATAACTTTTGTTCAT
321 TGGTTCTCGGTCGAACTTTC-AAACTTGACAAACTTTAACGAGTTCTTTTATAACTTTTGTTCAT
* * * * * * *
9845 TAAAGTTTTCAGGACGATTCATTCTTTCGAGCAATTTACCATACAGTCCATGCTTTGGAGATCAC
385 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT-TCATACAGTCCATGC-TCGGAAATCAC
* * * *
9910 ATCATTAGGTCTAAATAGTTGTCATTTTCTAAACTACTTTTGGTCTTTGAAGTAAAAACTTACTT
448 ATCATTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTAAATTAAAAACTTATTT
* * *
9975 AGGTTAGAATAGTTTCTCTTTTGGTTCTCGGTCGAACTTCCGAACTTGAAAAATTTTTACGAGTT
513 AGGTGAGAATTGTTTCTCTTTTGGTTCTCGGTCGAACTTCCGAACTTGAAAAACTTTTACGAGTT
* * *
10040 CTTTTTTAACTTTGATTCCTTAAACTATTCAAGATGATCCATTCCTTCGAGCAATTTTAAAAACA
578 CTTTTATAACTTTGATTCCTTAAACTATTCAAGACGATCCATTCCTTCGAGCAATTTTAAGAACA
* *
10105 TTCCATGCTTTAGAAATAGCATCATTTAGTCTAAATAGTT-TCCATTATGTAAACAACTTTTGGT
643 TTCCATGCTCTAGAAATCGCATCATTTAGTCTAAATAGTTGT-CATTATGTAAACAACTTTTGGT
* * * * * * *
10169 CTATGAATTATAAACTAATTTAGGTGAGAATAATTTCTCTCTTGGTTATGGGTCGAAATTTCGAA
707 CTATGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCG-AACTTCGAA
* * * * * *
10234 GTTGA-AAAGCTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTGTTTAAGACGGTCCATT
771 CTTGACAAA-CTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATGATCCATT
10298 CCTTCGAGC
835 CCTTCGAGC
**************************** * * *
10307 ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACATTATTTAGT
1 A----------------------ATTTTCTTAACATTCCATGCTTAGGAAATCTCATCATTTGGT
* *
10372 CTAAATAGTTGCCATTATGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAAT
44 CTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAAT
* * * * * * *
10437 AGTTTCTCTCTTGGTTATGGGTCAAAATTTCGAAGTTGA-AAAGCTTTTACGAGTTCTTTTATAA
109 TGTTTCTCTCTTGGTTCTCGGCCGAACTTT-GAACTTGACAAA-CTTTTACGAGTTCTTTTATAA
* * * * * *
10501 CTTTGGTTCCTTAAAGTGTTTAAGACGGTCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
172 CTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCAAGCT
* *
10566 -TGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
237 CGGGAAATCGCATCACTTGGTCTAAATA-----CA-TTTGT--ACAACTTTT-G---TTGAA-TA
* * * * *
10630 AAAAATTCTTTATGTGAGAATTGTTTGTTTCTTGGTTCTC-TTCCAAACTTT-ATACTTGACAAA
289 AAAAATTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGGT-CGAACTTTCAAACTTGACAAA
* * * * *
10693 ATTT-TCAAGTTCTTTTATAAATTTTGTTCATTAAAGTATTCAAGATGATCCATTCCTTC-AGCA
353 CTTTAACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
** * * * * * *
10756 ATTTATTGTATAGTCCGTGCTTGGGAAATCACATTATTAGGTCTAAATTGTTGTCATTCTGTAAA
418 ATTT-TCATACAGTCCATGC-TCGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTAAA
* * * * * * *
10821 CTACTTTTGGTTTTTCAATTAACAACTTATTTAGGTGAGAATTGTTTCTCTATTAGTTCTCAGCC
481 CTACTTTTGGTCTTTAAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGGTC
* * * **
10886 GAACTTCCGAACTTGATAAACTTTTATGAGTTATATTT-TAACTTCTG-TTCCTTAAAGAATTCA
546 GAACTTCCGAACTTGAAAAACTTTTACGAGTTCT-TTTATAACTT-TGATTCCTTAAACTATTCA
* * ** ** *
10949 AGACTATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCACTT-GTT
609 AGACGATCCATTCCTTCGAGCAATTTTAAGAACATTCCATGCTCTAGAAATCGCATCATTTAG-T
* * *
11013 CTAAATA---G--A-T-TGT---C-A-TTTT-G--TA--AA--AAAAAGGTTATTTATGTTAGAA
673 CTAAATAGTTGTCATTATGTAAACAACTTTTGGTCTATGAATTAAAAA-CTTATTTAGGTGAGAA
* * * *** * *
11059 TTGTTTCTTTCTTTGTTCTCGATTGAACTTCCGAACTTGACAAACTTTAATGAGTTCTTTTATAA
737 TAGTTTCTCTCTTGGTTCTCGGCCGAACTT-CGAACTTGACAAACTTTTACGAGTTCTTTTATAA
* * * * * *
11124 CTTTTG-TTCATTATAGCATTCAGGACGATCCATTCTTTCGAGC
801 C-TTTGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGC
** * * * * * *
11167 AA-TTTCCCATACAGTCCATGCTTGGGAGATCACATCATTAGGTCTAAATAGTTGTCATTTTTTA
1 AATTTTCTTA-ACATTCCATGCTTAGGAAATCTCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * *
11231 AACTACTTTTTGTCTTTG-ATTAAAAACTTATTTAGGTGAGGATTGTTTCTCTTTTGCTTCTCGG
65 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGG
* * * * *
11295 TCAAACTTCCGAACTTGA-AAATTTTTTACGAGTTCTTTTATAAC-TTTGATTCCTTAAACTATT
130 CCGAACTT-TGAACTTGACAAA-CTTTTACGAGTTCTTTTATAACTTTTG-TTCCTTAAAGTATT
* ** * ** * * * *
11358 CAAGATGATCCATTCCTTCGAGCAATTTTAAGAACATTCCATGCTCTAGAAATCACATTATTTAG
192 CAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCAAGCTCGGGAAATCGCATCACTTGG
* * *
11423 TCTAAATAGTTGCCATTATGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCAGGTGAGAA
257 TCTAAATA-----CATT-TGT--ACAACTTTT-G---TTGAA-TAAAAAATTATTTATGTGAGAA
* * * * * * *
11488 TAGTTT-TTCTCTTGGTTCTAGGCCGAACATCCGAAGTTGACAAACTATT-ACGAGTTCTTTTAT
309 TTGTTTCTT-TCTTGGTTCTCGGTCGAACTTTCAAACTTGACAAACT-TTAACGAGTTCTTTTAT
** * * * * * * *
11551 AACTTCGGTTCCTTAAAGTATTCAACATGAACCATTCCTTCGAGCAATTTT-TTGAACATTCCAA
372 AACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCAT--ACAGTCCAT
* * * * * * * *
11615 GCTTAGGAAATCTCATCTTTTGGTCCAAATAGTTGTCATTTTGTAAACAACTTTTGGACTTTGAA
435 GC-TCGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTAAA
* * ** * * ** *
11680 TTAAAAAATTGTTTACATGAGAATTGTTTCT-TTCTTGGTTCTCAGCCGAACTT-TAAACTTGAC
499 TTAAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCGGTCGAACTTCCGAACTTGAA
** * * *
11743 AAACTTTTATAAGTTCTTTTATAACTTTTG-TTCATCAAAGTATTCAAGACGATCCATTCCTTCG
563 AAACTTTTACGAGTTCTTTTATAAC-TTTGATTCCTTAAACTATTCAAGACGATCCATTCCTTCG
* ** * * * * * * *
11807 AGTAATTTTCTGTACAGTCCATGCT-TGGGAAATCACATTA-TTAGGTCTAAATTGTTGTCATTC
627 AGCAATTTTAAGAACATTCCATGCTCT-AGAAATCGCATCATTTA-GTCTAAATAGTTGTCATTA
* * * * * * * *
11870 TGTAAACTACTTTTGGTTTTTCAATTAAAAACTTATTTAGATGAGAATTGTTTCTCTATTCGTTC
690 TGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTC
* * * * * *
11935 TCAG--TAA-----AACTTGACAAACCTTTACGAGTTATTTTTTAACTTCT--TCTCCTTAAAGA
755 TCGGCCGAACTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTT-TGAT-TCCTTAAAGT
* * *
11991 ATTCAAGACGATCCATTCCTTCTAGT
818 ATTCAAGATGATCCATTCCTTCGAGC
* * * * *
12017 AATTTTCTGAACATTCCATGC-TCGGAAAATCGCATCAATTGTTCTAAATAGATTGTC-TTTT-T
1 AATTTTCTTAACATTCCATGCTTAGG-AAATCTCATCATTTGGTCTAAATAG-TTGTCATTTTGT
* * ** ** ** * ** * ** *
12079 --TC-TCAGTTGAACTTCCAAACTTGACAAAC---TTTA-ACGAG-TTATGTTATAACT-TTTGT
64 AAACAACTTTTGGTCTT-TGAA-TT-AAAAACTTATTTAGGTGAGAAT-TGTT-TCTCTCTTGGT
** * * ** * * * * **
12135 TCAT----TAAAGTATT-CAC--GACGATCCATTCATTCAAGCAATT-TTTCATACAGTCCATGC
124 TC-TCGGCCGAACT-TTGAACTTGAC-AAAC-TT--TT-ACG-AGTTCTTTTATA-ACT-TTTG-
*** * ** * * * ** * * ** *
12192 TT-GGGAAA-TCACATCATTA-GGTCTAAATAGTT-G-TC-ATTTTTTAAACTACTT--TTGGTC
178 TTCCTTAAAGT-A-TTCAAGACGATC-CATTCCTTCGAGCAATTTTTTGAAC-A-TTCCAAGCTC
** ** ** * * * * * * * * ** *
12249 TTTG-AAT-TAAAAACTT-ATTTAGATGAGAATTGTTTC-CCTCTTGGTTCTCG-ATCGAACA-T
238 -GGGAAATCGCATCACTTGGTCTAAAT-ACATTTG-TACAACT-TTTG-T-T-GAATAAAAAATT
*** * *** * ** ** * **
12308 -CCGAAGTTGA-AA-AACTT-TTAC--GAGTTCT-TTTATAACTTTGATTCCTT---AAACTATT
296 ATTTATG-TGAGAATTGTTTCTTTCTTG-GTTCTCGGTCGAACTTTCA-AACTTGACAAACT-TT
* ** * ** * ** * * * *
12363 CAA-GATGATCCATTCCTTCGAGCAATT-TTAAGAAAATTGCATGCTCTAGA-AATCGCA-TCAT
357 -AACGA-G-TTC-TT--TTATAACTTTTGTTCATTAAA--GTAT--TCAAGACGATC-CATTCCT
* * * ** * * * *
12424 T-TAGTCTAAATAGTTTCCATTA-TGTAAACAACTTTTGGACTTTGAATTTAAAACTTATTTAGG
411 TCGAG-C--AAT--TTT-CA-TACAGT---C--C--AT-G-CTCGGAA-ATCACA-TCA-TTAGG
* * * *
12487 T-GAGAATAGTT-TC-TCTCTTGGT----T-C--TAGGCCTTTCAAAGTTGACAAAC-T-TTTA-
457 TCTA-AATAGTTGTCAT-T-TT-GTAAACTACTTTTGGTCTTT-AAA-TT-AAAAACTTATTTAG
* * * ** ** * * *
12539 -CGAG--TTCTTT-TATAACTTCAGTTC-C--TTAAAGTATTC-AA---GACAAACCATTCCTT-
515 GTGAGAATTGTTTCTCT---TTTGGTTCTCGGTCGAACT-TCCGAACTTGA-AAAAC-TT--TTA
*** * ** ** *** * * * ** *
12592 CGAGCAATTTTCTGAACATTCCA-AGCTTAGGAA--ATCTCATCATTTGGTCTAAATAGTT-G-T
572 CGAGTTCTTTTAT-AAC-TTTGATTCCTTA--AACTAT-TCA--AGACGATC-CATTCCTTCGAG
* * * ** * * **** * * *
12652 CATTTTGTAAACAACTTTTGA-ACT-TTGAATTAAAAAAT-ACTTTATGT-GAGAATTGTT-TCT
629 CAATTT-T-AAGAACATTCCATGCTCTAGAA--ATCGCATCA-TTTA-GTCTA-AATAGTTGTCA
* *** * * ** * * * * **** *
12712 TTCTTGGTTCTCGAC---CGAACCT-TAAACTTGACAAACTT-TTACAAGTTCTTTTATAACTTT
687 TT-AT-GTAAACAACTTTTG-GTCTATGAA-TT-AAAAACTTATT--TAGGT-GAGAAT-AGTTT
* * * * * * **
12772 -TGTTCATTAAAGTAT-TCAAGACGATCCATTC---CTTCAAGCAATTTTCTATAC-AGTCCATG
743 CT-CTC-TT--GGT-TCTC-GGCCGA-AC-TTCGAACTT-GA-CAAACTT-T-TACGAGT---T-
** * * ** *** ** * * *
12831 CTTGGAAAATCATTTCATTAGGTCTAAA-TAGTTGTCATTTTG-TAAACTACTTTTG-G-
792 CTTTTATAA-C-TTTGATT-CCT-TAAAGTA--T-TCAAGATGATCCA-TTCCTTCGAGC
* ** * * *
12887 --TTTTCCAATTAAAAACTT--AT--TTAGGTAAGAAT-TGTTTCCCTTTCGGT-T--CTCG--G
1 AATTTT-C--TT-AACA-TTCCATGCTTAGG--A-AATCT-CAT-CATTT-GGTCTAAATAGTTG
* * * * *** ** *
12940 TCGAACTTATG-AACCTGGAAACTTTTACGAGTTCTTTCAAAACTTCGATTCCTTAAAGTA-TTC
55 TC--A-TTTTGTAAAC----AACTTTT--G-G-TCTTT--GAA-TT-AAAAACTT-ATTTAGGT-
* *** ** *** * * * *
13003 AAGACGATCCATTC-CT-TTGAGTAATTTTCCAAACTTTTGAAGTTAACAAACTTTTACGACTTC
103 GAGA--ATTGTTTCTCTCTTG-GTTCTCGGCCGAAC-TTTGAACTTGACAAACTTTTACGAGTTC
** * * **
13066 TTTTATAACTTCAGTTCCTGAAAGTATTCAAGACG----A-TCCTTCGAGCAATTTTCTGAATGT
164 TTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACAT
* * * * *
13126 TCCAAGCTCAGGAAATCGCATCATTTGGGCTAAATAGTTGTCATTTTATAAAAAAAACTTTTGGT
229 TCCAAGCTCGGGAAATCGCATCACTTGGTCTAAATA-----CA-TTTGT----ACAACTTTT-G-
* * * * * * *
13191 CTTTGAATTAAAAAACTTATTTAGGTGATAATAGTTTCTCTT-TAGGTTCTAGGCCGAACTTTCG
282 --TTGAA-TAAAAAA-TTATTTATGTGAGAATTGTTTCT-TTCTTGGTTCTCGGTCGAACTTTCA
* * * * * * *
13255 AACTTAAAAAACCTTT-ACGAGTTCTTTTTTAACTTTGGTTCCTTAAATTATTCAAGACGATCTA
342 AACTTGACAAA-CTTTAACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCCA
* * * * * * * ** *
13319 TACCTTCAAGGAATTTTTCAAACATTCCATTCTCAGAAAATTGCATCAATT-GTTCTAAATAGAT
406 TTCCTTCGAGCAA-TTTTCATACAGTCCATGCTC-GGAAATCACATC-ATTAGGTCTAAATAG-T
* * * *
13383 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAAGTAAGAATTGTTTCT-T
467 TGTCATTTTGTAAACTACTTTTGGTCTTTAAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCT
* * * * * *
13447 TCTAGGTTCTCGGCCGAACTTCCAAACTTGACAAACTTTTATGAGTTCTTTTATAACTTTTATTC
532 T-TTGGTTCTCGGTCGAACTTCCGAACTTGAAAAACTTTTACGAGTTCTTTTATAACTTTGATTC
* * * ** * * * *
13512 CTTAAAGTATTCAAGACGATCCATTCCTCCCGA-CCATTTTTCGAACAATACATACTCTGGAAAT
596 CTTAAACTATTCAAGACGATCCATTCCT-TCGAGCAATTTTAAGAACATTCCATGCTCTAGAAAT
* * * * *
13576 CGTATCATTTGGT-TCAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTT
660 CGCATCATTTAGTCT-AAATAGTTGTCATTATGTAAACAACTTTTGGTCTATGAATTAAAAACTT
* * * * * * * * * *
13640 GTTTAGGTGATAATAGTTCCTTTCTAGGTTCTCGACAGAACTTTTGAACTTGACAAACATTTAAG
724 ATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAAC-TTCGAACTTGACAAACTTTTACG
* * * * *
13705 AGTTCTTTGT-TGACTTCGATTTCTTAAAGTATTCAAGATGACCCATTCTTTCGCA-C
788 AGTTCTTT-TATAACTTTGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCG-AGC
** * *
13761 AATTTTCCAAACATTCCATGCTT-GAGAAATCAT-ATCATTTGTTCTAAACATA-TTGGCATTTT
1 AATTTTCTTAACATTCCATGCTTAG-GAAATC-TCATCATTTGGTCT-AA-ATAGTTGTCATTTT
* * * * * *
13823 GTAAACAACTTTTGGTCTTTAAATTTAAAAGTTATTTATGTGAGAATTGTTTCTTTCATGGTTCT
62 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCT
* * * *
13888 CGGTCGAACTTCTGAACTTGACAAACTATTACGAGTTGTTTTATAACTTTTATTCCTTAAAGTAT
127 CGGCCGAACTT-TGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTAT
* * * * ** * * * * * *
13953 TCAATACAATCCATTCCTTTGAGCCATTTTCCGAACAGTCCATGCTTGGGAAATCACATCATTTT
191 TCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCAAGCTCGGGAAATCGCATCACTTG
* * * *
14018 GTCTAAATAGTTGCCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGTGA
256 GTCTAAATA-----CA-TTTGT--ACAACTTTT-G---TTGAA-TAAAAAATTATTTATGTGAGA
* * * * *
14083 ATTGTTTCTTTCTTGGTTCTTGATCGAACTTTCGAACTTGACAAACTTTTACAAGTTCTTTTATA
308 ATTGTTTCTTTCTTGGTTCTCGGTCGAACTTTCAAACTTGACAAACTTTAACGAGTTCTTTTATA
** * * * * * *
14148 ACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGAAATTTT-TTGAACATTCCATG
373 ACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCAT--ACAGTCCATG
** * * *
14212 CTCGAGAAATTGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
436 CTCG-GAAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTAAAT
** * * * *
14277 TAAAAACTTATTTAGGTGAGAATAATTTCTCTCTTGGTTCAT-GGTCGAACTTTCGAAGTTGACA
500 TAAAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTC-TCGGTCGAACTTCCGAACTTGAAA
* * * * * *
14341 AACTTTTATGAGTT-TTTTATAACATCGGTTCCATAAATTATTCAAGACGATCCATTCCTTCGAG
564 AACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAACTATTCAAGACGATCCATTCCTTCGAG
** * * * *
14405 CAATTTTCTGAACATTCCATGCT-TAGGAAATCGCATCATCTGGTCTAAATAGTTGTCATTTTAT
629 CAATTTTAAGAACATTCCATGCTCTA-GAAATCGCATCATTTAGTCTAAATAGTTGTCATTATGT
* * * *
14469 AAACAACATTCGGTCTTTGAATTAAAAACTTATTTAGGTGATAATAGTTTCTCTCTTGGTTCTCG
693 AAACAACTTTTGGTCTATGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCG
* * * * * * * *
14534 GTCGAACTTTCGAAGTTGATAGACTTTTAGGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTC
758 GCCGAAC-TTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTC
* * * * *
14599 AAGACGACCCATTCTTTTGTGC
822 AAGATGATCCATTCCTTCGAGC
* ** * * *
14621 AATTTT-TTGAACATTCAATG-TCCGGGAAAT-TGCATCAATTGTTCTAAACAGATTGTCATTTT
1 AATTTTCTT-AACATTCCATGCT-TAGGAAATCT-CATCATTTGGTCTAAATAG-TTGTCATTTT
* * * * *** * *
14683 GTAAAAAACTTATGTTCTTTAAATTAAATTGTTATTTATGTGAGAATTGTTT-TTTCTTGGTTCT
62 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCT
* *
14747 CGGTCGAACTTT---C--G---AAC--TT--GA---C----A-AACTTTTGTTCCATAAAGTATT
127 CGGCCGAACTTTGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATT
** * * * * *
14792 CAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTTGGGAAATCGAATCATTTGA
192 CAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCAAGCTCGGGAAATCGCATCACTTGG
14857 TCTAAATATTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAATTATTTATGTGAGAA
257 TCTAAATA-----CA-TTTGT--ACAACTTTT-G---TTGAA-TAAAAAATTATTTATGTGAGAA
* * * * * * * *
14922 TTGCTTCTTTCTTGGTTCTCGGCCGAA-ATTCGAACTTGAGAAACTTTTACTAGCTCTTTTATAA
309 TTGTTTCTTTCTTGGTTCTCGGTCGAACTTTCAAACTTGACAAACTTTAACGAGTTCTTTTATAA
* * * * * * *
14986 CTTTTGTTCCTTAAAGTATTCAAGGCAATCCATTTCTTCGAGTAATTTTCAGAATAGTCCATGCT
374 CTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCA-TACAGTCCATGCT
* * * * *
15051 CGGGAAATCACATCATTTGGTCTAAATAGTTGTCATTTTATAAAATACTTTTCGTCTTTGAATTA
438 C-GGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTAAATTA
* * * ** * * * *
15116 AAAACTTATTTAGCTGAGAATAGTTTCTCTCTTGGTTCTTAGTTGAACTTCCGAATTTGACAAAG
502 AAAACTTATTTAGGTGAGAATTGTTTCTCTTTTGGTTCTCGGTCGAACTTCCGAACTTGAAAAAC
* * * * * * * * * *
15181 TTTTACAAGCTCTTCTATAACATCGGTTCATTAAAGTATTTAAGAGGATCCATTCCTTC-A-CAT
567 TTTTACGAGTTCTTTTATAACTTTGATTCCTTAAACTATTCAAGACGATCCATTCCTTCGAGC--
** * * * * * *
15244 AATTTTTCGAACATTCCATACT-TAGGAAATTGCATCATATGGTCTAAATAGTTGTCATTTTATA
630 AATTTTAAGAACATTCCATGCTCTA-GAAATCGCATCATTTAGTCTAAATAGTTGTCATTATGTA
* * * * * **
15308 AACAACTTTTGGTCT-TCGAATTAAAAACATATTTAAGTGATAATAGTTCCTCTCTTGGATCTTA
694 AACAACTTTTGGTCTAT-GAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCG
* * * * * * *
15372 GCCAAACTTTCGAAGTTAACAAACTTTTACGAGTTCTTTTTTAACTTGGGTTCCATAAAGTATTC
758 GCCGAAC-TTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTC
* * *
15437 AACACGATCCATTCCTTTGAGC
822 AAGATGATCCATTCCTTCGAGC
* * * * * * * *
15459 AATTTT-TCAAACATTCTATGCTTGGGAAATCACATAAATTGTTCCAAATAGATTGTCATTTTGT
1 AATTTTCT-TAACATTCCATGCTTAGGAAATCTCATCATTTGGTCTAAATAG-TTGTCATTTTGT
* *
15523 AAACAACTTTTGGTCTTTGAA-TAAAAATGTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTC
64 AAACAACTTTTGGTCTTTGAATTAAAAA-CTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTC
* * *
15587 GGTCAAACTTCTGAACTTGACAAACTTTTACGAGTTCTTTTAAAACTTTTGTTCCTTAAAGTATT
128 GGCCGAACTT-TGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATT
* * * * * *
15652 CAAGACGATCCATTCCTTCGTGCAGTTTTTTGAACATTCCATGCTTGGGAAATTGCATCATTTGG
192 CAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCAAGCTCGGGAAATCGCATCACTTGG
*
15717 TCTAAGTAGTTGTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAAA-TACTTTATGTGAGA
257 TCTAA--A--T-ACA-TTTGT--ACAACTTTT-G---TTGAA-TAAAAAATTA-TTTATGTGAGA
* * ** * * *
15781 ATTCTTTCTTCCTTGGTTCTCGACCAAACTTT-AAACTTGACAAACTTTTACAAGTTCTTTTATA
308 ATTGTTTCTTTCTTGGTTCTCGGTCGAACTTTCAAACTTGACAAACTTTAACGAGTTCTTTTATA
* *
15845 ATTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGTACAGTCCATGC
373 ACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCATACAGTCCATGC
* * * * * *
15910 TTGGGAAATCGCATCATTAGGACTAAATAGTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATT
437 -TCGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTAAATT
* * * ***
15975 AAATACTTATTTAGGTGAGAATTATTTCT-TTCTTTGTTCTC-G--G-----CCGAACTTGGGTA
501 AAAAACTTATTTAGGTGAGAATTGTTTCTCTT-TTGGTTCTCGGTCGAACTTCCGAACTTGAAAA
* * *
16031 ACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTAATCAAGACGATCCATTCCTTCGAGC
565 ACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAACTATTCAAGACGATCCATTCCTTCGAGC
** * * * * *
16096 AATTTTTCGAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTGTTATTTTGTAA
630 AATTTTAAGAACATTCCATGCTCTAGAAATCGCATCATTTAGTCTAAATAGTTGTCATTATGTAA
* * *
16161 ACAACTTTTGGTCTTTGAATTTAAAACTAATTTAGGTGAGAAT
695 ACAACTTTTGGTCTATGAATTAAAAACTTATTTAGGTGAGAAT
16204 TGAAAACAAG
Statistics
Matches: 7850, Mismatches: 1613, Indels: 1249
0.73 0.15 0.12
Matches are distributed among these distances:
817 2 0.00
818 11 0.00
819 303 0.04
820 8 0.00
821 4 0.00
822 5 0.00
823 1 0.00
824 1 0.00
825 1 0.00
826 14 0.00
827 4 0.00
828 16 0.00
829 330 0.04
830 161 0.02
831 415 0.05
832 198 0.03
833 21 0.00
834 14 0.00
835 10 0.00
836 25 0.00
837 406 0.05
838 807 0.10
839 258 0.03
840 835 0.11
841 153 0.02
842 67 0.01
843 34 0.00
844 36 0.00
845 54 0.01
846 59 0.01
847 42 0.01
848 27 0.00
849 114 0.01
850 222 0.03
851 26 0.00
852 169 0.02
853 11 0.00
854 215 0.03
855 51 0.01
856 26 0.00
857 210 0.03
858 134 0.02
859 77 0.01
860 769 0.10
861 143 0.02
862 143 0.02
863 33 0.00
864 34 0.00
865 230 0.03
866 13 0.00
867 4 0.00
868 12 0.00
869 5 0.00
870 16 0.00
871 25 0.00
872 37 0.00
873 16 0.00
874 14 0.00
875 9 0.00
876 15 0.00
877 3 0.00
878 224 0.03
879 56 0.01
880 15 0.00
881 40 0.01
882 15 0.00
883 13 0.00
884 16 0.00
885 14 0.00
886 23 0.00
887 19 0.00
888 19 0.00
889 27 0.00
890 30 0.00
891 41 0.01
892 26 0.00
893 26 0.00
894 11 0.00
895 22 0.00
896 21 0.00
897 9 0.00
898 7 0.00
899 15 0.00
900 6 0.00
901 8 0.00
902 9 0.00
903 8 0.00
904 3 0.00
905 11 0.00
906 9 0.00
907 2 0.00
908 5 0.00
909 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (843 bp):
AATTTTCTTAACATTCCATGCTTAGGAAATCTCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
ACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGC
CGAACTTTGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAG
ACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCAAGCTCGGGAAATCGCATCACTTGGTCTA
AATACATTTGTACAACTTTTGTTGAATAAAAAATTATTTATGTGAGAATTGTTTCTTTCTTGGTT
CTCGGTCGAACTTTCAAACTTGACAAACTTTAACGAGTTCTTTTATAACTTTTGTTCATTAAAGT
ATTCAAGACGATCCATTCCTTCGAGCAATTTTCATACAGTCCATGCTCGGAAATCACATCATTAG
GTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGTCTTTAAATTAAAAACTTATTTAGGTGAGA
ATTGTTTCTCTTTTGGTTCTCGGTCGAACTTCCGAACTTGAAAAACTTTTACGAGTTCTTTTATA
ACTTTGATTCCTTAAACTATTCAAGACGATCCATTCCTTCGAGCAATTTTAAGAACATTCCATGC
TCTAGAAATCGCATCATTTAGTCTAAATAGTTGTCATTATGTAAACAACTTTTGGTCTATGAATT
AAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCGGCCGAACTTCGAACTTGACAAAC
TTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGC
Found at i:11937 original size:214 final size:214
Alignment explanation
Indices: 11055--12078 Score: 986
Period size: 214 Copynumber: 4.8 Consensus size: 214
11045 TATTTATGTT
* * ** * *
11055 AGAATTGTTTCTTTCTTTGTTCTC-GATTGAACTTCCGAACTTGACAAACTTTAATGAGTTCTTT
1 AGAATTGTTTCTCTCTTGGTTCTCAG-CCGAACTT-CAAACTTGACAAACTTTTATGAGTTCTTT
* * * * * ** *
11119 TATAACTTTTGTTCATTATAGCATTCAGGACGATCCATTCTTTCGAGCAA-TTTCCCATACAGTC
64 TATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGA-ACATTC
* * * * *
11183 CATGCTTGGGAGATCACATCATTAGGTCTAAATAGTTGTCATTTTTTAAACTACTTTTTGTCTTT
128 CATGCTTGGGAAATCACATTATTAGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTT
*
11248 G-ATTAAAAACTTATTTAGGTG
193 GAATTAAAAACTTATTTAGATG
* * * * * * * * *
11269 AGGATTGTTTCTCTTTTGCTTCTCGGTCAAACTTCCGAACTTGA-AAATTTTTTACGAGTTCTTT
1 AGAATTGTTTCTCTCTTGGTTCTCAGCCGAACTT-CAAACTTGACAAA-CTTTTATGAGTTCTTT
* * **
11333 TATAAC-TTTGATTCCTTAAACTATTCAAGATGATCCATTCCTTCGAGCAATTTTAAGAACATTC
64 TATAACTTTTG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTC
* * *
11397 CATGCTCT-AGAAATCACATTATTTA-GTCTAAATAGTTGCCATTATGTAAACAACTTTTGGTCT
128 CATGCT-TGGGAAATCACATTA-TTAGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCT
* *
11460 TTGAATTAAAAACTTATTCAGGTG
191 TTGAATTAAAAACTTATTTAGATG
* * * * * * *
11484 AGAATAGTTTTTCTCTTGGTTCT-AGGCCGAACATCCGAAGTTGACAAACTATTACGAGTTCTTT
1 AGAATTGTTTCTCTCTTGGTTCTCA-GCCGAAC-TTCAAACTTGACAAACTTTTATGAGTTCTTT
** * * * *
11548 TATAACTTCGGTTCCTTAAAGTATTCAACATGAACCATTCCTTCGAGCAATTTTTTGAACATTCC
64 TATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCC
* * * * * *
11613 AAGCTTAGGAAATCTCATCT-TTTGGTCCAAATAGTTGTCATTTTGTAAACAACTTTTGGACTTT
129 ATGCTTGGGAAATCACAT-TATTAGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTT
* * *
11677 GAATTAAAAAATTGTTTACATG
193 GAATTAAAAACTTATTTAGATG
* * *
11699 AGAATTGTTTCTTTCTTGGTTCTCAGCCGAACTTTAAACTTGACAAACTTTTATAAGTTCTTTTA
1 AGAATTGTTTCTCTCTTGGTTCTCAGCCGAACTTCAAACTTGACAAACTTTTATGAGTTCTTTTA
* * * * *
11764 TAACTTTTGTTCATCAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTCTGTACAGTCCAT
66 TAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCAT
* * * * *
11829 GCTTGGGAAATCACATTATTAGGTCTAAATTGTTGTCATTCTGTAAACTACTTTTGGTTTTTCAA
131 GCTTGGGAAATCACATTATTAGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
11894 TTAAAAACTTATTTAGATG
196 TTAAAAACTTATTTAGATG
* * * * * * *
11913 AGAATTGTTTCTCTATTCGTTCTCA---G----TAAAACTTGACAAACCTTTACGAGTTATTTTT
1 AGAATTGTTTCTCTCTTGGTTCTCAGCCGAACTTCAAACTTGACAAACTTTTATGAGTTCTTTTA
* * * *
11971 TAACTTCTT-CTCCTTAAAGAATTCAAGACGATCCATTCCTTCTAGTAATTTTCTGAACATTCCA
66 TAACTT-TTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCA
* * * * * *
12035 TGCTCGGAAAATCGCATCAATT-GTTCTAAATAGATTGTCTTTTT
130 TGCTTGGGAAATCACAT-TATTAGGTCTAAATAG-TTGTCATTTT
12079 TCTCAGTTGA
Statistics
Matches: 670, Mismatches: 121, Indels: 44
0.80 0.14 0.05
Matches are distributed among these distances:
207 103 0.15
208 13 0.02
211 1 0.00
213 8 0.01
214 316 0.47
215 221 0.33
216 8 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (214 bp):
AGAATTGTTTCTCTCTTGGTTCTCAGCCGAACTTCAAACTTGACAAACTTTTATGAGTTCTTTTA
TAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCAT
GCTTGGGAAATCACATTATTAGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
TTAAAAACTTATTTAGATG
Found at i:12149 original size:154 final size:154
Alignment explanation
Indices: 11941--12233 Score: 371
Period size: 154 Copynumber: 1.9 Consensus size: 154
11931 GTTCTCAGTA
* * *
11941 AAACTTGACAAACCTTTACGAGTTATTTTTTAACTTCTTCTCCTTAAAGAATTCAAGACGATCCA
1 AAACTTGACAAACCTTTACGAGTTATGTTATAACTTCTTCTCATTAAAGAATTCAAGACGATCCA
* * * * * * *
12006 TTCCTTCTAGTAATTTTCTGA-ACATTCCATGCTCGGAAAATCGCATCAATT-GTTCTAAATAGA
66 TTCATTCAAGCAATTTT-TCATACAGTCCATGCTCGGAAAATCACATC-ATTAGGTCTAAATAG-
12069 TTGTC-TTTTTTCTCAGTTGAACTTCC
128 TTGTCATTTTTTCTCAGTTGAACTTCC
* * *
12095 AAACTTGACAAA-CTTTAACGAGTTATGTTATAACTT-TTGTTCATTAAAGTATTCACGACGATC
1 AAACTTGACAAACCTTT-ACGAGTTATGTTATAACTTCTT-CTCATTAAAGAATTCAAGACGATC
* *
12158 CATTCATTCAAGCAATTTTTCATACAGTCCATGCTTGGGAAATCACATCATTAGGTCTAAATAGT
64 CATTCATTCAAGCAATTTTTCATACAGTCCATGCTCGGAAAATCACATCATTAGGTCTAAATAGT
12223 TGTCATTTTTT
129 TGTCATTTTTT
12234 AAACTACTTT
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
153 16 0.13
154 103 0.87
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.39
Consensus pattern (154 bp):
AAACTTGACAAACCTTTACGAGTTATGTTATAACTTCTTCTCATTAAAGAATTCAAGACGATCCA
TTCATTCAAGCAATTTTTCATACAGTCCATGCTCGGAAAATCACATCATTAGGTCTAAATAGTTG
TCATTTTTTCTCAGTTGAACTTCC
Found at i:12814 original size:214 final size:215
Alignment explanation
Indices: 12095--13019 Score: 1028
Period size: 214 Copynumber: 4.3 Consensus size: 215
12085 TTGAACTTCC
* * * * *
12095 AAACTTGACAAACTTTAACGAGTTATGTTATAACTTTTGTTCATTAAAGTATTCACGACGATCCA
1 AAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCA
* * * *
12160 TTCATTCAAGCAATTTT-TCATACAGTCCATGCTTGGGAAATCACATCATTAGGTCTAAATAGTT
66 TTCCTTCAAGCAATTTTCTGATACAGTCCATGCTTAGGAAATCTCATCATTAGGTCTAAATAGTT
* * * * *
12224 GTCATTTTTTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGATGAGAATTGTTTCCCTC
131 GTCATTTTGTAAACAACTTTTGGACTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTC
* *
12289 TTGGTTCTCGATCGAACATCC
196 TTGGTTCTCGATCGAACCT-T
* * * * *
12310 GAAGTTGAAAAACTTTTACGAGTTCTTTTATAAC-TTTGATTCCTTAAACTATTCAAGATGATCC
1 AAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACGATCC
* ** * * * *
12374 ATTCCTTCGAGCAATTTTAAGA-AAATTGCATGCTCTA-GAAATCGCATCATTTA-GTCTAAATA
65 ATTCCTTCAAGCAATTTTCTGATACAGTCCATGCT-TAGGAAATCTCATCA-TTAGGTCTAAATA
* * *
12436 GTT-TCCATTATGTAAACAACTTTTGGACTTTGAATTTAAAACTTATTTAGGTGAGAATAGTTTC
128 GTTGT-CATTTTGTAAACAACTTTTGGACTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTC
*
12500 TCTCTTGGTTCT--A--G-GCCTTT
192 TCTCTTGGTTCTCGATCGAACC-TT
* ** * *
12520 CAAAGTTGACAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACAAACC
1 -AAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCC
* * * *
12585 ATTCCTTCGAGCAATTTTCTGA-ACATTCCAAGCTTAGGAAATCTCATCATTTGGTCTAAATAGT
65 ATTCCTTCAAGCAATTTTCTGATACAGTCCATGCTTAGGAAATCTCATCATTAGGTCTAAATAGT
* * * *
12649 TGTCATTTTGTAAACAACTTTTGAACTTTGAATTAAAAA-ATACTTTATGTGAGAATTGTTTCTT
130 TGTCATTTTGTAAACAACTTTTGGACTTTGAATTAAAAACTTA-TTTAGGTGAGAATTGTTTCTC
*
12713 TCTTGGTTCTCGACCGAACCTT
194 TCTTGGTTCTCGATCGAACCTT
* *
12735 AAACTTGACAAACTTTTACAAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCCA
1 AAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCA
*
12800 TTCCTTCAAGCAATTTTCT-ATACAGTCCATGCTT-GGAAAATCAT-TTCATTAGGTCTAAATAG
66 TTCCTTCAAGCAATTTTCTGATACAGTCCATGCTTAGG-AAATC-TCATCATTAGGTCTAAATAG
* * * * *
12862 TTGTCATTTTGTAAACTACTTTTGG-TTTTCCAATTAAAAACTTATTTAGGTAAGAATTGTTTCC
129 TTGTCATTTTGTAAACAACTTTTGGACTTT-GAATTAAAAACTTATTTAGGTGAGAATTGTTTCT
*
12926 CT-TTCGGTTCTCGGTCGAA-CTT
193 CTCTT-GGTTCTCGATCGAACCTT
* * * * *
12948 ATGAACCTG-GAAACTTTTACGAGTTCTTTCAAAAC-TTCGATTCCTTAAAGTATTCAAGACGAT
1 A--AACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACGAT
13011 CCATTCCTT
63 CCATTCCTT
13020 TGAGTAATTT
Statistics
Matches: 601, Mismatches: 83, Indels: 53
0.82 0.11 0.07
Matches are distributed among these distances:
210 7 0.01
211 168 0.28
212 3 0.00
213 17 0.03
214 228 0.38
215 171 0.28
216 7 0.01
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (215 bp):
AAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCA
TTCCTTCAAGCAATTTTCTGATACAGTCCATGCTTAGGAAATCTCATCATTAGGTCTAAATAGTT
GTCATTTTGTAAACAACTTTTGGACTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTC
TTGGTTCTCGATCGAACCTT
Found at i:13397 original size:520 final size:516
Alignment explanation
Indices: 12522--13539 Score: 1327
Period size: 520 Copynumber: 2.0 Consensus size: 516
12512 AGGCCTTTCA
* * *
12522 AAGTTGACAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACAAACCAT
1 AAGTTAACAAACTTTTACGACTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAG---AACCAT
* * *
12587 TCCTTCGAGCAATTTTCTGAACATTCCAAGCTTAGGAAATCTCATCATTTGGTCTAAATAGTTGT
63 TCCTTCGAGCAATTTTCTGAACATTCCAAGCTCAGGAAATCGCATCATTTGGGCTAAATAGTTGT
* * * * *
12652 CATTTTGTAAACAACTTTTGAACTTTGAATTAAAAAATACTTTATGTGAGAATTGTTTCTTTCTT
128 CATTTTATAAAAAACTTTTGAACTTTGAATTAAAAAATACTTTAGGTGAGAATAGTTTCTTTCTA
* * * * *
12717 GGTTCTCGACCGAACCTTAAACTTGACAAACTTTTACAAGTTCTTTTATAACTTTTGTTCATTAA
193 GGTTCTAGACCGAACCTTAAACTTAAAAAACCTTTACAAGTTCTTTTATAACTTTGGTTCATTAA
* * **
12782 AGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCTATACAGTCCATGCTTGGAAAATCATTTC
258 AGTATTCAAGACGATCCATACCTTCAAGCAATTTTCTAAACAGTCCATGCTCAGAAAATCA-TTC
* *
12847 ATTAGGTCTAAATAGTTGTCATTTTGTAAACTACTTTTGGT-TTTCCAATTAAAAACTTATTTAG
322 ATTAGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTT-CAATTAAAAACTTATTTAA
* ** *
12911 GTAAGAATTGTTTCCCTTTC-GGTTCTCGGTCGAACTTATGAACCTG-GAAACTTTTACGAGTTC
386 GTAAGAATTGTTT--CTTTCAGGTTCTCGGCCGAACTTACAAACCTGACAAACTTTTACGAGTTC
12974 TTTCAAAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCCAAACTT
449 TTTCAAAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCCAAACTT
13039 TTG
514 TTG
*
13042 AAGTTAACAAACTTTTACGACTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAG-ACGA-TCC
1 AAGTTAACAAACTTTTACGACTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGAACCATTCC
**
13105 TTCGAGCAATTTTCTGAATGTTCCAAGCTCAGGAAATCGCATCATTTGGGCTAAATAGTTGTCAT
66 TTCGAGCAATTTTCTGAACATTCCAAGCTCAGGAAATCGCATCATTTGGGCTAAATAGTTGTCAT
** *
13170 TTTATAAAAAAAACTTTTGGTCTTTGAATTAAAAAACTTA-TTTAGGTGATAATAGTTTCTCTT-
131 TTTAT--AAAAAACTTTTGAACTTTGAATTAAAAAA--TACTTTAGGTGAGAATAGTTTCT-TTC
* * * * * *
13233 TAGGTTCTAGGCCGAACTTTCGAACTTAAAAAACCTTTACGAGTTCTTTTTTAACTTTGGTTCCT
191 TAGGTTCTAGACCGAACCTT-AAACTTAAAAAACCTTTACAAGTTCTTTTATAACTTTGGTTCAT
* * * * *
13298 TAAATTATTCAAGACGATCTATACCTTCAAGGAATTTT-TCAAACATTCCATTCTCAGAAAATTG
255 TAAAGTATTCAAGACGATCCATACCTTCAAGCAATTTTCT-AAACAGTCCATGCTCAGAAAA-T-
* *
13362 CA-TCAATT-GTTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
317 CATTC-ATTAGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTCAATTAAAAACTT
* * *
13425 ATTTAAGTAAGAATTGTTTCTTTCTAGGTTCTCGGCCGAACTTCCAAACTTGACAAACTTTTATG
380 ATTTAAGTAAGAATTGTTTCTTTC-AGGTTCTCGGCCGAACTTACAAACCTGACAAACTTTTACG
* * **
13490 AGTTCTTTTATAACTTTTATTCCTTAAAGTATTCAAGACGATCCATTCCT
444 AGTTCTTTCAAAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
13540 CCCGACCATT
Statistics
Matches: 431, Mismatches: 52, Indels: 29
0.84 0.10 0.06
Matches are distributed among these distances:
515 67 0.16
516 3 0.01
517 26 0.06
518 39 0.09
519 102 0.24
520 133 0.31
521 61 0.14
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (516 bp):
AAGTTAACAAACTTTTACGACTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGAACCATTCC
TTCGAGCAATTTTCTGAACATTCCAAGCTCAGGAAATCGCATCATTTGGGCTAAATAGTTGTCAT
TTTATAAAAAACTTTTGAACTTTGAATTAAAAAATACTTTAGGTGAGAATAGTTTCTTTCTAGGT
TCTAGACCGAACCTTAAACTTAAAAAACCTTTACAAGTTCTTTTATAACTTTGGTTCATTAAAGT
ATTCAAGACGATCCATACCTTCAAGCAATTTTCTAAACAGTCCATGCTCAGAAAATCATTCATTA
GGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTCAATTAAAAACTTATTTAAGTAAG
AATTGTTTCTTTCAGGTTCTCGGCCGAACTTACAAACCTGACAAACTTTTACGAGTTCTTTCAAA
ACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCCAAACTTTTG
Found at i:13464 original size:216 final size:215
Alignment explanation
Indices: 13034--14776 Score: 1806
Period size: 215 Copynumber: 8.1 Consensus size: 215
13024 TAATTTTCCA
* * * * * *
13034 AACTTTTGAAGTTAACAAACTTTTACGACTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGA
1 AACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
** * * **
13099 CG----A-TCCTTCGAGCAA-TTTTCTGAATGTTCCAAGCTCAGGAAATCGCATCATTTGGGCTA
66 CGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCAGGAAATCGCATCAATTGTTCTA
* * *
13158 AATAGTTGTCATTTTATAAAAAAAACTTTTGGTCTTTGAATTAAAAAACTTATTTAGGTGATAAT
130 AATAGTTGTCATTTTGT--AAACAACTTTTGGTCTTTGAATT-AAAAACTTATTTAGGTGAGAAT
* *
13223 AGTTTCTCTT-TAGGTTCTAGGCCG
192 AGTTTCT-TTCTAGGTTCTCGGTCG
* * * * * *
13247 AACTTTCGAACTTAAAAAACCTTTACGAGTTCTTTTTTAACTTTGGTTCCTTAAATTATTCAAGA
1 AACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * * * *
13312 CGATCTATACCTTCAAGGAATTTTTCAAACATTCCATTCTCAGAAAATTGCATCAATTGTTCTAA
66 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCAATTGTTCTAA
* * *
13377 ATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAAGTAAGAATTGT
131 ATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAGT
*
13442 TTCTTTCTAGGTTCTCGGCCG
195 TTCTTTCTAGGTTCTCGGTCG
* * * ***
13463 AACTTCCAAACTTGACAAACTTTTATGAGTTCTTTTATAACTTTTATTCCTTAAAGTATTCAAGA
1 AACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * * * *
13528 CGATCCATTCCTCCCGA-CCATTTTTCGAACAATACATACTCTGGAAATCGTATCATTTGGTTC-
66 CGATCCATTCCT-TCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCAATT-GTTCT
* * *
13591 AAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTGTTTAGGTGATAATAG
129 AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAG
* *
13656 TTCCTTTCTAGGTTCTC-GACAG
194 TTTCTTTCTAGGTTCTCGGTC-G
* * * * * *
13678 AACTTTTGAACTTGACAAACATTTAAGAGTTCTTTGT-TGACTTCGATTTCTTAAAGTATTCAAG
1 AACTTTCGAACTTGACAAACTTTTACGAGTTCTTT-TATAACTTCGGTTCCTTAAAGTATTCAAG
* * * * * * ** *
13742 ATGACCCATTCTTTCGCA-CAATTTTCCAAACATTCCATGCT-TGAGAAATCATATCATTTGTTC
65 ACGATCCATTCCTTCG-AGCAATTTTTCGAACATTCCATGCTCAG-GAAATCGCATCAATTGTTC
* * * * *
13805 TAAACATA-TTGGCATTTTGTAAACAACTTTTGGTCTTTAAATTTAAAAGTTATTTATGTGAGAA
128 T-AA-ATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAA
*
13869 TTGTTTCTTTC-ATGGTTCTCGGTCG
191 TAGTTTCTTTCTA-GGTTCTCGGTCG
* * *** *
13894 AAC-TTCTGAACTTGACAAACTATTACGAGTTGTTTTATAACTTTTATTCCTTAAAGTATTCAAT
1 AACTTTC-GAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG
* * * * * ** * *
13958 ACAATCCATTCCTTTGAGCCATTTTCCGAACAGTCCATGCTTGGGAAATCACATC-ATTTTGTCT
65 ACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCAATTGT-TCT
* * * *
14022 AAATAGTTGCCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGTGAATTG
129 AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAG
* * *
14087 TTTCTTTCTTGGTTCTTGATCG
194 TTTCTTTCTAGGTTCTCGGTCG
* *
14109 AACTTTCGAACTTGACAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGA
1 AACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * *
14174 CGATCCATTCCTTCAAGAAATTTTTTGAACATTCCATGCTC-GAGAAATTGCATCATTTGGTCTA
66 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAG-GAAATCGCATCAATTGTTCTA
*
14238 AATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAAT
130 AATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAGT
* *
14303 TTCTCTCTTGGTTCAT-GGTCG
195 TTCTTTCTAGGTTC-TCGGTCG
* * * * *
14324 AACTTTCGAAGTTGACAAACTTTTATGAGTT-TTTTATAACATCGGTTCCATAAATTATTCAAGA
1 AACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* *
14388 CGATCCATTCCTTCGAGCAA-TTTTCTGAACATTCCATGCTTAGGAAATCGCATC-ATCTGGTCT
66 CGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCAGGAAATCGCATCAAT-TGTTCT
* * * *
14451 AAATAGTTGTCATTTTATAAACAACATTCGGTCTTTGAATTAAAAACTTATTTAGGTGATAATAG
129 AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAG
* *
14516 TTTCTCTCTTGGTTCTCGGTCG
194 TTTCTTTCTAGGTTCTCGGTCG
* * * * *
14538 AACTTTCGAAGTTGATAGACTTTTAGGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGA
1 AACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * * * *
14603 CGACCCATTCTTTTGTGCAATTTTTTGAACATTCAATG-TCCGGGAAATTGCATCAATTGTTCTA
66 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT-CAGGAAATCGCATCAATTGTTCTA
* * * * * *** * *
14667 AACAGATTGTCATTTTGTAAAAAACTTATGTTCTTTAAATTAAATTGTTATTTATGTGAGAATTG
130 AATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAG
*
14732 TTT-TTTCTTGGTTCTCGGTCG
194 TTTCTTTCTAGGTTCTCGGTCG
14753 AACTTTCGAACTTGACAAACTTTT
1 AACTTTCGAACTTGACAAACTTTT
14777 GTTCCATAAA
Statistics
Matches: 1283, Mismatches: 208, Indels: 76
0.82 0.13 0.05
Matches are distributed among these distances:
213 63 0.05
214 200 0.16
215 566 0.44
216 361 0.28
217 35 0.03
218 42 0.03
219 16 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
AACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCAATTGTTCTAA
ATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAGTT
TCTTTCTAGGTTCTCGGTCG
Found at i:14007 original size:431 final size:429
Alignment explanation
Indices: 13034--16199 Score: 3205
Period size: 431 Copynumber: 7.4 Consensus size: 429
13024 TAATTTTCCA
* * * * *
13034 AACTTTTGAAGTTAACAAACTTTTACGACTTCTTTTATAACTTC-AGTTCCTGAAAGTATTCAAG
1 AACTTCTGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAG
** * ** *
13098 ACG----A-TCCTTCGAGCAA-TTTTCTGAATGTTCCAAGCTCAGGAAATCGCATCATTTGGGCT
65 ACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTTGGGAAATCGCATCATTTGGTCT
*
13157 AAATAGTTGTCATTTTATAAAAAAAACTTTTGGTCTTTGAATTAAAAAACTTATTTAGGTGATAA
129 AAATAGTTGTCATTTTAT--AAACAACTTTTGGTCTTTGAATT-AAAAACTTATTTAGGTGATAA
* * * * * * * *
13222 TAGTTTCTCTT-TAGGTTCTAGGCCGAACTTTCGAACTTAAAAAACCTTTACGAGTTCTTTTTTA
191 TAGTTTCT-TTCTTGGTTCTCGACAGAACTTTCGAACTTGACAAACTTTTAAGAGTTC-TTTTTA
* * * * * * * *
13286 ACTTTGGTTCCTTAAATTATTCAAGACGATCTATACCTTCAAGGAATTTTTCAAACATTCCATTC
254 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTTCAAACATTCCATGC
** * * * *
13351 TCAGAAAATTGCATCAATTGTTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
319 TTGGGAAATCGCATCATTTGTTCTAAA-ATATTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * *
13416 TAAAAACTTATTTAAGTAAGAATTGTTTCTTTCTAGGTTCTCGGCCG
383 TAAAAACTTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCG
** * **
13463 AACTTCCAAACTTGACAAACTTTTATGAGTTCTTTTATAACTTTTATTCCTTAAAGTATTCAAGA
1 AACTTCTGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
* * * * * *
13528 CGATCCATTCCTCCCGA-CCATTTTTCGAACAATACATACTCT-GGAAATCGTATCATTTGGT-T
66 CGATCCATTCCT-TCGAGCAATTTTTCGAACATTCCATGCT-TGGGAAATCGCATCATTTGGTCT
*
13590 CAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTGTTTAGGTGATAATA
129 -AAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGATAATA
* * * * *
13655 GTTCCTTTCTAGGTTCTCGACAGAACTTTTGAACTTGACAAACATTTAAGAGTTCTTTGTTGACT
193 GTTTCTTTCTTGGTTCTCGACAGAACTTTCGAACTTGACAAACTTTTAAGAGTTCTTT-TTAACT
* * * * *
13720 TCGATTTCTTAAAGTATTCAAGATGACCCATTCTTTCGCA-CAATTTTCCAAACATTCCATGCTT
257 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCG-AGCAATTTTTCAAACATTCCATGCTT
* ** * * *
13784 GAGAAATCATATCATTTGTTCTAAACATATTGGCATTTTGTAAACAACTTTTGGTCTTTAAATTT
321 GGGAAATCGCATCATTTGTTCTAAA-ATATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* *
13849 AAAAGTTATTTATGTGAGAATTGTTTCTTTCATGGTTCTCGGTCG
385 AAAACTTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCG
* * ** *
13894 AACTTCTGAACTTGACAAACTATTACGAGTTGTTTTATAACTTTTATTCCTTAAAGTATTCAATA
1 AACTTCTGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
* * * * * * *
13959 CAATCCATTCCTTTGAGCCATTTTCCGAACAGTCCATGCTTGGGAAATCACATCATTTTGTCTAA
66 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAA
* * * *
14024 ATAGTTGCCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTG-TGAATTGT
131 ATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAT-AATAGT
*
14088 TTCTTTCTTGGTTCTTGATC-GAACTTTCGAACTTGACAAACTTTTACA-AGTTCTTTTATAACT
195 TTCTTTCTTGGTTCTCGA-CAGAACTTTCGAACTTGACAAACTTTTA-AGAGTTCTTTT-TAACT
* * * * ** *
14151 TCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGAAATTTTTTGAACATTCCATGCTCG
257 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTTCAAACATTCCATGCTTG
* * *
14216 AGAAATTGCATCATTTGGTCT-AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
322 GGAAATCGCATCATTTGTTCTAAAATA-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* ** *
14280 AAACTTATTTAGGTGAGAATAATTTCTCTCTTGGTTCAT-GGTCG
386 AAACTTATTTATGTGAGAATTGTTTCTTTCTTGGTTC-TCGGTCG
* * * * * *
14324 AACTT-TCGAAGTTGACAAACTTTTATGAGTT-TTTTATAACATCGGTTCCATAAATTATTCAAG
1 AACTTCT-GAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAG
* *
14387 ACGATCCATTCCTTCGAGCAA-TTTTCTGAACATTCCATGCTTAGGAAATCGCATCATCTGGTCT
65 ACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTTGGGAAATCGCATCATTTGGTCT
* *
14451 AAATAGTTGTCATTTTATAAACAACATTCGGTCTTTGAATTAAAAACTTATTTAGGTGATAATAG
129 AAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGATAATAG
* * * * * *
14516 TTTCTCTCTTGGTTCTCGGTC-GAACTTTCGAAGTTGATAGACTTTTAGGAGTTCTTTTTTAACT
194 TTTCTTTCTTGGTTCTC-GACAGAACTTTCGAACTTGACAAACTTTTAAGAGTTC-TTTTTAACT
* * * ** * *
14580 TCGGTTCCTTAAAGTATTCAAGACGACCCATTCTTTTGTGCAATTTTTTGAACATTCAATG-TCC
257 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTTCAAACATTCCATGCT-T
* * * * * * *
14644 GGGAAATTGCATCAATTGTTCTAAACAGATTGTCATTTTGTAAAAAACTTATGTTCTTTAAATTA
321 GGGAAATCGCATCATTTGTTCTAAA-ATATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
***
14709 AATTGTTATTTATGTGAGAATTGTTT-TTTCTTGGTTCTCGGTCG
385 AAAACTTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCG
14753 AACTT-TCGAACTTGACAAACTTTT----G------T-T--C--C-A-----TAAAGTATTCAAG
1 AACTTCT-GAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAG
* * *
14796 ACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTTGGGAAATCGAATCATTTGATCTA
65 ACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTA
* * * * * * *
14861 AATATTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAATTATTTATGTGAGAATTGC
130 AATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGATAATAGT
* * * * ** * *
14926 TTCTTTCTTGGTTCTCGGCCGAA-ATTCGAACTTGAGAAACTTTTACTAGCTCTTTTATAACTTT
195 TTCTTTCTTGGTTCTCGACAGAACTTTCGAACTTGACAAACTTTTAAGAGTTCTTTT-TAACTTC
* * * * * * *
14990 TGTTCCTTAAAGTATTCAAGGCAATCCATT-TCTTCGAGTAA-TTTTCAGAATAGTCCATGCTCG
259 GGTTCCTTAAAGTATTCAAGACGATCCATTCT-TTCGAGCAATTTTTCA-AACATTCCATGCTTG
* * * *
15053 GGAAATCACATCATTTGGTCT-AAATAGTTGTCATTTTATAAA-ATACTTTTCGTCTTTGAATTA
322 GGAAATCGCATCATTTGTTCTAAAATA-TTGTCATTTTGTAAACA-ACTTTTGGTCTTTGAATTA
* * ** *
15116 AAAACTTATTTA-GCTGAGAATAGTTTCTCTCTTGGTTCTTAGTTG
385 AAAACTTATTTATG-TGAGAATTGTTTCTTTCTTGGTTCTCGGTCG
* * * * * * * * * *
15161 AACTTCCGAATTTGACAAAGTTTTACAAGCTCTTCTATAACATCGGTTCATTAAAGTATTTAAGA
1 AACTTCTGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
* * * * *
15226 GGATCCATTCCTTC-A-CATAATTTTTCGAACATTCCATACTTAGGAAATTGCATCATATGGTCT
66 CGATCCATTCCTTCGAGC--AATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCT
* * *
15289 AAATAGTTGTCATTTTATAAACAACTTTTGGTCTTCGAATTAAAAACATATTTAAGTGATAATAG
129 AAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGATAATAG
* * * * * * * *
15354 TTCCTCTCTTGGATCTTAGCCA-AACTTTCGAAGTTAACAAACTTTTACGAGTTCTTTTTTAACT
194 TTTCTTTCTTGGTTC-TCGACAGAACTTTCGAACTTGACAAACTTTTAAGAGTTC-TTTTTAACT
* * * *
15418 TGGGTTCCATAAAGTATTCAACACGATCCATTCCTTT-GAGCAATTTTTCAAACATTCTATGCTT
257 TCGGTTCCTTAAAGTATTCAAGACGATCCATT-CTTTCGAGCAATTTTTCAAACATTCCATGCTT
* * * * *
15482 GGGAAATCACATAAATTGTTCCAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAA-TA
321 GGGAAATCGCATCATTTGTTCTAAA-ATATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * *
15546 AAAATGTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTCGGTCA
385 AAAA-CTTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCG
* *
15592 AACTTCTGAACTTGACAAACTTTTACGAGTTCTTTTAAAACTTTTG-TTCCTTAAAGTATTCAAG
1 AACTTCTGAACTTGACAAACTTTTACGAGTTCTTTTATAAC-TTCGATTCCTTAAAGTATTCAAG
* * * *
15656 ACGATCCATTCCTTCGTGCAGTTTTTTGAACATTCCATGCTTGGGAAATTGCATCATTTGGTCTA
65 ACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTA
* * * * * * **
15721 AGTAGTTGTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAA-ATACTTTATGTGAGAATTC
130 AATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTA-TTTAGGTGATAATAG
* * *
15785 TTTCTTCCTTGGTTCTCGACCA-AACTTT-AAACTTGACAAACTTTTACA-AGTTCTTTTATAAT
194 TTTCTTTCTTGGTTCTCGA-CAGAACTTTCGAACTTGACAAACTTTTA-AGAGTTCTTTT-TAAC
** * * ** *
15847 TTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGTACAGTCCATGCTT
256 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTTCAAACATTCCATGCTT
* ** *
15912 GGGAAATCGCATCATTAGGACT-AAATAGTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTA
321 GGGAAATCGCATCATTTGTTCTAAAATA-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * *
15976 AATACTTATTTAGGTGAGAATTATTTCTTTCTTTGTTCTC-G--G
385 AAAACTTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCG
*** *
16018 --C--C-GAACTTGGGTAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTAATCAAGA
1 AACTTCTGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
* * *
16078 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAA
66 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAA
* * * *
16143 ATAGTTGTTATTTTGTAAACAACTTTTGGTCTTTGAATTTAAAACTAATTTAGGTGA
131 ATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGA
16200 GAATTGAAAA
Statistics
Matches: 2280, Mismatches: 367, Indels: 188
0.80 0.13 0.07
Matches are distributed among these distances:
406 4 0.00
407 60 0.03
408 123 0.05
409 142 0.06
410 4 0.00
412 1 0.00
415 1 0.00
417 1 0.00
418 1 0.00
419 2 0.00
420 4 0.00
421 157 0.07
422 2 0.00
423 1 0.00
424 1 0.00
425 1 0.00
427 1 0.00
428 10 0.00
429 558 0.24
430 365 0.16
431 748 0.33
432 33 0.01
433 3 0.00
434 49 0.02
435 8 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (429 bp):
AACTTCTGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAA
ATAGTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGATAATAGTT
TCTTTCTTGGTTCTCGACAGAACTTTCGAACTTGACAAACTTTTAAGAGTTCTTTTTAACTTCGG
TTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTTCAAACATTCCATGCTTGGGAA
ATCGCATCATTTGTTCTAAAATATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
TATTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCG
Found at i:14706 original size:860 final size:856
Alignment explanation
Indices: 13034--16199 Score: 3659
Period size: 860 Copynumber: 3.7 Consensus size: 856
13024 TAATTTTCCA
* * * * * ** *
13034 AACTTTTGAAGTTAACAAACTTTTACGACTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGA
1 AACTTCTGAACTTGACAAAC-TTTACGAGTTGTTTTA-AACTT-TTTTCCTTAAAGTATTCAAGA
* * ** * ** * *
13099 CG----A-TCCTTCGAGCAATTTTCTGAATGTTCCAAGCTCAGGAAATCGCATCATTTGGGCTAA
63 CGATCCATTCCTTCGAGCCATTTTCCGAACATTCCATGCTTGGGAAATCACATCATTTGGTCTAA
* * * *
13159 ATAGTTGTCATTTTATAAAAAAAACTTTTGGTCTTTGAATTAAAAAACTTATTTAGGTGATAATA
128 ATAGTTGTCATTTTGT--AAACAACTTTTGGTCTTTGAATT-AAAAACTTATTTAGGTGAGAATT
* * * * * * * *
13224 GTTTCTCTT-TAGGTTCTAGGCCGAACTTTCGAACTTAAAAAACCTTTACGAGTTCTTTTTTAAC
190 GTTTCT-TTCTTGGTTCTCGACCGAACTTTCGAACTTGACAAACTTTTACAAGTTCTTTTATAAC
* * * * * * *
13288 TTTGGTTCCTTAAATTATTCAAGACGATCTATACCTTCAAGGAATTTTTCAAACATTCCATTCTC
254 TTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGAAATTTTTCGAACAGTCCATGCTC
* * *
13353 -AGAAAATTGCATCAATTGTTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
319 GAG-AAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * ** * * * *
13417 AAAAACTTATTTAAGTAAGAATTGTTTCTTTCTAGGTTCTCGGCCGAACTTCCAAACTTGACAAA
382 AAAAACTTATTTAGGTGAGAATAATTTCTCTCTTGGTTCTCGGCCGAACTTCCGAAGTTGACAAA
* * ** * *
13482 CTTTTATGAGTTCTTTTATAACTTTTATTCCTTAAAGTATTCAAGACGATCCATTCCTCCCGA-C
447 CTTTTACGAGTTCTTTTATAACATCGATTCCATAAAGTATTCAAGACGATCCATTCCT-TCGAGC
* * * *
13546 CATTTTTCGAACAATACATACTCT-GGAAATCGTATCATTTGGT-TCAAATAGTTGTCATTTTAT
511 AATTTTTCGAACATTCCATACT-TAGGAAATCGCATCATTTGGTCT-AAATAGTTGTCATTTTAT
* * *
13609 AAACAACTTTTGGTCTTTGAATTAAAAACTTGTTTAGGTGATAATAGTTCCTTTCTAGGTTCTCG
574 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGATAATAGTTCCTCTCTTGGTTCTCG
* * * * * * *
13674 ACAGAACTTTTGAACTTGACAAACATTTAAGAGTTCTTTGTTGACTTCGATTTCTTAAAGTATTC
639 AC-GAACTTTCGAAGTTGACAAACTTTTAAGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTC
* * * * * * *
13739 AAGATGACCCATTCTTTCGCA-CAATTTTCCAAACATTCCATGCTTGAGAAATCATATCATTTGT
703 AAGACGACCCATTCTTTTG-AGCAATTTTTCAAACATTCAATGCTTGGGAAATCACATCAATTGT
* *
13803 TCTAAACATATTGGCATTTTGTAAACAACTTTTGGTCTTTAAATTTAAAAGTTATTTATGTGAGA
767 TCTAAACAGATTGTCATTTTGTAAACAACTTTTGGTCTTTAAA-TTAAAAGTTATTTATGTGAGA
*
13868 ATTGTTTCTTTCATGGTTCTCGGTCG
831 ATTGTTTCTTTCTTGGTTCTCGGTCG
*
13894 AACTTCTGAACTTGACAAACTATTACGAGTTGTTTTATAACTTTTATTCCTTAAAGTATTCAATA
1 AACTTCTGAACTTGACAAACT-TTACGAGTTGTTTTA-AACTTTT-TTCCTTAAAGTATTCAAGA
* * * *
13959 CAATCCATTCCTTTGAGCCATTTTCCGAACAGTCCATGCTTGGGAAATCACATCATTTTGTCTAA
63 CGATCCATTCCTTCGAGCCATTTTCCGAACATTCCATGCTTGGGAAATCACATCATTTGGTCTAA
* * *
14024 ATAGTTGCCATTTTGTAAACTACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGTGAATTGTT
128 ATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTT
* * *
14089 TCTTTCTTGGTTCTTGATCGAACTTTCGAACTTGACAAACTTTTACAAGTTCTTTTATAACTTCG
193 TCTTTCTTGGTTCTCGACCGAACTTTCGAACTTGACAAACTTTTACAAGTTCTTTTATAACTTTG
* * *
14154 GTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGAAATTTTTTGAACATTCCATGCTCGAGA
258 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGAAATTTTTCGAACAGTCCATGCTCGAGA
*
14219 AATTGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
323 AATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* *
14284 TTATTTAGGTGAGAATAATTTCTCTCTTGGTTCAT-GGTCGAACTTTCGAAGTTGACAAACTTTT
388 TTATTTAGGTGAGAATAATTTCTCTCTTGGTTC-TCGGCCGAACTTCCGAAGTTGACAAACTTTT
* * *
14348 ATGAGTT-TTTTATAACATCGGTTCCATAAATTATTCAAGACGATCCATTCCTTCGAGCAA-TTT
452 ACGAGTTCTTTTATAACATCGATTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* *
14411 TCTGAACATTCCATGCTTAGGAAATCGCATCATCTGGTCTAAATAGTTGTCATTTTATAAACAAC
517 TC-GAACATTCCATACTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTATAAACAAC
* * * *
14476 ATTCGGTCTTTGAATTAAAAACTTATTTAGGTGATAATAGTTTCTCTCTTGGTTCTCGGTCGAAC
581 TTTTGGTCTTTGAATTAAAAACTTATTTAGGTGATAATAGTTCCTCTCTTGGTTCTC-GACGAAC
* * *
14541 TTTCGAAGTTGATAGACTTTTAGGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGA
645 TTTCGAAGTTGACAAACTTTTAAGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGA
* ** * **
14606 CCCATTCTTTTGTGCAATTTTTTGAACATTCAATG-TCCGGGAAATTGCATCAATTGTTCTAAAC
710 CCCATTCTTTTGAGCAATTTTTCAAACATTCAATGCT-TGGGAAATCACATCAATTGTTCTAAAC
* * * *
14670 AGATTGTCATTTTGTAAAAAACTTATGTTCTTTAAATTAAATTGTTATTTATGTGAGAATTGTTT
774 AGATTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAA-AGTTATTTATGTGAGAATTGTTT
14735 -TTTCTTGGTTCTCGGTCG
838 CTTTCTTGGTTCTCGGTCG
*
14753 AACTT-TCGAACTTGACAAAC-TT-----TTG------------TTCCATAAAGTATTCAAGACG
1 AACTTCT-GAACTTGACAAACTTTACGAGTTGTTTTAAACTTTTTTCCTTAAAGTATTCAAGACG
* *
14799 ATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTTGGGAAATCGA-ATCATTTGATCTAAA
65 ATCCATTCCTTCGAGCCATTTTCCGAACATTCCATGCTTGGGAAATC-ACATCATTTGGTCTAAA
* * * *
14863 TATTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAATTATTTATGTGAGAATTGCTT
129 TAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTT
* * * * * *
14928 CTTTCTTGGTTCTCGGCCGAA-ATTCGAACTTGAGAAACTTTTACTAGCTCTTTTATAACTTTTG
194 CTTTCTTGGTTCTCGACCGAACTTTCGAACTTGACAAACTTTTACAAGTTCTTTTATAACTTTGG
* * * * * * *
14992 TTCCTTAAAGTATTCAAGGCAATCCATTTCTTCGAGTAA-TTTTCAGAATAGTCCATGCTCGGGA
259 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGAAATTTTTC-GAACAGTCCATGCTCGAGA
* * *
15056 AATCACATCATTTGGTCTAAATAGTTGTCATTTTATAAA-ATACTTTTCGTCTTTGAATTAAAAA
323 AATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACA-ACTTTTGGTCTTTGAATTAAAAA
* * ** ** * *
15120 CTTATTTAGCTGAGAATAGTTTCTCTCTTGGTTCTTAGTTGAACTTCCGAATTTGACAAAGTTTT
387 CTTATTTAGGTGAGAATAATTTCTCTCTTGGTTCTCGGCCGAACTTCCGAAGTTGACAAACTTTT
* * * * * *
15185 ACAAGCTCTTCTATAACATCGGTT-CATTAAAGTATTTAAGAGGATCCATTCCTTC-A-CATAAT
452 ACGAGTTCTTTTATAACATCGATTCCA-TAAAGTATTCAAGACGATCCATTCCTTCGAGC--AAT
* *
15247 TTTTCGAACATTCCATACTTAGGAAATTGCATCATATGGTCTAAATAGTTGTCATTTTATAAACA
514 TTTTCGAACATTCCATACTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTATAAACA
* * * * * * *
15312 ACTTTTGGTCTTCGAATTAAAAACATATTTAAGTGATAATAGTTCCTCTCTTGGATCTTAGCCAA
579 ACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGATAATAGTTCCTCTCTTGGTTC-TCGACGA
* * * * *
15377 ACTTTCGAAGTTAACAAACTTTTACGAGTTCTTTTTTAACTTGGGTTCCATAAAGTATTCAACAC
643 ACTTTCGAAGTTGACAAACTTTTAAGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGAC
* * * * *
15442 GATCCATTCCTTTGAGCAATTTTTCAAACATTCTATGCTTGGGAAATCACATAAATTGTTCCAAA
708 GACCCATTCTTTTGAGCAATTTTTCAAACATTCAATGCTTGGGAAATCACATCAATTGTTCTAAA
* * *
15507 TAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATAAAAATGTTATTTATGTGAGAATTGTT
773 CAGATTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAA-GTTATTTATGTGAGAATTGTT
* *
15572 TCTCTCTTGGTTCTCGGTCA
837 TCTTTCTTGGTTCTCGGTCG
*
15592 AACTTCTGAACTTGACAAACTTTTACGAGTTCTTTTAAAACTTTTGTTCCTTAAAGTATTCAAGA
1 AACTTCTGAACTTGACAAAC-TTTACGAGTTGTTTT-AAACTTTT-TTCCTTAAAGTATTCAAGA
* ** **
15657 CGATCCATTCCTTCGTG-CAGTTTTTTGAACATTCCATGCTTGGGAAATTGCATCATTTGGTCTA
63 CGATCCATTCCTTCGAGCCA-TTTTCCGAACATTCCATGCTTGGGAAATCACATCATTTGGTCTA
* * * * *
15721 AGTAGTTGTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAA-ATACTTTATGTGAGAATTC
127 AATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA-TTTAGGTGAGAATTG
* * * *
15785 TTTCTTCCTTGGTTCTCGACCAAACTTT-AAACTTGACAAACTTTTACAAGTTCTTTTATAATTT
191 TTTCTTTCTTGGTTCTCGACCGAACTTTCGAACTTGACAAACTTTTACAAGTTCTTTTATAACTT
* * * * * * *
15849 TTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGTACAGTCCATGCTTGG
256 TGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGAAATTTTTCGAACAGTCCATGCTCGA
* * * *
15914 GAAATCGCATCATTAGGACTAAATAGTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAT
321 GAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * *
15979 ACTTATTTAGGTGAGAATTATTTCTTTCTTTGTTCTCGGCCGAACTT--G--G--G--TAACTTT
386 ACTTATTTAGGTGAGAATAATTTCTCTCTTGGTTCTCGGCCGAACTTCCGAAGTTGACAAACTTT
* * *
16036 TACGAGTTCTTTTATAACTTCGATTCCTTAAAGTAATCAAGACGATCCATTCCTTCGAGCAATTT
451 TACGAGTTCTTTTATAACATCGATTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * * * *
16101 TTCGAACATTCCATGC-TCGAGAAATTGCATCATTTGGTCTAAATAGTTGTTATTTTGTAAACAA
516 TTCGAACATTCCATACTTAG-GAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTATAAACAA
* *
16165 CTTTTGGTCTTTGAATTTAAAACTAATTTAGGTGA
580 CTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGA
16200 GAATTGAAAA
Statistics
Matches: 1971, Mismatches: 271, Indels: 136
0.83 0.11 0.06
Matches are distributed among these distances:
836 7 0.00
837 207 0.11
838 471 0.24
839 42 0.02
840 1 0.00
841 2 0.00
846 2 0.00
851 2 0.00
852 144 0.07
853 2 0.00
854 2 0.00
857 2 0.00
858 2 0.00
859 54 0.03
860 683 0.35
861 113 0.06
862 152 0.08
863 23 0.01
864 1 0.00
865 59 0.03
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (856 bp):
AACTTCTGAACTTGACAAACTTTACGAGTTGTTTTAAACTTTTTTCCTTAAAGTATTCAAGACGA
TCCATTCCTTCGAGCCATTTTCCGAACATTCCATGCTTGGGAAATCACATCATTTGGTCTAAATA
GTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGAGAATTGTTTCT
TTCTTGGTTCTCGACCGAACTTTCGAACTTGACAAACTTTTACAAGTTCTTTTATAACTTTGGTT
CCTTAAAGTATTCAAGACGATCCATTCCTTCAAGAAATTTTTCGAACAGTCCATGCTCGAGAAAT
CGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
TTTAGGTGAGAATAATTTCTCTCTTGGTTCTCGGCCGAACTTCCGAAGTTGACAAACTTTTACGA
GTTCTTTTATAACATCGATTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
ACATTCCATACTTAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTATAAACAACTTTTG
GTCTTTGAATTAAAAACTTATTTAGGTGATAATAGTTCCTCTCTTGGTTCTCGACGAACTTTCGA
AGTTGACAAACTTTTAAGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGACCCATT
CTTTTGAGCAATTTTTCAAACATTCAATGCTTGGGAAATCACATCAATTGTTCTAAACAGATTGT
CATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAGTTATTTATGTGAGAATTGTTTCTTTCTTG
GTTCTCGGTCG
Found at i:14924 original size:193 final size:194
Alignment explanation
Indices: 14583--14969 Score: 501
Period size: 194 Copynumber: 2.0 Consensus size: 194
14573 TTTAACTTCG
* * * * **
14583 GTTCCTTAAAGTATTCAAGACGACCCATTCTTTTGTGCAATTTTTTGAACATTCAATGTCCGGGA
1 GTTCCATAAAGTATTCAAGACGACCCATTCCTTCGAGCAATTTTCCGAACATTCAATGTCCGGGA
* * * * **
14648 AATTGCATCAATTGTTCTAAACAGATTGTCATTTTGTAAAAAACTTATGTTCTTTAAATTAAATT
66 AATCGAATCAATTGATCTAAACAGATTGTCATTTTGTAAAAAACTTATGGTCTTTAAATTAAAAA
* * * *
14713 GTTATTTATGTGAGAATTG-TTTTTTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAAACTTTT
131 ATTATTTATGTGAGAATTGCTTCTTTCTTGGTTCTCGGCCGAA-ATTCGAACTTGACAAACTTTT
* * *
14777 GTTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATG-CTTGGG
1 GTTCCATAAAGTATTCAAGACGACCCATTCCTTCGAGCAATTTTCCGAACATTCAATGTC-CGGG
* * * * * *
14841 AAATCGAATCATTTGATCTAAATA-TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
65 AAATCGAATCAATTGATCTAAACAGATTGTCATTTTGTAAAAAACTTATGGTCTTTAAATTAAAA
*
14905 AATTATTTATGTGAGAATTGCTTCTTTCTTGGTTCTCGGCCGAAATTCGAACTTGAGAAACTTTT
130 AATTATTTATGTGAGAATTGCTTCTTTCTTGGTTCTCGGCCGAAATTCGAACTTGACAAACTTTT
14970 ACTAGCTCTT
Statistics
Matches: 165, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
193 72 0.44
194 93 0.56
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.40
Consensus pattern (194 bp):
GTTCCATAAAGTATTCAAGACGACCCATTCCTTCGAGCAATTTTCCGAACATTCAATGTCCGGGA
AATCGAATCAATTGATCTAAACAGATTGTCATTTTGTAAAAAACTTATGGTCTTTAAATTAAAAA
ATTATTTATGTGAGAATTGCTTCTTTCTTGGTTCTCGGCCGAAATTCGAACTTGACAAACTTTT
Found at i:15355 original size:215 final size:215
Alignment explanation
Indices: 14770--16203 Score: 1550
Period size: 215 Copynumber: 6.7 Consensus size: 215
14760 GAACTTGACA
* *
14770 AACTTTTGTTCCA-TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCAT
1 AACTTTGGTT-CATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCAT
* * *
14834 GCTTGGGAAATCGAATCATTTGATCTAAATATTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
65 GCTTGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * * **
14899 TTAAAAA-ATTATTTATGTGAGAATTGCTTCTTTCTTGGTTCTCGGCCGAAA-TT-CGAACTTGA
130 TTAAAAACA-TATTTATGTGAGAATAGTTTCTCTCTTGGTTCTTAGCC-AAACTTCCGAACTTGA
* * *
14961 GAAACTTTTACTAGCTCTTTTAT
193 CAAACTTTTACGAGTTCTTTTAT
* * * * * * * *
14984 AACTTTTGTTCCTTAAAGTATTCAAGGCAATCCATTTCTTCGAGTAA-TTTTCAGAATAGTCCAT
1 AACTTTGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCAT
* * * *
15048 GCTCGGGAAATCACATCATTTGGTCTAAATAGTTGTCATTTTATAAA-ATACTTTTCGTCTTTGA
65 GCTTGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACA-ACTTTTGGTCTTTGA
* *** *
15112 ATTAAAAACTTATTTA-GCTGAGAATAGTTTCTCTCTTGGTTCTTAGTTGAACTTCCGAATTTGA
129 ATTAAAAACATATTTATG-TGAGAATAGTTTCTCTCTTGGTTCTTAGCCAAACTTCCGAACTTGA
* * * *
15176 CAAAGTTTTACAAGCTCTTCTAT
193 CAAACTTTTACGAGTTCTTTTAT
* * * *
15199 AACATCGGTTCATTAAAGTATTTAAGAGGATCCATTCCTTC-A-CATAATTTTTCGAACATTCCA
1 AACTTTGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGC--AATTTTTCGAACATTCCA
* * * * * *
15262 TACTTAGGAAATTGCATCATATGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTCGA
64 TGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
* * * * * * *
15327 ATTAAAAACATATTTAAGTGATAATAGTTCCTCTCTTGGATCTTAGCCAAACTTTCGAAGTTAAC
129 ATTAAAAACATATTTATGTGAGAATAGTTTCTCTCTTGGTTCTTAGCCAAACTTCCGAACTTGAC
*
15392 AAACTTTTACGAGTTCTTTTTT
194 AAACTTTTACGAGTTCTTTTAT
* * * * *
15414 AACTTGGGTTCCA-TAAAGTATTCAACACGATCCATTCCTTTGAGCAATTTTTCAAACATTCTAT
1 AACTTTGGTT-CATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCAT
* * * * *
15478 GCTTGGGAAATCACATAAATTGTTCCAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGA
65 GCTTGGGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTCTTTGA
** * ** * *
15543 A-TAAAAATGTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTCGGTCAAACTTCTGAACTTGA
129 ATTAAAAA-CATATTTATGTGAGAATAGTTTCTCTCTTGGTTCTTAGCCAAACTTCCGAACTTGA
*
15607 CAAACTTTTACGAGTTCTTTTAA
193 CAAACTTTTACGAGTTCTTTTAT
* * * * *
15630 AACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGTGCAGTTTTTTGAACATTCCATG
1 AACTTTGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
* * *
15695 CTTGGGAAATTGCATCATTTGGTCTAAGTAGTTGTCATTTTGTAAACAACTTTTGGTATTTGAAT
66 CTTGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
** * **
15760 TAAAAA-ATACTTTATGTGAGAATTCTTTCT-TCCTTGGTTC-TCGACCAAACTT-TAAACTTGA
131 TAAAAACATA-TTTATGTGAGAATAGTTTCTCT-CTTGGTTCTTAG-CCAAACTTCCGAACTTGA
*
15821 CAAACTTTTACAAGTTCTTTTAT
193 CAAACTTTTACGAGTTCTTTTAT
* * * *
15844 AATTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGTACAGTCCATG
1 AACTTTGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
* * *
15909 CTTGGGAAATCGCATCATTAGGACTAAATAGTTGTCATTTTGTAAACAACTTTTGGTTTTTGAAT
66 CTTGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * ** ***
15974 TAAATACTTATTTAGGTGAGAATTA-TTTCTTTCTTTGTTC-T-------CGGCCGAACTTGGGT
131 TAAAAACATATTTATGTGAGAA-TAGTTTCTCTCTTGGTTCTTAGCCAAACTTCCGAACTTGACA
16030 AACTTTTACGAGTTCTTTTAT
195 AACTTTTACGAGTTCTTTTAT
* * * *
16051 AACTTCGATTCCTTAAAGTAATCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
1 AACTTTGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
* * * *
16116 CTCGAGAAATTGCATCATTTGGTCTAAATAGTTGTTATTTTGTAAACAACTTTTGGTCTTTGAAT
66 CTTGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* *
16181 TTAAAAC-TAATTTAGGTGAGAAT
131 TAAAAACAT-ATTTATGTGAGAAT
16204 TGAAAACAAG
Statistics
Matches: 1026, Mismatches: 167, Indels: 62
0.82 0.13 0.05
Matches are distributed among these distances:
206 3 0.00
207 159 0.15
213 9 0.01
214 324 0.32
215 343 0.33
216 187 0.18
217 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
AACTTTGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
CTTGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
TAAAAACATATTTATGTGAGAATAGTTTCTCTCTTGGTTCTTAGCCAAACTTCCGAACTTGACAA
ACTTTTACGAGTTCTTTTAT
Found at i:16330 original size:172 final size:172
Alignment explanation
Indices: 16040--16377 Score: 514
Period size: 172 Copynumber: 2.0 Consensus size: 172
16030 AACTTTTACG
* *
16040 AGTTCTTTTATAACTTCGATTCCTTAAAGTAATCAAGACGATCCATTCCTTCGAGCAATTTTTCG
1 AGTTCTTTTATAACTTCGATTCCTTAAAGTAATCAACACGATCCATTCCTTCGAGCAATTTTCCG
* * * *
16105 AACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTGTTATTTTGTAAACAACTTTT
66 AACATTCCAAGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAAATTTT
* *
16170 GGTCTTTGAATTTAAAACTAATTTAGGTGAGAATTGAAAACA
131 GGTCTTTGAATTAAAAAATAATTTAGGTGAGAATTGAAAACA
* * * * *
16212 AGTTCTTTTATAACTTTGGTTCGTTAAAGTATTTAACACGATCCATTCCTTCGAGCAATTTTCCG
1 AGTTCTTTTATAACTTCGATTCCTTAAAGTAATCAACACGATCCATTCCTTCGAGCAATTTTCCG
* *
16277 AACATTCCAAGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAAATTTT
66 AACATTCCAAGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAAATTTT
** *
16342 GGTCTTTGAATTAAAAAATTCTTTATGTGAGAATTG
131 GGTCTTTGAATTAAAAAATAATTTAGGTGAGAATTG
16378 TTTCTTTCTT
Statistics
Matches: 148, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
172 148 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (172 bp):
AGTTCTTTTATAACTTCGATTCCTTAAAGTAATCAACACGATCCATTCCTTCGAGCAATTTTCCG
AACATTCCAAGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAAATTTT
GGTCTTTGAATTAAAAAATAATTTAGGTGAGAATTGAAAACA
Found at i:17145 original size:215 final size:214
Alignment explanation
Indices: 16763--21166 Score: 3392
Period size: 215 Copynumber: 20.7 Consensus size: 214
16753 TTTTGTAAAA
* * * * ** ** *
16763 AAAAAGTTATTTATGTTAGAATTGTTTCTTTCTTTATTCTCGGTTAAAC-TTCTGAACTTGAGAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTC-GTCGAACTTTC-GAACTTGACAA
* * * * * *
16827 ACTTTAACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAGGACGATCCATTCTTTCGATC
64 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * *
16892 AATTTTCCA-TACAGTCCATGCT-TGGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTTT
129 AATTTT-CAGAACATTCCATGCTCT-AGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGT
* * *
16955 AAACTACTTTTTGTCTTTTAATT
192 AAACAACTTTTGGTCTTTGAATT
* * *
16978 AAAAACTTATTTAGGTGAAAATTGTTTCTC-CTTTGGTTCTCAGTTGAACTTTCGAACTTGAAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTC-TTGGTTCTC-GTCGAACTTTCGAACTTGACAA
* * * * *
17042 ACTTTTACAAGTTCTTTTATAACTTTGATTCGTTAAACTATTCAAGACGATCCATTCCATCGAGC
64 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * *
17107 AATTTTAAGAACATTCCATGCTCTAGAAATCGCATCATTTAGTCTAAATAGTTGACATTATGTAA
129 AATTTTCAGAACATTCCATGCTCTAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
17172 ACAACTTTTGGTCTTTGAATT
194 ACAACTTTTGGTCTTTGAATT
* * * * *
17193 AAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTAGGCTGAACTTCCGAAGTTGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGTC-GAACTTTCGAACTTGACAAA
** * * *
17258 CTTTTATTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAACCATTCCTTCGAGAA
65 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * *
17323 ATTTTCTGAACATTCCAAGCT-TAGGAAATCTCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
130 ATTTTCAGAACATTCCATGCTCTA-GAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
17387 ACAACTTTTGGTCTTTGAATT
194 ACAACTTTTGGTCTTTGAATT
* * * * * * *
17408 AAAAAATTCTTTATGTGAGAATTGTTTCTTTCTTAGTTCTCGATCGAAATTT-AAACTTGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCG-TCGAACTTTCGAACTTGACAAA
* * * * *
17472 CTTTTACAAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACAATCCATTCCTTTGAGCA
65 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * ** *
17537 ATTTTCTGTACAGTCCATGCT-TGGAAAATCACATCATTAAGTCTACATAGTTGTCATTTTGTAA
130 ATTTTCAGAACATTCCATGCTCTAG-AAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
* *
17601 ACTACTTTTGGT-TTTCCAATT
194 ACAACTTTTGGTCTTT-GAATT
* * * * * *
17622 AAAAACTTATTTAGGTGAGAATTGTTTCCCTTTTGGTTCTCAGTCGCACTTACGAACCTGAAAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTC-GTCGAACTTTCGAACTTGACAAA
* * * * * *
17687 ATTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCTTTCCTTTGAGCA
65 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * *
17752 ATTTTCCA-AACATTTCATGCTCGAGAAATCGCATAATTTGGTCTAAATAATTGTAATTTTGTAA
130 ATTTT-CAGAACATTCCATGCTCTAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
* *
17816 ATAACTTTTTGTCTTTGAATT
194 ACAACTTTTGGTCTTTGAATT
* * * * *
17837 AAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTAGGCTGAACTTTCGAAGTTAACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGTC-GAACTTTCGAACTTGACAAA
* *
17902 CTTTTACGACTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAC-A---A-TCCTTCGAGAA
65 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * *
17962 ATTTT-ATGAACATTCCAAGCTC-AGGAAATCGTATCAGTTGGTCTAAATAGTTGTCATTTTATA
130 ATTTTCA-GAACATTCCATGCTCTA-GAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
*
18025 AAAAACTTTTGGTCTTTGAATT
193 AACAACTTTTGGTCTTTGAATT
* * * * * * * *
18047 AAAAAACTTATTTAGGTTATAATAGTTTCTCTCTAGGTTCTGGGCCTAACTTTCGAACTTGAAAA
1 -AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCT-CGTCGAACTTTCGAACTTGACAA
* * * *
18112 ACCTTTACGAGTTCTTTTTTAACTTTGGTTCCTTAAATTATTCAAGACGATCCATACCTTCGTA-
64 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-AG
* ** * *
18176 CAATTTTTCA-AACATTCCATTCTCGGGAAATCGCATCAATTGTTCTAAATAGATTGTCATTTTG
128 CAA-TTTTCAGAACATTCCATGCTCTAGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTG
* *
18240 TAAACAATTTTTGGTTTTTGAATT
191 TAAACAACTTTTGGTCTTTGAATT
* * * * * * *
18264 AAAAACTTA-TTATGTAAGAATTGTTTCTTTCTAGGTTCTCGACCGAACTTCCGGACTTGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCG-TCGAACTTTCGAACTTGACAAA
* ** * *
18328 CTTTTATGAGTTCTTTTATAACTTTTATTCCTTAAAGTATTCAAGACGATCCATTCCTCCCAGCC
65 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-C
* * * * *
18393 ATTTTTC-GAACAATCCATGCTCTGGAAATCG--T-ATTTGGT-TCAAATAGTTATCATTTTATA
129 AATTTTCAGAACATTCCATGCTCTAGAAATCGCATCATTTGGTCT-AAATAGTTGTCATTTTGTA
18453 AACAACTTTTGGTCTTTGAATT
193 AACAACTTTTGGTCTTTGAATT
* * * * * * * * *
18475 AAAAACTTATTTAGGTGATAATAGTTCCTTTCTAGGATCTCGACAGAATTTTCGAACATGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGTC-GAACTTTCGAACTTGACAAA
* * * * ** *
18540 CATTTAAGAGTTCTTTGT-TGACTTCGACTCCTTAAAGTATTCAAGATGATCCATTCCTTCGCA-
65 CTTTTACGAGTTCTTT-TATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-AG
* * * **
18603 TAATTTTC-GAAACATTCCATGCTCTAGAAATCGTATCATTTGTTCTAAATAGATTGGAATTTTG
128 CAATTTTCAG-AACATTCCATGCTCTAGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTG
*
18667 TAAACAACTTTTGGTCTTTAAATT
191 TAAACAACTTTTGGTCTTTGAATT
* * ** * *
18691 AAAAAGTTATTTATGTGAGAATTACTTCTCTCTTGGTTCTCGATCGAACTTCCGAACTTGGCAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCG-TCGAACTTTCGAACTTGACAAA
* ** *
18756 CTTTTACGAGTTGTTTTATAACTTTTATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCC
65 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-C
* * * * * *
18821 ATTTTTC-GAACAGTCCAAGCT-TGCGAAATCACATCATTAT-GTCTAAATAGTTGCCATTTTGT
129 AATTTTCAGAACATTCCATGCTCT-AGAAATCGCATCATT-TGGTCTAAATAGTTGTCATTTTGT
*
18883 AAACTACTTTTGGTCTTTGAATT
192 AAACAACTTTTGGTCTTTGAATT
* * *
18906 AAAAACTTATTTAGGTGCGAATTGTTTCTTTCTTGGTTCTCGATCGAACTTTCAAACTTGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCG-TCGAACTTTCGAACTTGACAAA
* *
18971 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCA
65 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
*
19036 ATTTTTC-GAACATTCAATGCT-TGAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
130 A-TTTTCAGAACATTCCATGCTCT-AGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
*
19099 AACAACTTTTGGTCTTTGAATA
193 AACAACTTTTGGTCTTTGAATT
** * * *
19121 AAAAACTTATTTAGGTGAGAA-TAATT-TCTCTTGGTTCACAGTCAAACTTTCGAAGTTGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTC-GTCGAACTTTCGAACTTGACAAA
* * * * * *
19184 CTTTTACGAGCTCTTTTATAACATCGGTTCCATAAATTATTCAAGATGATCCATTCCTTCGAGCA
65 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
** * * * *
19249 ATTTTTTGAACATTCCATACTC-AGGAAATCGCATTATCTGGTCTAAATAGTTGTCATTTTATAA
130 ATTTTCAGAACATTCCATGCTCTA-GAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
*
19313 ACAACATTTGGTCTTTGAATT
194 ACAACTTTTGGTCTTTGAATT
* * * *
19334 AAAAACTTATTTAGGTGATAATAGTTTCTCTCTTGGTTCTCGGTCGAACTTTCGAAGTTAACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTC-GTCGAACTTTCGAACTTGACAAA
* * * * *
19399 CATTTAGGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGTGCA
65 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * *
19464 ATTTTTCA-AACATTCCATG-TTTGGGAAATCGCATTAATTGTTCTAAATAGATTGTCATTTTGT
130 A-TTTTCAGAACATTCCATGCTCT-AGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTGT
* * * *
19527 AAAAAACTTATGTTCTTTAAATT
192 AAACAACTTTTGGTCTTTGAATT
* * * *
19550 AAAATGC-TATTTATGTGAGAATTGTTT-TTTCTTGGTTCTCGGTCGAACTTTCGAACTTGAAAA
1 AAAA-ACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTC-GTCGAACTTTCGAACTTGACAA
** * *** * * *
19613 ACTTTT----GTTCCATAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGA-AC-ATT
64 ACTTTTACGAGTT-C-T--TTTA-T-AA-CT--TTGGTTCCTT--A--AAGTATTCAAGACGA-T
* * * * * * * **
19672 CCA-TGCTT-G-GGAA--ATCA-AATC-TT--TTGGTCTA-AATATTTG--TCATTTTGTAAACA
115 CCATTCCTTCGAGCAATTTTCAGAA-CATTCCATGCTCTAGAA-A-TCGCATCATTTGGTCTA-A
* * * ** * **
19725 ACT-TTTGGTC--TTTGAATTAAAAAAGTTATTTATGTGAGAATTGCT
176 A-TAGTT-GTCATTTTG---TAAACAACTT-TTGGTCTTTGAA-T--T
***** * * * * * * ** ** *
19770 TCTTTCTTGGTTCTCGGTCGA-AATTCGAACTTGACAAACTTTTACTAGTTCTTTTATAACTTTT
1 AAAAACTT-ATT-TAGGT-GAGAATT-G---TT-TC--TC-TCT--TGGTTCTCGTCGAACTTTC
** * * * * ** * * **
19834 GTTCCTT---AAAGTATTCAAGACGATCCATT-T--CTTCGAG---C---AA-TTTTC-AGAATA
53 G-AACTTGACAAACT-TTTACGA-GTTCTTTTATAACTTTG-GTTCCTTAAAGTATTCAAGACGA
* * * * * * * *
19885 GTCTA-TGC-TCGAG-AA--ATCACATCATT---TGGTCTA-AATAGTTG--TCATTT--TATAA
114 -TCCATTCCTTCGAGCAATTTTCAGAACATTCCATGCTCTAGAA-A-TCGCATCATTTGGTCT-A
* * **
19937 AATACTTTTGGTGTTTG--A---A----------TT-AA--
175 AATAGTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAATT
**** * *
19960 AAACTTATATTTAGTTGAGAATTGTTTCTCTCTTGGTTCTCAGTCGAACTTTTGAACTTGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTC-GTCGAACTTTCGAACTTGACAAA
* * * * *** * * *
20025 CTTTTACGAGCTATTCTATAACATCAATTCATTAAAGTATTTAAGACGATCCATTCCTTTGCA-C
65 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-AGC
* * *
20089 AATTTTTC-GAACATTCCATGCTC-AGGAAATTGCATCATATGGTCTAAATAGTTGTCATTTTAT
129 AA-TTTTCAGAACATTCCATGCTCTA-GAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGT
*
20152 AAACAACTTTTGGTCTTTAAATT
192 AAACAACTTTTGGTCTTTGAATT
* * * * * * * * * *
20175 AAAAACATATTTAAGCGATAATAGTTCCTCTCTTAGTTCTCAGCCAAACTTTCGAAGTTGAC--A
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTC-GTCGAACTTTCGAACTTGACAAA
* * * *
20238 -----A--A---C-TTT-T-ACTTGGGTTCCATAAAGTATTCAACACGATCCATTCTTTCGAGCA
65 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * * *
20290 ATTTTTCA-AATATTCTATGCT-TGGGAAATCGCATAAATTGTTCCAAATAGATTGTCATTTTGT
130 A-TTTTCAGAACATTCCATGCTCT-AGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTGT
*
20353 GAACAACTTTTGGTCTTTGAA-T
192 AAACAACTTTTGGTCTTTGAATT
* *
20375 AAAAATGTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTCGGTCGAACTTTCGAACTTGACAA
1 AAAAA-CTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTC-GTCGAACTTTCGAACTTGACAA
* * * *
20440 ACTTTTACGAGTTCTTTTAAAACTTTTGTTCCTTAAAGTATTCAAGACGAACCATTCTTTCGAGC
64 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* *
20505 AGTTTTTC-GAACATTCCATGCT-TGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGT
129 A-ATTTTCAGAACATTCCATGCTCT-AGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGT
20568 AAACAACTTTTGGTCTTTGAATT
192 AAACAACTTTTGGTCTTTGAATT
* * * * * * * * *
20591 AAAAAATTCTTTATGTGATAATTGTTTCTTTCTTGGTTCTAGGCTAAACTTT-AAACTTGACAAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGTC-GAACTTTCGAACTTGACAAA
* * *
20655 CTTTTACAAGTTCTTTTATAACTTTTGTTCGTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
65 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * *
20720 ATTTTTC-GTACAGTCCATGCT-TGGCAAATCGCATCATTAGG-ATAAATAGTTGTCATTTTTTA
130 A-TTTTCAGAACATTCCATGCTCTAG-AAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* *
20782 AACAAATTTTGGTTTTTGAATT
193 AACAACTTTTGGTCTTTGAATT
* * * * * *
20804 AAAAACTTATTTAGGTGAGAATTATTTCTCTCTTTGTTCTCAGCCGAACTTCCGAACTTGGCTAA
1 AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTC-GTCGAACTTTCGAACTTGACAAA
* * *
20869 CTTTTGCGTGTTCTTTTATAACTTTGGTTCCTTAAAGTAATCAAGACGATCCATTCCTTCGAGCA
65 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * *
20934 ATTTTCCGAACATTCCATGCT-TGAGAAATCACATCATTTGGTCTAAATAGTTGTTATTTTGTAA
130 ATTTTCAGAACATTCCATGCTCT-AGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
20998 ACAACTTTTGGTCTTTGAATT
194 ACAACTTTTGGTCTTTGAATT
*** * * **
21019 AAAAAC-TATTTTAGGTGAGAATAAATTCTCTCTTGGTTCTGGGCCGAACTTTCGAGGTTGACAA
1 AAAAACTTA-TTTAGGTGAGAATTGTTTCTCTCTTGGTTCT-CGTCGAACTTTCGAACTTGACAA
** *
21083 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTAATT-AAGACGATTAATTCATTCGAG
64 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGT-ATTCAAGACGATCCATTCCTTCGAG
*
21147 CAATTTTCTGAACATTCCAT
128 CAATTTTCAGAACATTCCAT
21167 TGATACGAGT
Statistics
Matches: 3363, Mismatches: 614, Indels: 424
0.76 0.14 0.10
Matches are distributed among these distances:
178 9 0.00
179 12 0.00
180 8 0.00
181 5 0.00
182 3 0.00
183 1 0.00
184 2 0.00
187 5 0.00
188 13 0.00
189 8 0.00
190 4 0.00
191 3 0.00
193 5 0.00
194 2 0.00
195 6 0.00
196 5 0.00
197 10 0.00
198 9 0.00
199 4 0.00
200 77 0.02
201 76 0.02
202 3 0.00
203 1 0.00
206 1 0.00
207 1 0.00
208 3 0.00
209 1 0.00
210 81 0.02
211 148 0.04
212 137 0.04
213 283 0.08
214 423 0.13
215 1479 0.44
216 388 0.12
217 60 0.02
218 4 0.00
219 1 0.00
220 13 0.00
221 3 0.00
222 14 0.00
223 9 0.00
224 9 0.00
226 3 0.00
230 5 0.00
231 4 0.00
232 10 0.00
233 9 0.00
235 1 0.00
236 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (214 bp):
AAAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGTCGAACTTTCGAACTTGACAAAC
TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
TTTTCAGAACATTCCATGCTCTAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAAC
AACTTTTGGTCTTTGAATT
Found at i:18829 original size:428 final size:422
Alignment explanation
Indices: 16763--21133 Score: 4361
Period size: 428 Copynumber: 10.3 Consensus size: 422
16753 TTTTGTAAAA
* * * * ** ** *
16763 AAAAAGTTATTTATGTTAGAATTGTTTCTTTCTTTATTCTCGGTTAAAC-TTCTGAACTTGAGAA
1 AAAAACTTATTTAGGTGAGAATAGTTTCTTTCTTGGTTCTCGG-CGAACTTTC-GAACTTGACAA
* ** * * *
16827 ACTTTAACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAGGACGATCCATTCTTTCG-AT
64 ACTTTTACGAGTTCTTTT-TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGCA-
* * * * * *
16891 CAATTTTCCATACAGTCCATGCTTGGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTTTA
127 -AATTTT-CAAACATTCCATGCTT-AGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * *
16956 AACTACTTTTTGTCTTTTAATTAAAAACTTATTTAGGTGAAAATTGTTTCTC-CTTTGGTTCTC-
189 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTC-TTGGTTCTCG
* * * * *
17019 AGTTGAACTTTCGAACTTGAAAAACTTTTACAAGTTCTTTTATAAC-TTTGATTCGTTAAACTAT
253 A-TCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTG-TTCCTTAAAGTAT
* ** * *
17083 TCAAGACGATCCATTCCATCGAGCAATTTTAAGAACATTCCATGCTCTAGAAATCGCATCATTTA
316 TCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT-TGGAAAT--CATCATTTG
* *
17148 GTCTAAATAGTTGACATTATGTAAACAACTTTTGGTCTTTGAATT
378 GTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * *
17193 AAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTAGGCTGAACTTCCGAAGTTGACAAA
1 AAAAACTTATTTAGGTGAGAATAGTTTCTTTCTTGGTTCTCGGC-GAACTTTCGAACTTGACAAA
** * *
17258 CTTTTATTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAACCATTCCTTCGAGAA
65 CTTTTACGAGTTCTTTT-TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-CAA
* * *
17323 ATTTTCTGAACATTCCAAGCTTAGGAAATCTCATCATTTGGTCTAAATAGTTGTCATTTTGTAAA
128 ATTTTC-AAACATTCCATGCTTA-GAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAA
* * * *
17388 CAACTTTTGGTCTTTGAATTAAAAAATTCTTTATGTGAGAATTGTTTCTTTCTTAGTTCTCGATC
191 CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTCGATC
* * * *
17453 GAAATTT-AAACTTGACAAACTTTTACAAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAG
256 GAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAG
* * * * **
17517 ACAATCCATTCCTTTGAGCAA-TTTTCTGTACAGTCCATGCTTGGAAAATCACATCATTAAGTCT
321 ACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTTGG-AAAT--CATCATTTGGTCT
* * *
17581 ACATAGTTGTCATTTTGTAAACTACTTTTGGT-TTTCCAATT
382 AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTT-GAATT
* * * * * * *
17622 AAAAACTTATTTAGGTGAGAATTGTTTCCCTT-TTGGTTCTCAGTCGCACTTACGAACCTGAAAA
1 AAAAACTTATTTAGGTGAGAATAGTTT-CTTTCTTGGTTCTC-GGCGAACTTTCGAACTTGACAA
* * * * *
17686 AATTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCTTTCCTTTG-AG
64 ACTTTTACGAGTTCTTT-TTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGCA-
* * * * *
17750 CAATTTTCCAAACATTTCATGCTCGAGAAATCGCATAATTTGGTCTAAATAATTGTAATTTTGTA
127 -AATTTT-CAAACATTCCATGCT-TAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
* * * * *
17815 AATAACTTTTTGTCTTTGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTAG-
189 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTCGA
* * * * *
17879 GCTGAACTTTCGAAGTTAACAAACTTTTACGACTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
254 TC-GAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTC
* * * *
17944 AAGAC-A---A-TCCTTCGAGAAATTTTAT-GAACATTCCAAGCTCAGGAAATCGTATCAGTTGG
318 AAGACGATCCATTCCTTCGAGCAATTTT-TCGAACATTCCATGCT-TGGAAATC--ATCATTTGG
* *
18003 TCTAAATAGTTGTCATTTTATAAAAAACTTTTGGTCTTTGAATT
379 TCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
18047 AAAAAACTTATTTAGGTTATAATAGTTTCTCTCTAGGTTCTGGGCCTAACTTTCGAACTTGAAAA
1 -AAAAACTTATTTAGGTGAGAATAGTTTCTTTCTTGGTTCTCGG-CGAACTTTCGAACTTGACAA
* * * *
18112 ACCTTTACGAGTTCTTTTTTAACTTTGGTTCCTTAAATTATTCAAGACGATCCATACCTTCGTAC
64 ACTTTTACGAGTTC-TTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG--C
* * ** * *
18177 AATTTTTCAAACATTCCATTCTCGGGAAATCGCATCAATTGTTCTAAATAGATTGTCATTTTGTA
126 AAATTTTCAAACATTCCATGCT-TAGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTGTA
* * * * *
18242 AACAATTTTTGGTTTTTGAATTAAAAACTTA-TTATGTAAGAATTGTTTCTTTCTAGGTTCTCGA
189 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTCGA
* * * * *
18306 CCGAACTTCCGGACTTGACAAACTTTTATGAGTTCTTTTATAACTTTTATTCCTTAAAGTATTCA
254 TCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCA
* * * * *
18371 AGACGATCCATTCCTCCCAGCCATTTTTCGAACAATCCATGCTCTGGAAATCGT-ATTTGGT-TC
319 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT-TGGAAATCATCATTTGGTCT-
* *
18434 AAATAGTTATCATTTTATAAACAACTTTTGGTCTTTGAATT
382 AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
18475 AAAAACTTATTTAGGTGATAATAGTTCCTTTCTAGGATCTCGACAGAATTTTCGAACATGACAAA
1 AAAAACTTATTTAGGTGAGAATAGTTTCTTTCTTGGTTCTCGGC-GAACTTTCGAACTTGACAAA
* * * ** *
18540 CATTTAAGAGTTCTTTGTTGACTTCGACTCCTTAAAGTATTCAAGATGATCCATTCCTTCGCATA
65 CTTTTACGAGTTCTTT-TTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGCA-A
* * **
18605 ATTTTCGAAACATTCCATGCTCTAGAAATCGTATCATTTGTTCTAAATAGATTGGAATTTTGTAA
128 ATTTTC-AAACATTCCATGCT-TAGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTGTAA
* * **
18670 ACAACTTTTGGTCTTTAAATTAAAAAGTTATTTATGTGAGAATTACTTCTCTCTTGGTTCTCGAT
190 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTCGAT
* * * *
18735 CGAACTTCCGAACTTGGCAAACTTTTACGAGTTGTTTTATAACTTTTATTCCTTAAAGTATTCAA
255 CGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAA
* * * *
18800 GACAATCCATTCCTTCGAGCCATTTTTCGAACAGTCCAAGCTTGCGAAATCACATCATTAT-GTC
320 GACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTG-GAAAT--CATCATT-TGGTC
* *
18864 TAAATAGTTGCCATTTTGTAAACTACTTTTGGTCTTTGAATT
381 TAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * *
18906 AAAAACTTATTTAGGTGCGAATTGTTTCTTTCTTGGTTCTCGATCGAACTTTCAAACTTGACAAA
1 AAAAACTTATTTAGGTGAGAATAGTTTCTTTCTTGGTTCTCG-GCGAACTTTCGAACTTGACAAA
* *
18971 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCA
65 CTTTTACGAGTTCTTTT-TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC--GCA
* * *
19036 ATTTTTCGAACATTCAATGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAA
127 AATTTTCAAACATTCCATGCTT-AGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAA
* * ** *
19101 CAACTTTTGGTCTTTGAATAAAAAACTTATTTAGGTGAGAA-TAATT-TCTCTTGGTTCAC-AGT
191 CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTCGA-T
* * * * ** * *
19163 CAAACTTTCGAAGTTGACAAACTTTTACGAGCTCTTTTATAACATCGGTTCCATAAATTATTCAA
255 CGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAA
* * * * * *
19228 GATGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATACTCAGGAAATCGCATTATCTGGTCT
320 GACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT-TGGAAAT--CATCATTTGGTCT
* *
19293 AAATAGTTGTCATTTTATAAACAACATTTGGTCTTTGAATT
382 AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * *
19334 AAAAACTTATTTAGGTGATAATAGTTTCTCTCTTGGTTCTCGGTCGAACTTTCGAAGTTAACAAA
1 AAAAACTTATTTAGGTGAGAATAGTTTCTTTCTTGGTTCTCGG-CGAACTTTCGAACTTGACAAA
* *
19399 CATTTAGGAGTTCTTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGTGCA
65 CTTTTACGAGTTC-TTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC--GCA
* * * * * *
19464 ATTTTTCAAACATTCCATGTTTGGGAAATCGCATTAATTGTTCTAAATAGATTGTCATTTTGTAA
127 AATTTTCAAACATTCCATGCTT-AGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTGTAA
* * * * * * *
19529 AAAACTTATGTTCTTTAAATTAAAATGC-TATTTATGTGAGAATTGTTT-TTTCTTGGTTCTCGG
190 ACAACTTTTGGTCTTTGAATTAAAA-ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTCGA
*
19592 TCGAACTTTCGAACTTG----------A--A--------A-AACTTTTGTTCCATAAAGTATTCA
254 TCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCA
* *
19636 AGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCAAATCTTTTGGTC
319 AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTT-GGAAATC--ATCATTTGGTC
*
19701 TAAATATTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
381 TAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * *
19743 AAAAAAGTTATTTATGTGAGAATTGCTTCTTTCTTGGTTCTCGGTCGAA-ATTCGAACTTGACAA
1 -AAAAACTTATTTAGGTGAGAATAGTTTCTTTCTTGGTTCTCGG-CGAACTTTCGAACTTGACAA
* ** *
19807 ACTTTTACTAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCG-AG
64 ACTTTTACGAGTTCTTTT-TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGCA-
* * * * * *
19871 CAATTTTCAGAATAGTCTATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTGTCATTTTATA
127 -AATTTTCA-AACATTCCATGCT-TAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTA
*
19936 AA-ATACTTTTGGTGTTTGAATTAAAAACTTATATT-TAGTTGAGAATTGTTTCTCTCTTGGTTC
189 AACA-ACTTTTGGTCTTTGAATTAAAAACTTAT-TTAT-G-TGAGAATTGTTTCTCTCTTGGTTC
* * * * * *** *
19999 TC-AGTCGAACTTTTGAACTTGACAAACTTTTACGAGCTATTCTATAACATCAATTCATTAAAGT
250 TCGA-TCGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGT
* * *
20063 ATTTAAGACGATCCATTCCTTTGCA-CAATTTTTCGAACATTCCATGCTCAGGAAATTGCATCAT
314 ATTCAAGACGATCCATTCCTTCG-AGCAATTTTTCGAACATTCCATGCT-TGGAAA-T-CATCAT
* * *
20127 ATGGTCTAAATAGTTGTCATTTTATAAACAACTTTTGGTCTTTAAATT
375 TTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * * * * *
20175 AAAAACATATTTAAGCGATAATAGTTCCTCTCTTAGTTCTCAGCCAAACTTTCGAAGTTGAC--A
1 AAAAACTTATTTAGGTGAGAATAGTTTCTTTCTTGGTTCTC-GGCGAACTTTCGAACTTGACAAA
* * * *
20238 -----A--A---C-TTTT-ACTTGGGTTCCATAAAGTATTCAACACGATCCATTCTTTCGAGCAA
65 CTTTTACGAGTTCTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC--GCAA
* * * * * * * * *
20291 TTTTTCAAATATTCTATGCTTGGGAAATCGCATAAATTGTTCCAAATAGATTGTCATTTTGTGAA
128 ATTTTCAAACATTCCATGCTT-AGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTTTGTAAA
* *
20356 CAACTTTTGGTCTTTGAA-TAAAAATGTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTCGGT
191 CAACTTTTGGTCTTTGAATTAAAAA-CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTCGAT
*
20420 CGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTAAAACTTTTGTTCCTTAAAGTATTCAA
255 CGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAA
* * *
20485 GACGAACCATTCTTTCGAGCAGTTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCT
320 GACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTT-GGAAAT--CATCATTTGGTCT
20550 AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
382 AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * * *
20591 AAAAAATTCTTTATGTGATAATTGTTTCTTTCTTGGTTCTAGGCTAAACTTT-AAACTTGACAAA
1 AAAAACTTATTTAGGTGAGAATAGTTTCTTTCTTGGTTCTCGGC-GAACTTTCGAACTTGACAAA
* ** *
20655 CTTTTACAAGTTCTTTTATAACTTTTGTTCGTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
65 CTTTTACGAGTTCTTTT-TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC--GCA
* ** * * * * *
20720 ATTTTTCGTACAGTCCATGCTTGGCAAATCGCATCATTAGG-ATAAATAGTTGTCATTTTTTAAA
127 AATTTTCAAACATTCCATGCTTAG-AAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAA
* * * * * *
20784 CAAATTTTGGTTTTTGAATTAAAAACTTATTTAGGTGAGAATTATTTCTCTCTTTGTTCTC-AGC
191 CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTCGA-T
* * * * * * *
20848 CGAACTTCCGAACTTGGCTAACTTTTGCGTGTTCTTTTATAACTTTGGTTCCTTAAAGTAATCAA
255 CGAACTTTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAA
*
20913 GACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTTGAGAAATCACATCATTTGGTCT
320 GACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTG-GAAAT--CATCATTTGGTCT
*
20978 AAATAGTTGTTATTTTGTAAACAACTTTTGGTCTTTGAATT
382 AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
** * * **
21019 AAAAAC-TATTTTAGGTGAGAATAAATTCTCTCTTGGTTCTGGGCCGAACTTTCGAGGTTGACAA
1 AAAAACTTA-TTTAGGTGAGAATAGTTTCTTTCTTGGTTCTCGG-CGAACTTTCGAACTTGACAA
*
21083 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTAATT-AAGACGAT
64 ACTTTTACGAGTTCTTTT-TAACTTCGGTTCCTTAAAGT-ATTCAAGACGAT
21134 TAATTCATTC
Statistics
Matches: 3286, Mismatches: 508, Indels: 295
0.80 0.12 0.07
Matches are distributed among these distances:
406 1 0.00
407 4 0.00
408 47 0.01
409 210 0.06
410 55 0.02
411 28 0.01
415 11 0.00
416 212 0.06
417 77 0.02
418 42 0.01
419 5 0.00
420 3 0.00
421 1 0.00
422 1 0.00
423 3 0.00
424 1 0.00
425 72 0.02
426 237 0.07
427 237 0.07
428 748 0.23
429 469 0.14
430 432 0.13
431 253 0.08
432 131 0.04
433 5 0.00
434 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (422 bp):
AAAAACTTATTTAGGTGAGAATAGTTTCTTTCTTGGTTCTCGGCGAACTTTCGAACTTGACAAAC
TTTTACGAGTTCTTTTTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGCAAATT
TTCAAACATTCCATGCTTAGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAACAACT
TTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTCGATCGAACT
TTCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGAT
CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGAAATCATCATTTGGTCTAAATAGTTG
TCATTTTGTAAACAACTTTTGGTCTTTGAATT
Found at i:25524 original size:215 final size:214
Alignment explanation
Indices: 24600--26321 Score: 1846
Period size: 215 Copynumber: 8.1 Consensus size: 214
24590 CTGATTTTCC
* * * * * *
24600 AATTAAAAACTTATTTAGGTGAGAATTGTTTCCCTTTTGGTTCTCGATCAAACTTACAAACCTGA
1 AATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCGA-CGAACTTTCAAACTTGA
* * * * * *
24665 AAAACTTTTATGAGTTCTTTCATAACTTTGATTCCTTAAAGTATTCAAGATGATCCATTCCTTTG
65 CAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* * * * * * *
24730 A-CCAATTTTCCAAACGTTCCATGCTC-GAAAAATCACATAATTTGGTCTAAATAGTTGTAATTT
130 AGCC-ATTTTTCGAACATTCCATGCTCAG-GAAATCGCATCATTTGGTCTAAATAGTTGTCATTT
*
24793 TGTAAACAACTTTTGATCTTTG
193 TGTAAACAACTTTTGGTCTTTG
* * ** * *
24815 AATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTAGGCTGAACTTTTGAAGTTAA
1 AATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCGAC-GAACTTTCAAACTTGA
* *
24880 CAAACTTTTACGACTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG----A-TCCTTCG
65 CAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* * * *
24940 AG-CAATTTTCTGAACATTCCAAGCTCAGGAAATTGCATCATTTGGTCTAAATAGTTGTTATTTT
130 AGCCATTTTTC-GAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTT
* *
25004 ATAAAAAAAAACTTTTGGTCTTTG
194 GT---AAACAACTTTTGGTCTTTG
* * * *
25028 AATTAAAAAACTTATTTAGGTGATAATAGTTTCTCTCTAGGTTCTGGGCCGAACTTTCAAACTTG
1 AATT-AAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCT-CGACGAACTTTCAAACTTG
* * * * * * **
25093 AAAAACCTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAATTATTCAAGACGATCTACACCTTC
64 ACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTC
** * * * * * *
25158 GAGGAATTTTTCAAACATTTCATTCTCAGAAAATCGCATCAATTGTTCTAAATAGATTGTCATTT
129 GAGCCATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAG-TTGTCATTT
*
25223 TGTAAACAACTTTTGGTCTTTA
193 TGTAAACAACTTTTGGTCTTTG
* * * * * * *
25245 AATTAAAAACTTATTTATGTAAGAATTGTTTCTTTCTAGGTTCTTGACCGAACTTCCAAACTTGA
1 AATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCGA-CGAACTTTCAAACTTGA
* ** * *
25310 CAAACTTTTATGAGTTCTTTTATAACTTTTATTCCTTAAAGTATTCAAGACGATCCATTCCTCCC
65 CAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* * * *
25375 AGCCATTTTTCGAACAATCCATGCTCTGGAAATCGTATCATTTAGT-TCAAATAGTTGTCATTTT
130 AGCCATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCT-AAATAGTTGTCATTTT
25439 GTAAACAACTTTTGGTCTTTG
194 GTAAACAACTTTTGGTCTTTG
* * * *
25460 AATTAAAAACTTATTTAGGTGATAATAGTTCCTCTCTAGGTTCTCGACAGAACTTTCGAACTTGA
1 AATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCGAC-GAACTTTCAAACTTGA
* * * *
25525 CAAACATTTAAGAGTTCTTTGT-TGACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTC
65 CAAACTTTTACGAGTTCTTT-TATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * *
25589 GCA-CAATTTTCCGAACATTCCATGCTCGGGAAATCG--T-A--T-G-------A-TCGACATTT
129 G-AGCCATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTT
* *
25639 TGTAAACAAATTTTGGTCTTTA
193 TGTAAACAACTTTTGGTCTTTG
* * * * * **
25661 AATTAAAAAGTTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGTTCGAACTTTTGAACTTGA
1 AATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCG-ACGAACTTTCAAACTTGA
* ** *
25726 CAAACTTTTACGAGTTGTTTTATAACTTTTATTCCTTAAAGTATTCAAGACAATCCATTCCTTCG
65 CAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
** * **
25791 AGCCATTTTTCGAACAGTT-CATGCTTGGGAAATTGCATCATTAT-GTCTAAATAGTTACCATTT
130 AGCCATTTTTCGAACA-TTCCATGCTCAGGAAATCGCATCATT-TGGTCTAAATAGTTGTCATTT
*
25854 TGTAAACTACTTTTGGTCTTTG
193 TGTAAACAACTTTTGGTCTTTG
* * *
25876 AATTAAAAACTTATTTAGGTGTGAATTGTTTCTTTCTTGGTTCTCGATCGAACTTTCAAACTTGA
1 AATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCGA-CGAACTTTCAAACTTGA
* * *
25941 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCA
65 CAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
** * * *
26006 AGTAATTTTTTGAACATTACATGCTC-GAGAAATCGCATCATTTTGTCTAAATAGTTGTCATTTT
130 AGCCATTTTTCGAACATTCCATGCTCAG-GAAATCGCATCATTTGGTCTAAATAGTTGTCATTTT
*
26070 GTAAACAACTTTTGATCTTTG
194 GTAAACAACTTTTGGTCTTTG
* * * * *
26091 AATTAAAAACTTATTTAGGTGAGAATAATTTCTCTCTTGGTTCACGATCGAACTTCCGAAGTTGA
1 AATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCGA-CGAACTTTCAAACTTGA
* * * *
26156 CAAACTTTTACGAGTTCTTTTATAACATCGGTTCCATAAATTATTCAAGACGATCCATTCCTTCG
65 CAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* * * *
26221 AGCGA-TTTTCTAAAAATTCCATGTTCAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTT
130 AGCCATTTTTC-GAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTT
* ** *
26285 ATAAACAAAATTCGGTCTTTG
194 GTAAACAACTTTTGGTCTTTG
26306 AATTAAAAACTTATTT
1 AATTAAAAACTTATTT
26322 TAGAAAGAAC
Statistics
Matches: 1267, Mismatches: 195, Indels: 90
0.82 0.13 0.06
Matches are distributed among these distances:
200 2 0.00
201 162 0.13
202 4 0.00
203 1 0.00
204 1 0.00
207 2 0.00
209 6 0.00
210 53 0.04
211 2 0.00
212 1 0.00
213 22 0.02
214 108 0.09
215 676 0.53
216 146 0.12
217 21 0.02
218 1 0.00
219 43 0.03
220 16 0.01
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (214 bp):
AATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCGACGAACTTTCAAACTTGAC
AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
GCCATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGT
AAACAACTTTTGGTCTTTG
Found at i:25733 original size:416 final size:422
Alignment explanation
Indices: 24600--26321 Score: 1653
Period size: 416 Copynumber: 4.0 Consensus size: 422
24590 CTGATTTTCC
* * * * * * *
24600 AATTAAAAACTTATTTAGGTGAGAATTGTTTCC-CTTTTGGTTCTCGATCAAACTTACAAACCTG
1 AATTAAAAACTTATTTAGGTGTGAATAG-TTCCTCTCTAGGTTCTCGATCGAACTTTCAAACTTG
* * * * * * *
24664 AAAAACTTTTATGAGTTCTTTCATAACTTTGATTCCTTAAAGTATTCAAGATGATCCATTCCTTT
65 ACAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * * * * * *
24729 GACCAATTTTCCAAACGTTCCATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTGTA-ATTT
130 AAGCAATTTTCCGAACATTACATGCTCGAGAAATC-GATCA-TT-G-----A-AGTCG-ACATTT
* * * * *
24793 TGTAAACAACTTTTGATCTTTGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTC
185 TGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTATGTGAGAATTGTTTCTTTCTTGGTTC
* * ** * * * ***
24858 TAG-GCTGAACTTTTGAAGTTAACAAACTTTTACGACTTCTTTTATAACTTCGGTTCCTTAAAGT
250 TCGATC-GAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTATTCCTTAAAGT
* * * * *
24922 ATTCAAGACG----A-TCCTTCGAG-CAATTTTCTGAACATTCCAAGCTCAGGAAATTGCATCAT
314 ATTCAAGACGATCCATTCCTTCGAGCCATTTTTC-GAACAATCCATGCTCTGGAAATCGCATCAT
* * * *
24981 TT-GGTCTAAATAGTTGTTATTTTATAAAAAAAAACTTTTGGTCTTTG
378 TTAGTTCTAAATAGTTGTCATTTTGT---AAACAACTTTTGGTCTTTG
* * **
25028 AATTAAAAAACTTATTTAGGTGAT-AATAGTTTCTCTCTAGGTTCTGGGCCGAACTTTCAAACTT
1 AATT-AAAAACTTATTTAGGTG-TGAATAGTTCCTCTCTAGGTTCTCGATCGAACTTTCAAACTT
* * * * * * * **
25092 GAAAAACCTTTACGAGTTCTTTTTTAACTTCGGTTCCTTAAATTATTCAAGACGATCTACACCTT
64 GACAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * * * * * * *
25157 CGAGGAATTTTTCAAACATTTCATTCTC-AGAAAATCGCATCAATTGTTCTAAATAGATTGTCAT
129 CAAGCAATTTTCCGAACATTACATGCTCGAG-AAATCG-ATC-ATTG------A-AG-TCGACAT
* *
25221 TTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTATGTAAGAATTGTTTCTTTCTAGGT
183 TTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTATGTGAGAATTGTTTCTTTCTTGGT
* * * *
25286 TCTTGACCGAACTTCCAAACTTGACAAACTTTTATGAGTTCTTTTATAACTTTTATTCCTTAAAG
248 TCTCGATCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTATTCCTTAAAG
* * *
25351 TATTCAAGACGATCCATTCCTCCCAGCCATTTTTCGAACAATCCATGCTCTGGAAATCGTATCAT
313 TATTCAAGACGATCCATTCCTTCGAGCCATTTTTCGAACAATCCATGCTCTGGAAATCGCATCAT
25416 TTAGTTC-AAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTG
378 TTAGTTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTG
*
25460 AATTAAAAACTTATTTAGGTGAT-AATAGTTCCTCTCTAGGTTCTCGA-CAGAACTTTCGAACTT
1 AATTAAAAACTTATTTAGGTG-TGAATAGTTCCTCTCTAGGTTCTCGATC-GAACTTTCAAACTT
* *
25523 GACAAACATTTAAGAGTTCTTTGT-TGACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCT
64 GACAAACATTTAAGAGTTCTTT-TATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCT
* * *
25587 TCGCA-CAATTTTCCGAACATTCCATGCTCGGGAAATCG-T-A-TG-A-TCGACATTTTGTAAAC
128 TC-AAGCAATTTTCCGAACATTACATGCTCGAGAAATCGATCATTGAAGTCGACATTTTGTAAAC
* * *
25646 AAATTTTGGTCTTTAAATTAAAAAGTTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGTTCG
192 AACTTTTGGTCTTTAAATTAAAAACTTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGATCG
** *
25711 AACTTTTGAACTTGACAAACTTTTACGAGTTGTTTTATAACTTTTATTCCTTAAAGTATTCAAGA
257 AACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTATTCCTTAAAGTATTCAAGA
* * * *
25776 CAATCCATTCCTTCGAGCCATTTTTCGAACAGTTCATGCT-TGGGAAATTGCATCA-TTA-TGTC
322 CGATCCATTCCTTCGAGCCATTTTTCGAACAATCCATGCTCT-GGAAATCGCATCATTTAGT-TC
** *
25838 TAAATAGTTACCATTTTGTAAACTACTTTTGGTCTTTG
385 TAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTG
* * * *
25876 AATTAAAAACTTATTTAGGTGTGAATTGTTTCTTTCTTGGTTCTCGATCGAACTTTCAAACTTGA
1 AATTAAAAACTTATTTAGGTGTGAATAGTTCCTCTCTAGGTTCTCGATCGAACTTTCAAACTTGA
* * * *
25941 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCA
66 CAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCA
* ** * *
26006 AGTAATTTTTTGAACATTACATGCTCGAGAAATCGCATCATTTTGTCTAAATAGTTGTCATTTTG
131 AGCAATTTTCCGAACATTACATGCTCGAGAAATCG-ATCA--TTG-----A-AGTCGACATTTTG
* * * ** * *
26071 TAAACAACTTTTGATCTTTGAATTAAAAACTTATTTAGGTGAGAATAATTTCTCTCTTGGTTCAC
187 TAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTC
* * *** * *
26136 GATCGAACTTCCGAAGTTGACAAACTTTTACGAGTTCTTTTATAACATCGGTTCCATAAATTATT
252 GATCGAACTTCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTATTCCTTAAAGTATT
* * * * *
26201 CAAGACGATCCATTCCTTCGAGCGA-TTTTCTAAAAATTCCATGTTCAGGAAATCGCATCATTT-
317 CAAGACGATCCATTCCTTCGAGCCATTTTTCGAACAA-TCCATGCTCTGGAAATCGCATCATTTA
* * ** *
26264 GGTCTAAATAGTTGTCATTTTATAAACAAAATTCGGTCTTTG
381 GTTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTG
26306 AATTAAAAACTTATTT
1 AATTAAAAACTTATTT
26322 TAGAAAGAAC
Statistics
Matches: 1083, Mismatches: 165, Indels: 90
0.81 0.12 0.07
Matches are distributed among these distances:
414 1 0.00
415 9 0.01
416 352 0.33
417 1 0.00
418 2 0.00
419 1 0.00
422 2 0.00
426 2 0.00
427 1 0.00
428 9 0.01
429 146 0.13
430 336 0.31
431 135 0.12
432 25 0.02
434 1 0.00
435 50 0.05
436 10 0.01
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (422 bp):
AATTAAAAACTTATTTAGGTGTGAATAGTTCCTCTCTAGGTTCTCGATCGAACTTTCAAACTTGA
CAAACATTTAAGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCA
AGCAATTTTCCGAACATTACATGCTCGAGAAATCGATCATTGAAGTCGACATTTTGTAAACAACT
TTTGGTCTTTAAATTAAAAACTTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGATCGAACT
TCCGAACTTGACAAACTTTTACGAGTTCTTTTATAACTTTTATTCCTTAAAGTATTCAAGACGAT
CCATTCCTTCGAGCCATTTTTCGAACAATCCATGCTCTGGAAATCGCATCATTTAGTTCTAAATA
GTTGTCATTTTGTAAACAACTTTTGGTCTTTG
Found at i:26002 original size:631 final size:637
Alignment explanation
Indices: 24600--26255 Score: 1975
Period size: 631 Copynumber: 2.6 Consensus size: 637
24590 CTGATTTTCC
* * *
24600 AATTAAAAACTTATTTAGGTGAGAATTGTTTCCCTT-TTGGTTCTCGATCAAACTTACAAACCTG
1 AATTAAAAACTTATTTAGGTGAGAATTGTTT-CTTTCTTGGTTCTCGATCGAACTTACAAACTTG
* * * *
24664 AAAAACTTTTATGAGTTCTTTCATAACTTTGATTCCTTAAAGTATTCAAGATGATCCATTCCTTT
65 ACAAACTTTTATGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * * * * *
24729 GA-CCAATTTTCCAAACGTTCCATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTGTAATTT
130 AAGCC-ATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTT-GTCTAAATAGTTGTCATTT
24793 TGTAAACAACTTTTGATCTTTGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTC
193 TGTAAACAACTTTTGATCTTTGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTC
* * * * *
24858 TAGGCTGAACTTTTGAAGTTAACAAACTTTTACGACTTCTTTTATAACTTCGGTTCCTTAAAGTA
258 TCGAC-GAACTTTCGAAGTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * *
24923 TTC-A-AGA-CGA-TCCTTCGAGCAATTTTCTGAACATTCCAAGCTCAGGAAATTGCATCATTTG
322 TTCAAGAGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAA-T-CGTCA-TTG
* ** *
24984 GTCTAAATAGTTGTTATTTTATAAAAAAAAACTTTTGGTCTTTGAATTAAAAAACTTATTTAGGT
384 G-----A-AGTCGACATTTTAT-AAAAAAAACTTTTGGTCTTTAAATTAAAAAACTTATTTAGGT
* *
25049 GATAATAGTTTCTCTCTAGGTTCTGGGCCGAACTTTCAAACTTGAAAAACCTTTACGAGTTCTTT
442 GAGAATAGTTTCTCTCTAGGTTCTCGGCCGAACTTTCAAACTTGAAAAACCTTTACGAGTTCTTT
* * * * * * *
25114 TTTAACTTCGGTTCCTTAAATTATTCAAGACGATCTACACCTTCGAGGAATTTTTCAAACATTTC
507 TATAACTTCGATTCCTTAAAGTATTCAAGACAATCCACACCTTCGAGCAATTTTTCAAACAGTTC
* **
25179 ATTCTCAGAAAATCGCATCAATTGTTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTT
572 ATGCTCAGAAAATCGCATCAATTGTTCTAAATAGATTACCATTTTGTAAACAACTTTTGGTCTTT
25244 A
637 A
* * * * * *
25245 AATTAAAAACTTATTTATGTAAGAATTGTTTCTTTCTAGGTTCTTGACCGAACTTCCAAACTTGA
1 AATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGATCGAACTTACAAACTTGA
* * *
25310 CAAACTTTTATGAGTTCTTTTATAACTTTTATTCCTTAAAGTATTCAAGACGATCCATTCCTCCC
66 CAAACTTTTATGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCA
* *
25375 AGCCATTTTTCGAACAATCCATGCTCTG-GAAATCGTATCATTTAGT-TCAAATAGTTGTCATTT
131 AGCCATTTTTCGAACATTCCATGCTC-GAGAAATCGCATCATTT-GTCT-AAATAGTTGTCATTT
* * * *
25438 TGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAGGTGATAATAGTTCCTCTCTAGGTTC
193 TGTAAACAACTTTTGATCTTTGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTC
* * * * *
25503 TCGACAGAACTTTCGAACTTGACAAACATTTAAGAGTTCTTTGT-TGACTTCGATTCCTTAAAGT
258 TCGAC-GAACTTTCGAAGTTGACAAACTTTTACGAGTTCTTT-TATAACTTCGGTTCCTTAAAGT
* *
25567 ATTCAAGATGATCCATTCCTTCGCA-CAATTTTCCGAACATTCCATGCTCGGGAAATCGT-A-T-
321 ATTCAAGA-GATCCATTCCTTCG-AGCAATTTTCTGAACATTCCATGCTCAGGAAATCGTCATTG
* * * * *
25628 G-A-TCGACATTTTGT-AAACAAA-TTTTGGTCTTTAAATT-AAAAAGTTATTTATGTGAGAATT
384 GAAGTCGACATTTTATAAAAAAAACTTTTGGTCTTTAAATTAAAAAACTTATTTAGGTGAGAATA
* * ** ** * * *
25688 GTTTCTTTCTTGGTTCTCGTTCGAACTTTTGAACTTGACAAACTTTTACGAGTTGTTTTATAACT
449 GTTTCTCTCTAGGTTCTCGGCCGAACTTTCAAACTTGAAAAACCTTTACGAGTTCTTTTATAACT
** ** * * **
25753 TTTATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCCATTTTTCGAACAGTTCATGCTTG
514 TCGATTCCTTAAAGTATTCAAGACAATCCACACCTTCGAGCAATTTTTCAAACAGTTCATGCTCA
* * * * *
25818 GGAAATTGCATC-ATTATGTCTAAATAG-TTACCATTTTGTAAACTACTTTTGGTCTTTG
579 GAAAATCGCATCAATTGT-TCTAAATAGATTACCATTTTGTAAACAACTTTTGGTCTTTA
* *
25876 AATTAAAAACTTATTTAGGTGTGAATTGTTTCTTTCTTGGTTCTCGATCGAACTTTCAAACTTGA
1 AATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGATCGAACTTACAAACTTGA
* * * *
25941 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCA
66 CAAACTTTTATGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCA
** * *
26006 AGTAATTTTTTGAACATTACATGCTCGAGAAATCGCATCATTTTGTCTAAATAGTTGTCATTTTG
131 AGCCATTTTTCGAACATTCCATGCTCGAGAAATCGCATCA-TTTGTCTAAATAGTTGTCATTTTG
* *
26071 TAAACAACTTTTGATCTTTGAATTAAAAACTTATTTAGGTGAGAATAATTTCTCTCTTGGTTCAC
195 TAAACAACTTTTGATCTTTGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTC
* * * *
26136 GATCGAACTTCCGAAGTTGACAAACTTTTACGAGTTCTTTTATAACATCGGTTCCATAAATTATT
260 GA-CGAACTTTCGAAGTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * *
26201 CAAGACGATCCATTCCTTCGAGCGATTTTCTAAAAATTCCATGTTCAGGAAATCG
324 CAAGA-GATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCG
26256 CATCATTTGG
Statistics
Matches: 862, Mismatches: 131, Indels: 50
0.83 0.13 0.05
Matches are distributed among these distances:
630 3 0.00
631 355 0.41
632 147 0.17
633 15 0.02
634 6 0.01
636 8 0.01
637 1 0.00
644 5 0.01
645 273 0.32
646 5 0.01
647 2 0.00
648 4 0.00
649 3 0.00
650 34 0.04
651 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (637 bp):
AATTAAAAACTTATTTAGGTGAGAATTGTTTCTTTCTTGGTTCTCGATCGAACTTACAAACTTGA
CAAACTTTTATGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCA
AGCCATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGTCTAAATAGTTGTCATTTTGT
AAACAACTTTTGATCTTTGAATTAAAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTCG
ACGAACTTTCGAAGTTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
AGAGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCGTCATTGGAAGTCG
ACATTTTATAAAAAAAACTTTTGGTCTTTAAATTAAAAAACTTATTTAGGTGAGAATAGTTTCTC
TCTAGGTTCTCGGCCGAACTTTCAAACTTGAAAAACCTTTACGAGTTCTTTTATAACTTCGATTC
CTTAAAGTATTCAAGACAATCCACACCTTCGAGCAATTTTTCAAACAGTTCATGCTCAGAAAATC
GCATCAATTGTTCTAAATAGATTACCATTTTGTAAACAACTTTTGGTCTTTA
Found at i:27201 original size:29 final size:29
Alignment explanation
Indices: 27169--27270 Score: 107
Period size: 29 Copynumber: 3.4 Consensus size: 29
27159 AAAGTTTGGA
27169 AAGTTTAGGGGTTAAAATGTAATTTTTAG
1 AAGTTTAGGGGTTAAAATGTAATTTTTAG
** * *
27198 AAGTTTAATGGTTAAAATGCAATTTTTAAA
1 AAGTTTAGGGGTTAAAATGTAATTTTT-AG
* * *
27228 AAGTTTA-GGGATCAAATTTGAATTTTTAG
1 AAGTTTAGGGGTTAAAATGT-AATTTTTAG
27257 AAAGTTTAGGGGTT
1 -AAGTTTAGGGGTT
27271 GAAACATAAT
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
29 32 0.55
30 22 0.38
31 4 0.07
ACGTcount: A:0.36, C:0.02, G:0.22, T:0.40
Consensus pattern (29 bp):
AAGTTTAGGGGTTAAAATGTAATTTTTAG
Found at i:27282 original size:30 final size:30
Alignment explanation
Indices: 27167--27283 Score: 116
Period size: 30 Copynumber: 3.9 Consensus size: 30
27157 TAAAAGTTTG
27167 GAAAGTTTAGGGGTTAAA-ATGTAATTTTTA
1 GAAAGTTTAGGGGTTAAATATG-AATTTTTA
**
27197 G-AAGTTTAATGGTTAAA-ATGCAATTTTTA
1 GAAAGTTTAGGGGTTAAATATG-AATTTTTA
* * * *
27226 AAAAGTTTAGGGATCAAATTTGAATTTTTA
1 GAAAGTTTAGGGGTTAAATATGAATTTTTA
*
27256 GAAAGTTTAGGGGTTGAAACAT-AATTTT
1 GAAAGTTTAGGGGTT-AAATATGAATTTT
27284 AAAATAAAAC
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
29 25 0.36
30 39 0.56
31 6 0.09
ACGTcount: A:0.38, C:0.03, G:0.21, T:0.39
Consensus pattern (30 bp):
GAAAGTTTAGGGGTTAAATATGAATTTTTA
Found at i:28772 original size:17 final size:18
Alignment explanation
Indices: 28745--28782 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
28735 TAATTTGAAA
*
28745 TAAATTTTTAAATTATTT
1 TAAATTTTTAAAATATTT
28763 TAAA-TTTTAAAATATTT
1 TAAATTTTTAAAATATTT
28780 TAA
1 TAA
28783 TAATTTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TAAATTTTTAAAATATTT
Found at i:28788 original size:26 final size:25
Alignment explanation
Indices: 28746--28797 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
28736 AATTTGAAAT
*
28746 AAATTTTTAAATTATTTTAAATTTTA
1 AAATTTTTAAATAATTTT-AATTTTA
*
28772 AAATATTTT-AATAATTTTTATTTTA
1 AAAT-TTTTAAATAATTTTAATTTTA
28797 A
1 A
28798 TTTTAGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 7 0.30
26 12 0.52
27 4 0.17
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
AAATTTTTAAATAATTTTAATTTTA
Found at i:28797 original size:32 final size:36
Alignment explanation
Indices: 28757--28833 Score: 101
Period size: 32 Copynumber: 2.2 Consensus size: 36
28747 AATTTTTAAA
28757 TTATTTTAAATTTTA-AAAT-A-TTTT-AATAATTT
1 TTATTTTAAATTTTAGAAATAAGTTTTAAATAATTT
28789 TTATTTT-AATTTTAGAAATAAAGTTTTAAATAATTT
1 TTATTTTAAATTTTAGAAAT-AAGTTTTAAATAATTT
28825 TTAATTTTA
1 TT-ATTTTA
28834 GAAAGAGTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
31 7 0.18
32 11 0.29
34 1 0.03
35 4 0.11
36 10 0.26
37 5 0.13
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (36 bp):
TTATTTTAAATTTTAGAAATAAGTTTTAAATAATTT
Found at i:30095 original size:19 final size:19
Alignment explanation
Indices: 30068--30104 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
30058 GTCCAAGTGC
*
30068 ATAACTAGTATTACACCAT
1 ATAACTAGTACTACACCAT
*
30087 ATAATTAGTACTACACCA
1 ATAACTAGTACTACACCA
30105 CATTAAAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.22, G:0.05, T:0.30
Consensus pattern (19 bp):
ATAACTAGTACTACACCAT
Found at i:31099 original size:32 final size:32
Alignment explanation
Indices: 31058--31133 Score: 109
Period size: 32 Copynumber: 2.4 Consensus size: 32
31048 TGTCAATCAT
*
31058 TTCAATATCCAACAAGC-TTGAAACATAATAAA
1 TTCAATATCCAACAA-CTTTAAAACATAATAAA
*
31090 TTCAATATCCAACAACTTTAAAACATAATAAT
1 TTCAATATCCAACAACTTTAAAACATAATAAA
*
31122 TTCAAAATCCAA
1 TTCAATATCCAA
31134 AACAAAATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
31 1 0.03
32 39 0.98
ACGTcount: A:0.50, C:0.20, G:0.03, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAACTTTAAAACATAATAAA
Found at i:37992 original size:18 final size:18
Alignment explanation
Indices: 37973--38035 Score: 110
Period size: 18 Copynumber: 3.6 Consensus size: 18
37963 TTTTTTTAAT
*
37973 TTTTAATTTT-ATTTTCA
1 TTTTCATTTTCATTTTCA
37990 TTTTCATTTTCATTTTCA
1 TTTTCATTTTCATTTTCA
38008 TTTTCATTTTCATTTTCA
1 TTTTCATTTTCATTTTCA
38026 TTTTCATTTT
1 TTTTCATTTT
38036 TTAAATTTTA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
17 9 0.20
18 35 0.80
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTCATTTTCATTTTCA
Found at i:37998 original size:12 final size:12
Alignment explanation
Indices: 37973--38035 Score: 110
Period size: 12 Copynumber: 5.3 Consensus size: 12
37963 TTTTTTTAAT
*
37973 TTTTAATTTT-A
1 TTTTCATTTTCA
37984 TTTTCATTTTCA
1 TTTTCATTTTCA
37996 TTTTCATTTTCA
1 TTTTCATTTTCA
38008 TTTTCATTTTCA
1 TTTTCATTTTCA
38020 TTTTCATTTTCA
1 TTTTCATTTTCA
38032 TTTT
1 TTTT
38036 TTAAATTTTA
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
11 9 0.18
12 41 0.82
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTTCATTTTCA
Found at i:38044 original size:7 final size:6
Alignment explanation
Indices: 37966--38057 Score: 69
Period size: 6 Copynumber: 14.8 Consensus size: 6
37956 AGCTTAATTT
* * * * *
37966 TTTTAA TTTTTAA TTTT-A TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA
1 TTTTAA -TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
* * *
38014 TTTTCA TTTTCA TTTTCATT TTTTAAA TTTTAA TTTTAA TTTTA
1 TTTTAA TTTTAA TTTT-A-A TTTT-AA TTTTAA TTTTAA TTTTA
38058 TTATGCACTG
Statistics
Matches: 78, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
5 5 0.06
6 58 0.74
7 10 0.13
8 5 0.06
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTTAA
Found at i:38057 original size:12 final size:12
Alignment explanation
Indices: 37973--38056 Score: 89
Period size: 12 Copynumber: 6.8 Consensus size: 12
37963 TTTTTTTAAT
37973 TTTTAATTTT-A
1 TTTTAATTTTCA
*
37984 TTTTCATTTTCA
1 TTTTAATTTTCA
*
37996 TTTTCATTTTCA
1 TTTTAATTTTCA
*
38008 TTTTCATTTTCA
1 TTTTAATTTTCA
*
38020 TTTTCATTTTCA
1 TTTTAATTTTCA
*
38032 TTTTTTAAATTTTAA
1 --TTTT-AATTTTCA
38047 TTTTAATTTT
1 TTTTAATTTT
38057 ATTATGCACT
Statistics
Matches: 66, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
11 9 0.14
12 43 0.65
13 4 0.06
14 4 0.06
15 6 0.09
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTAATTTTCA
Found at i:40307 original size:41 final size:41
Alignment explanation
Indices: 40238--40411 Score: 217
Period size: 41 Copynumber: 4.2 Consensus size: 41
40228 TCGATTCATA
* * *
40238 AGTCTTCCTT-TTACCATATTCTCATTCTCATCTCAAGACAAG
1 AGTCTTCCTTATT--CATAATCTCATTCTCATCTCGAGACATG
*
40280 AGTCTTCCTTATTCATAATCTCATTCTCATCTCGACACATG
1 AGTCTTCCTTATTCATAATCTCATTCTCATCTCGAGACATG
* *
40321 ATTCTTCCTTATTCATAATCTCATTCTCATCTTGAGACATG
1 AGTCTTCCTTATTCATAATCTCATTCTCATCTCGAGACATG
* * *
40362 AGTCTTCCTTATTCATAAATCCCATGCTCAT-TCTGAGTCATG
1 AGTCTTCCTTATTCAT-AATCTCATTCTCATCTC-GAGACATG
40404 AGTCTTCC
1 AGTCTTCC
40412 ATTTTTTTAC
Statistics
Matches: 117, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
41 78 0.67
42 37 0.32
43 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.09, T:0.40
Consensus pattern (41 bp):
AGTCTTCCTTATTCATAATCTCATTCTCATCTCGAGACATG
Found at i:41306 original size:22 final size:21
Alignment explanation
Indices: 41259--41306 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
41249 GACTTTCATA
*
41259 ATTAACTTAATTAATCATCTT
1 ATTAACTTAATTAATCATATT
* *
41280 TTTAACCTTAATTAATCTTATT
1 ATTAA-CTTAATTAATCATATT
41302 ATTAA
1 ATTAA
41307 TCAATATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTAACTTAATTAATCATATT
Found at i:44732 original size:12 final size:13
Alignment explanation
Indices: 44717--44745 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
44707 ATTTATGTTT
44717 ATATAAAAAA-TA
1 ATATAAAAAATTA
44729 ATATAAAAAATTA
1 ATATAAAAAATTA
44742 ATAT
1 ATAT
44746 GGGTGGGTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
ATATAAAAAATTA
Done.