genome.fa.s13025.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013025.1 Kokia drynarioides strain JFW-HI SEQ_128043, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53779

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4801--4862	30	2.1	29	85	11	81	45	6	11	37	1.66
6314--6365	23	2.3	24	80	9	56	69	0	13	17	1.19
10008--10032	4	6.2	4	100	0	50	24	0	0	76	0.80
21543--21596	23	2.4	23	87	6	76	22	0	1	75	0.89
23771--23802	12	2.6	13	90	9	50	18	28	0	53	1.45
23987--24061	31	2.6	29	81	12	82	33	0	0	66	0.92
23940--24064	48	2.7	46	83	9	148	29	0	0	68	1.00
23978--24053	18	4.6	17	70	27	65	34	0	0	65	0.93
24005--24064	29	2.2	26	80	13	68	31	0	0	68	0.90
25683--25724	18	2.3	18	87	0	57	30	40	4	23	1.75
25968--26109	59	2.4	59	91	2	223	31	8	11	48	1.69
26499--26555	21	2.7	21	79	12	64	54	17	0	28	1.43
28973--29039	31	2.2	30	84	5	82	37	10	8	43	1.71
29961--29990	3	9.7	3	92	7	51	0	0	30	70	0.88
38530--38587	6	9.7	6	78	14	57	46	0	0	53	1.00
38530--38587	17	3.6	16	75	13	57	46	0	0	53	1.00
44737--44784	22	2.2	22	85	7	62	39	10	8	41	1.69
45346--45437	44	2.1	44	89	4	141	51	16	21	10	1.75
46443--46623	96	1.9	96	84	6	242	37	13	18	30	1.89
46452--46647	96	2.0	96	79	9	204	38	12	17	31	1.87
46840--46901	28	2.2	28	88	0	88	29	9	29	32	1.89
46973--47224	59	4.3	58	80	9	183	36	2	24	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47002--47184	29	6.2	28	73	12	134	35	1	25	37	1.66
47061--47236	89	2.0	89	86	4	248	38	3	22	35	1.71
47032--47231	59	3.4	58	86	4	256	37	2	23	37	1.68
47002--47236	30	7.9	30	76	6	219	35	2	24	37	1.69
48332--48390	21	2.8	21	84	2	73	37	6	1	54	1.37
48403--48454	12	4.2	12	85	7	59	40	5	0	53	1.25
48412--48456	22	2.0	22	86	0	63	37	4	0	57	1.19
48407--48454	25	1.9	25	91	0	78	39	4	0	56	1.19
49184--49275	6	15.8	6	70	10	66	52	3	1	43	1.24
49184--49271	35	2.5	34	82	8	106	52	3	1	43	1.25
49185--49257	29	2.5	29	82	6	85	52	2	1	43	1.24
49184--49275	17	5.3	18	77	6	84	52	3	1	43	1.24
51840--52024	96	1.9	96	84	4	248	35	12	19	31	1.90
52433--52823	29	13.4	28	68	18	133	33	3	26	36	1.74
52442--52753	58	5.4	57	73	8	236	33	4	25	36	1.75
52430--52810	116	3.3	115	82	6	387	33	3	25	37	1.74

Tables:   1

The End!