Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013024.1 Kokia drynarioides strain JFW-HI SEQ_128042, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1993
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.31

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:902 original size:12 final size:12

Alignment explanation


    Indices: 885--910  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        875 AATATGTGTA

                        
        885 ACTGGATTTTCG
          1 ACTGGATTTTCG

                        
        897 ACTGGATTTTCG
          1 ACTGGATTTTCG

              
        909 AC
          1 AC

        911 GTCATTCGCC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.19, C:0.19, G:0.23, T:0.38


Consensus pattern (12 bp):   
ACTGGATTTTCG
Done.