Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013027.1 Kokia drynarioides strain JFW-HI SEQ_128045, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11293
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37


Found at i:1037 original size:24 final size:24

Alignment explanation


    Indices: 994--1039  Score: 65
    Period size: 24  Copynumber: 1.9  Consensus size: 24

        984 AAGATTTAAT

                     *              
        994 ATTTATTAGTATAATATATTTGGC
          1 ATTTATTAGCATAATATATTTGGC

                         * *      
       1018 ATTTATTAGCATATTTTATTTG
          1 ATTTATTAGCATAATATATTTG

       1040 ACTTAAGAAT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  24   19  1.00

ACGTcount: A:0.30, C:0.04, G:0.11, T:0.54


Consensus pattern (24 bp):   
ATTTATTAGCATAATATATTTGGC

Found at i:4859 original size:6 final size:6

Alignment explanation


    Indices: 4848--4886  Score: 51
    Period size: 6  Copynumber: 6.5  Consensus size: 6

       4838 TGATTAAAAT

                                      *   *  *           
       4848 TGAAAG TGAAAG TGAAAG TGAAAT TGGAAT TGAAAG TGA
          1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGA

       4887 TATGAATTGT


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   6   29  1.00

ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23


Consensus pattern (6 bp):   
TGAAAG

Found at i:6076 original size:12 final size:12

Alignment explanation


    Indices: 6059--6084  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       6049 AACCGGGTGT

                        
       6059 AGGGGTGTTACA
          1 AGGGGTGTTACA

                        
       6071 AGGGGTGTTACA
          1 AGGGGTGTTACA

              
       6083 AG
          1 AG

       6085 TATAATATAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.27, C:0.08, G:0.42, T:0.23


Consensus pattern (12 bp):   
AGGGGTGTTACA
Done.