Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013026.1 Kokia drynarioides strain JFW-HI SEQ_128044, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8037
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:6164 original size:36 final size:35

Alignment explanation


    Indices: 6124--6193  Score: 97
    Period size: 36  Copynumber: 2.0  Consensus size: 35

       6114 AAATTTAAAA

                                         *       
       6124 AATTTAATATTATATATAGTTATTTA-TATTATTTTT
          1 AATTTAATATT-TA-ATAGTTATTTATTAATATTTTT

                            *                 
       6160 AATTTAATATTTAATATTTATTTATTAATATTTT
          1 AATTTAATATTTAATAGTTATTTATTAATATTTT

       6194 ATATATTGTT


Statistics
Matches: 31,  Mismatches: 2, Indels: 3
        0.86            0.06        0.08

Matches are distributed among these distances:
  34   10  0.32
  35   10  0.32
  36   11  0.35

ACGTcount: A:0.37, C:0.00, G:0.01, T:0.61


Consensus pattern (35 bp):   
AATTTAATATTTAATAGTTATTTATTAATATTTTT

Found at i:6205 original size:21 final size:21

Alignment explanation


    Indices: 6163--6205  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       6153 TATTTTTAAT

                             *   
       6163 TTAATATTTAATATTTATTTA
          1 TTAATATTTAATATTTAGTTA

                     *            
       6184 TTAATATTTTATATATT-GTTA
          1 TTAATATTTAATAT-TTAGTTA

             
       6205 T
          1 T

       6206 CTTAAGATTT


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  21   17  0.89
  22    2  0.11

ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63


Consensus pattern (21 bp):   
TTAATATTTAATATTTAGTTA
Done.