Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013028.1 Kokia drynarioides strain JFW-HI SEQ_128046, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8774
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.27
Warning! 50 characters in sequence are not A, C, G, or T
Found at i:945 original size:215 final size:216
Alignment explanation
Indices: 1--2392 Score: 2091
Period size: 216 Copynumber: 11.1 Consensus size: 216
* * * *
1 TAATTCAAAGACCAACAGTTGTTCACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
1 TAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
* *
66 GAGCATGGAATGTTCGGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCGAA
66 GAGCATGGAATGTTCAGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAA
* * * * ** *
131 GTTGTAAAAGAACTCGTAAAAGTTTGACTAGTCCGTAAGTTCTTCTGAGAACCAAGAGTGAAACA
131 GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACA
196 ATTCTCACGTAAATAAGTTTT
196 ATTCTCACGTAAATAAGTTTT
* * * *
217 TAATTTAAAGACCAAAATTTGTTTGA-AAAATCACAAACTATTTAGACCAAAAGATGCGATTTTC
1 TAATTTAAAGACCAAAAGTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* *
281 GGAGCATGGAATGTTCAGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTGAGGAACCAA
65 CGAGCATGGAATGTTCAGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAA
** * * * * *
346 AGTTATCGAAGAATTCGTAAAAGTTCGACCAGTTCGTAAGTTCGTCCTAGAACCACA-AGAGGAA
130 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCA-AGAGAGAAA
* *
410 CAATTCTCACTTAAATAGGTTTT
194 CAATTCTCACGTAAATAAGTTTT
* * * * * * * * *
433 TAATTTGAAGACTAAAAGTTGTTTACATAATGACAAAGTTTTTGGACCGAATGATACGA-TTCCA
1 TAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
* * * * * * **
497 GAGCATGGAAAGTTC-GAAAAATTGG-TCGAAGGAATGGATCGTCTTGAGTACTCTCAGGAACTT
66 GAGCATGGAATGTTCAG-AAAA-TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCA
* * ** * * * ** * *
560 AAGTTACAAAAGAGCTATTAAATGTTCCG-CAAGTACAAAAGTACGTCCAAG-A--AA-AGTGAA
129 AAGTTATAAAAGAACTCGTAAAAGTT-TGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
620 ACAATTCTCACGTAAATAAGTTTT
193 ACAATTCTCACGTAAATAAGTTTT
* *
644 T-ATTTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTCT
1 TAATTT-AAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * * *
708 CGAGCTTTGAATGTTCAGAAAATGGCTCAAATGAATGGATAGTCTTGAGTACTTTAAGGAACCAA
65 CGAGCATGGAATGTTCAGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAA
* * * *
773 AGTTGTAAAAGAACTCGTAAAAGTTTGACTAGTCCGTAAGTTCGTCCGAGAACCAAGAGAGAAAC
130 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAAC
838 AATTCTCACGTAAATAAG-TTT
195 AATTCTCACGTAAATAAGTTTT
* * * * * *
859 TAATTTACAGACCAAAATTTGTTTGCAAAATCACAAACTATTTAGACCAAAAGATGCGATTTCCG
1 TAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
*
924 GAGCATGGAATGTTCAGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTGAGGAACCAAA
66 GAGCATGGAATGTTCAGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAA
* * * * *
989 GTTATTAAAGAACTCGTAAAAGTTCGACCAGTTCGTAAGTTCGTCCTAGAACCACA-AGAGTAAC
131 GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCA-AGAGAGAAAC
* *
1053 AATTCTCAAGTAAATAGGTTTT
195 AATTCTCACGTAAATAAGTTTT
* ** * * * * * * * *
1075 AAATTCGAATACTAAAAGTTGTTTACATAATGACAAAGTTTTTGGACCGAATGATACGA-TTCCC
1 TAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
* * * * * *
1139 GAGCATGGAAAGTTC-GAAAAATTGG-TCGAAGGAATGGATCGTCTTGAGTACTCTCAGG-----
66 GAGCATGGAATGTTCAG-AAAA-TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCA
* * ** * * * * * * *
1197 AAGTTACAAAAGAGCTATTAAATGTTCCG-CAAGTACGGAAGTTCATCCAAGAACCATGAGAGAC
129 AAGTTATAAAAGAACTCGTAAAAGTT-TGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* *
1261 ACAATTCTCGCATAAATAAGTTTT
193 ACAATTCTCACGTAAATAAGTTTT
* * * * * *
1285 TAATTCAAAGACCAAAAATTGTTTAGAAAATGATAACCTATTTAGACCAAATGATGTC-ATTTCT
1 TAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCC
* * * * * * * *
1349 CGGGTATGGAATGCTTGA-AAAATTGCACAAAGGAATGGATCA-CCTTTAATAGTTTAAGGAACC
65 CGAGCATGGAATG-TTCAGAAAATGGCTCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACC
* * * * * * *
1412 GACGTTATAAAGGAACT-GATAAAAAGTTAGACAACTTTAG-AAGTTCGTCCAAGAACCAAGAGT
128 AAAGTTATAAAAGAACTCG-T-AAAAGTTTGACAA-GTTCGTAAGTTCGTCCAAGAACCAAGAGA
* ** *
1475 GAAACAATTGTCGTGTAAAT-A-TATT
190 GAAACAATTCTCACGTAAATAAGTTTT
* * * *
1500 T-ATTTCAAAGACGAAAAGTTGATTACAAAATGAAAAACTATTTAGACCAAACGATGCGATTTCC
1 TAATTT-AAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * * * * * * **
1564 CAAGCGTAGAATGTTCGGAAAATTGCTCGAAGGAATGGATTGTCTTGAATACTTTAAGGAACTGA
65 CGAGCATGGAATGTTCAGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAA
* * * * *
1629 AGTTATAAAAGAACTCATAAAAGATTGACAAGTTTGAAAGTTCAG-CCAAGAACAAAGAGAGAAA
130 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTC-GTCCAAGAACCAAGAGAGAAA
* *
1693 CAGTTCTCACGTATATAAGTTTT
194 CAATTCTCACGTAAATAAGTTTT
* * * * * * **
1716 TAATTCAAAGAACAAAAGTTGTTTACGAAATGACAAACTATGTAGACCAAATAATACGATTTTTC
1 TAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
* * * ** * * * *
1781 AAGCATTGAATGTT-TGAAAAACTGG-TTGAAGG-ATAGGATCGGCTTGAATAATTTAAGGAATC
66 GAGCATGGAATGTTCAG-AAAA-TGGCTCAAAGGAAT-GGATAGTCTTGAATACTTTAAGGAACC
* * * * * * *
1843 GATGTTATAAAAGAACACGTAAAATTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAA
128 AAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
*
1908 ACAATTCTCAGGTAAATAAGTTTT
193 ACAATTCTCACGTAAATAAGTTTT
* * * * * * ***
1932 CAAGTCAAAGACCAAATGTTGTTTACAAAATTAAAAAAC-ATTTAGAATGAATGATGCGATTTCC
1 TAATTTAAAGACCAAAAGTTGTTTACAAAA-TGACAAACTATTTAGACCAAATGATGCGATTTCC
* * * * * * ** *
1996 CGAGCATGGAATGCTTGA-AAAATTAG-TCGAAGGAATGGGTCA-TCTTTAATGCTCCCAA-AAA
65 CGAGCATGGAATG-TTCAGAAAA-TGGCTCAAAGGAATGGAT-AGTCTTGAATACT-TTAAGGAA
*
2057 CCAAAGTTATAAAAGAACTGGTAAATA-TTTGACAAGTTC-TGAAGTTCGTCCAAGAACCAAGAG
126 CCAAAGTTATAAAAGAACTCGTAAA-AGTTTGACAAGTTCGT-AAGTTCGTCCAAGAACCAAGAG
* *
2120 AGAAACAATCCTCATGTAAATAAGTTTT
189 AGAAACAATTCTCACGTAAATAAGTTTT
** ** *
2148 TAATGCAAAGACCAAAAGGTT-TTTACAAAATGACAAACTATTTAGATTAAACGATGCGATTTCC
1 TAATTTAAAGACCAAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * * * ** * * *
2212 CAAGCATGGAATGTT-TGAAAAATTGCACAAAGGAATGGATCTTCTTTAATACTCTAAAGAACCA
65 CGAGCATGGAATGTTCAG-AAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCA
* * * * * * *** *
2276 AAGTTATAATAAAAGAACTTGTGAAATTTTGAAAAGTTTGAAAGTTAAACCATGAACCAAGAGAG
129 AAG-T-T-ATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAG
* * *
2341 AAA-ATATTCTCATGCAAATAAATTTT
191 AAACA-ATTCTCACGTAAATAAGTTTT
* * *
2367 AAATTCAAACACCAAAAGTTGTTTAC
1 TAATTTAAAGACCAAAAGTTGTTTAC
2393 CATATGTTAG
Statistics
Matches: 1746, Mismatches: 357, Indels: 143
0.78 0.16 0.06
Matches are distributed among these distances:
210 115 0.07
211 119 0.07
212 89 0.05
213 5 0.00
214 54 0.03
215 456 0.26
216 746 0.43
217 69 0.04
218 8 0.00
219 85 0.05
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (216 bp):
TAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
GAGCATGGAATGTTCAGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAA
GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACA
ATTCTCACGTAAATAAGTTTT
Found at i:1764 original size:431 final size:431
Alignment explanation
Indices: 1--8774 Score: 7333
Period size: 431 Copynumber: 20.4 Consensus size: 431
* *
1 TAATTCAAAGACCAACAGTTGTTCACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
1 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * * * * *
66 GAGCATGGAATGTTCGGAAAATGGCTCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCGA
66 GAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCA-CCTTTAATACTTTAAGGAACCGA
* * ** * ** *
130 AGTTGTAAAAGAACTCGTAAAAGTTTGACTAG-TCCGTAAGTTCTTCTGAGAACCAAGAGTGAAA
130 AGTTATAAAAGAACT-GTAAAAGTTTGACAAGTTTAG-AAGTTCATCCAAGAACCAAGAGAGAAA
* * * * * *
194 CAATTCTCACGTAAATA-AGTTTTTAATTTAAAGACCAAAATTTGTTTGA-AAAATCACAAACTA
193 CAATTCTCATGTAAATATA-TTTTAAATTCAAAGACCAAAAGTTGTTT-ACAAAATGAAAAACTA
* * * * *
257 TTTAGACCAAAAGATGCGATTTTCGGAGCATGGAATGTTC-AGAAAATGGCTCAAAGGAATGGAT
256 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGAT
* * ** ** * * * * *
321 AGTCTTGAATACTTTGAGGAACCAAAGTTATCGAAGAATTCGTAAAAGTTCGACCAGTTCGTAAG
320 CGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAG
* * * *
386 TTCGTCCTAGAACCACA-AGAGGAACAATTCTCACTTAAATAGGTTTT
385 TTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTT
** * * * * * * *
433 TAATTTGAAGACTAAAAGTTGTTTACATAATGACAAAGTTTTTGGACCGAATGATACGA-TTC-C
1 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * ** * ** * * * * **
496 AGAGCATGGAAAGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAGTACTCTCAGGAACTTA
66 -GAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCACCTTTAATACTTTAAGGAACCGA
* * * * * ** * * * *
561 AGTTACAAAAGAGCTATTAAATGTTCCG-CAAGTACAAAAGTACGTCCAAG-A--AA-AGTGAAA
130 AGTTATAAAAGAACT-GTAAAAGTT-TGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAA
* * * *
621 CAATTCTCACGTAAATA-AGTTTTTATTTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
193 CAATTCTCATGTAAATATA-TTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTAT
* * * * * * * *
685 TTAGACCAAATGATGGGATTTCTCGAGCTTTGAATGTTC-AGAAAATGGCTCAAATGAATGGATA
257 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATC
* ** * * * * *
749 GTCTTGAGTACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACTAGTCCGTAAGT
321 GTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGT
*
814 TCGTCCGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG-TTT
386 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * *
859 TAATTTACAGACCAAAATTTGTTTGCAAAATCACAAACTATTTAGACCAAAAGATGCGATTTC-C
1 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * * * * *
923 GGAGCATGGAATG-TTCAGAAAATGGCTCAAAGGAATGGAT-AGTCTTGAATACTTTGAGGAACC
66 -GAGCATGGAATGTTTGA-AAAATTGCACAAAGGAATGGATCA-CCTTTAATACTTTAAGGAACC
* * * * * * *
986 AAAGTTATTAAAGAACTCGTAAAAGTTCGACCAG-TTCGTAAGTTCGTCCTAGAACCACA-AGAG
128 GAAGTTATAAAAGAACT-GTAAAAGTTTGACAAGTTTAG-AAGTTCATCCAAGAACCA-AGAGAG
* * ** * * * * * *
1049 TAACAATTCTCAAGTAAATAGGTTTTAAATTCGAATACTAAAAGTTGTTTACATAATGACAAAGT
190 AAACAATTCTCATGTAAATATATTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACT
* * * * * *
1114 TTTTGGACCGAATGATACGA-TTCCCGAGCATGGAAAGTTCGAAAAATTGGTCGAAGGAATGGAT
255 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * * * * * * * *
1178 CGTCTTGAGTACTCTCA-G----GAAGTTACAAAAGAGCT-ATTAAATGTTCCG-CAAGTACGGA
320 CGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCA-TAAAAGTT-TGACAAGTTCGAA
* * * * *
1236 AGTTCATCCAAGAACCATGAGAGACACAATTCTCGCATAAATAAGTTTT
383 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
1285 TAATTCAAAGACCAAAAATTGTTTAGAAAATGATAACCTATTTAGACCAAATGATGTC-ATTTCT
1 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCT
* * * *
1349 CGGGTATGGAATGCTTGAAAAATTGCACAAAGGAATGGATCACCTTTAATAGTTTAAGGAACCGA
65 CGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCACCTTTAATACTTTAAGGAACCGA
* * * * * *
1414 CGTTATAAAGGAACTGATAAAAAGTTAGACAACTTTAGAAGTTCGTCCAAGAACCAAGAGTGAAA
130 AGTTATAAAAGAACTG-T-AAAAGTTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAA
* * * * *
1479 CAATTGTCGTGTAAATATA-TTT-ATTTCAAAGACGAAAAGTTGATTACAAAATGAAAAACTATT
193 CAATTCTCATGTAAATATATTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATT
* * * * * *
1542 TAGACCAAACGATGCGATTTCCCAAGCGTAGAATGTTCGGAAAATTGCTCGAAGGAATGGATTGT
258 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGT
* *
1607 CTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGATTGACAAGTTTGAAAGTTC
323 CTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTC
* * *
1672 AG-CCAAGAACAAAGAGAGAAACAGTTCTCACGTATATAAGTTTT
388 -GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * *
1716 TAATTCAAAGAACAAAAGTTGTTTACGAAATGACAAACTATGTAGACCAAATAATACGATTTTTC
1 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * * **** ** * * *
1781 AAGCATTGAATGTTTGAAAAACTGGTTGAAGG-ATAGGATCGGCTTGAATAATTTAAGGAATCGA
66 GAGCATGGAATGTTTGAAAAATTGCACAAAGGAAT-GGATCACCTTTAATACTTTAAGGAACCGA
* * * ** *
1845 TGTTATAAAAGAACACGTAAAATTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAAC
130 AGTTATAAAAGAAC-TGTAAAAGTTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAAC
* * * * *
1910 AATTCTCAGGTAAATA-AGTTTTCAAGTCAAAGACCAAATGTTGTTTACAAAATTAAAAAAC-AT
194 AATTCTCATGTAAATATA-TTTTAAATTCAAAGACCAAAAGTTGTTTACAAAA-TGAAAAACTAT
*** *
1973 TTAGAATGAATGATGCGATTTCCCGAGCATGGAATGCTT-GAAAAATTAG-TCGAAGGAATGGGT
257 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAAATT-GCTCGAAGGAATGGAT
* * * ** * ** **
2036 CATCTTTAATGCTCCCAA-AAACCAAAGTTATAAAAGAACTGGTAAATA-TTTGACAAGTTCTG-
320 CGTCTTGAATACT-TTAAGGAACTGAAGTTATAAAAGAACTCATAAA-AGTTTGACAAGTTC-GA
* *
2098 AAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCATGTAAATAAGTTTT
382 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* ** * *
2148 TAATGCAAAGACCAAAAGGTT-TTTACAAAATGACAAACTATTTAGATTAAACGATGCGATTTCC
1 TAATTCAAAGACCAAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT
* ** * * *
2212 CAAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCTTCTTTAATACTCTAAAGAACCAA
65 CGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCACCTTTAATACTTTAAGGAACCGA
* * * * * *
2277 AGTTATAATAAAAGAACTTGTGAAATTTTGAAAAGTTT-GAAAGTTAAACCATGAACCAAGAGAG
130 AG-T-T-ATAAAAGAAC-TGTAAAAGTTTGACAAGTTTAG-AAGTTCATCCAAGAACCAAGAGAG
* * * *
2341 AAA-ATATTCTCATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTAC--CAT-----A-
190 AAACA-ATTCTCATGTAAATATATTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAAC
* * * * * * * *
2397 T-GTTAGACCGAATGATAC-AATTCCCGAGCATGGAAAGTTCAAAAAATTGGTCGACGGAATGG-
254 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * * * *
2459 -C-TC--G--T-C--T-------T-AAGTTACAAAAGAGC-CATTAAATGTTTCG-TAAGTAC-A
319 TCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCA-TAAAAGTTT-GACAAGTTCGA
* * * *
2504 GAAGTTCGTTCAAAAACCATA-AGAGAGACTATTCTCACGTAAATAAGTTTT
382 -AAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * *
2555 TAATTCAAATACCAAAAATTGTTTAGAAAATGATAACCTATTTAGACCAAATGATGTC-ATTTCT
1 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCT
* * * *
2619 CGGGCATGGAATGCTTGAAAAATTGCACAAAGGAATGGATCACCTTTAAAAGTTTAAGGAACCGA
65 CGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCACCTTTAATACTTTAAGGAACCGA
* *
2684 AGTTATAAAGGAACTGATAAAAAGTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAA
130 AGTTATAAAAGAACTG-T-AAAAGTTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAA
* * * *
2749 CAATTGTCATGTAAATAT-TTTT-AATTCAAAGACGAAAAATTGATTACAAAATGAAAAACTATT
193 CAATTCTCATGTAAATATATTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATT
* * * * * *
2812 TAGACCAAACGATGCGATTTCCCAAGCGTAGAATGTTCGGAAAATTGCTCGAAGGAATGGATCAT
258 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGT
*
2877 CTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGCTTGACAAGTTCGAAAGTTC
323 CTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTC
**********************
2942 AG-CCAAGAA-CAA-AGAG--A-GNNNNNNNNNNNNNNNNNNNNN
388 -GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
***************************** * *
2981 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGATAACCTATTTAGACCAAATGATGTC-ATTTCT
1 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCT
* * * *
3045 CGGGCATGGAATGCTTGAAAAATTGCACAAAGGAATGGATCACCTTTAAAAGTTTAAGGAACCGA
65 CGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCACCTTTAATACTTTAAGGAACCGA
* *
3110 AGTTATAAAGGAACTGATAAAAAGTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAA
130 AGTTATAAAAGAACTG-T-AAAAGTTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAA
* * *** *
3175 CAATTGTCACGTAAATA-AGTTCCCAATTCAAAGACCAAAAGTTGTTTACAAAATTAAAAAAAC-
193 CAATTCTCATGTAAATATA-TTTTAAATTCAAAGACCAAAAGTTGTTTACAAAA-T-GAAAAACT
*** * * * * *
3238 ATTTAGAATGAATGATGTGATTTCTCGAGCCTGGAATGCTC-AAAAACTTAG-TCGAACGAATGG
255 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-TT-GCTCGAAGGAATGG
* ** * * * * * ***
3301 GTCAACTTTAATGCTCTCA-GAAATAGAAGTTATAAAAGAACGGGTAAATA-TTTGACAAGTTCT
318 ATCGTCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCATAAA-AGTTTGACAAGTTC-
* *
3364 G-AAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCATGTAAATAAGTTTT
380 GAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
3415 TAATTCAAAGACCAAAAGGTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
1 TAATTCAAAGACCAAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT
* * *
3479 CGAGCATGGAATGCTTGAAAAATTGCACAAAGGAATGGATCACCTTTAGTAGTTTAAGGAACCGA
65 CGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCACCTTTAATACTTTAAGGAACCGA
* *
3544 AGTTATAAAGGAACTGATAAAAAGTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAA
130 AGTTATAAAAGAACTG-T-AAAAGTTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAA
* * * *
3609 CAATTGTTATGTAAATAT-TTTT-AATTCAAAGACGAAAAGTTGATTACAAAATGAAAAAACTAT
193 CAATTCTCATGTAAATATATTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATG-AAAAACTAT
* * * *
3672 TTAGACCAAATGATGCGATTTCCCAAGCGTAGAATGTTCGGAAAATTGCTCGAAGGAATGGATCG
257 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
*
3737 TCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGCTTGACAAGTTCGAAAGTT
322 TCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTT
*
3802 CAG-CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
387 C-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * *
3847 TAATTCAAAGAGCAAAAGTTGTTTACGAAATGGCAAACTATTTACACCAAATAATGCGATTTTTC
1 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * ** * * * * *
3912 GAGCATTGAATGTTTGAAAAACTGGTCGAAGG-ATAGGATCAGCTTGAATAATTTAAGGAATCGA
66 GAGCATGGAATGTTTGAAAAATTGCACAAAGGAAT-GGATCACCTTTAATACTTTAAGGAACCGA
* *
3976 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAAAACCAAGAGAGAAAC
130 AGTTATAAAAGAACT-GTAAAAGTTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAAC
* * * * *
4041 AATTCTCACGTAAATA-AGTTTTCAAGTCAAAGACCAAAAGTTGTTTACAAGATTAAAAAAC-AT
194 AATTCTCATGTAAATATA-TTTTAAATTCAAAGACCAAAAGTTGTTTACAA-AATGAAAAACTAT
* *** * * * *
4104 TTATAATGATTGATGCGATTTCCCGAGCATAGAATGCTCGAAAAATTAG-TCGAAGGAATGGGTC
257 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT-GCTCGAAGGAATGGATC
* * * * * * * * **
4168 ATCTTTAATGCTCTCAGAAACCGAAGTTATAAAACAACTGGTAAATA-TTTGACAAGTTCTG-AA
321 GTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAA-AGTTTGACAAGTTC-GAAA
* * *
4231 GTTCGTCCAAGAACCAAGAGAGAAACAATCCTCATGTAAAAAAGTTTT
384 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* ** *
4279 TAATTCAAAGACCAAAAGGTT-TTTACAAAATGACAAACTATTTAGATCAAATGATTTGATTTCC
1 TAATTCAAAGACCAAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT
* * ** * *
4343 CGAGCATGGAATGTTTGAAAAATTGCACAAAGAAAAGGATCTTCTTTAATACTCTCAA-GAACCA
65 CGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCACCTTTAATACT-TTAAGGAACCG
* * * * *
4407 AAGTTATAATAAAAGAACTTGTGACATTTTGAAAAGTTT-GAAAGTTAATCCAAGAACCAAGAGA
129 AAG-T-T-ATAAAAGAAC-TGTAAAAGTTTGACAAGTTTAG-AAGTTCATCCAAGAACCAAGAGA
* * * *
4471 GAAA-ATATTCTCATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTAC--CAT-----A
189 GAAACA-ATTCTCATGTAAATATATTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAA
* * * * * *
4528 -T-GTTAGACCGAATGATACGA-TTCTCGAGCATGGAAAGTTCGAAAAATTGGTCGAAGGAATGG
253 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* * * * * * * * *
4590 CTCGTCTTGAATA-TTCTCAGGAACTTAAGTTACAAAAGAGCT-ATTAAATGTTCCG-TAAGTAC
318 ATCGTCTTGAATACTT-TAAGGAACTGAAGTTATAAAAGAACTCA-TAAAAGTT-TGACAAGT-T
* * * *
4652 CG-AAGTTCGTCCAAAAACCATGAGAGAGACAATTCTCATGTAAATAAGTTTT
379 CGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * *
4704 TAATTCAAAGACCAAAAATTGTTTAGAAAATGATAACCTATTTAGGCCAAATGATGTC-ATTTCT
1 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCT
* * * ** *
4768 CGAGCATGGAAAGCTTGAAAAATTGCACAAAAGAATGGATCACAGTTAATAGTTTAAGGAACCGA
65 CGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCACCTTTAATACTTTAAGGAACCGA
* *
4833 AGTTATAAAAGAACTGATAAAAAGTTTGACAAGTTTAGAAGTTCGTCCAAGAGCCAAGAGAGAAA
130 AGTTATAAAAGAACTG-T-AAAAGTTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAA
* * * *
4898 CAATTTTCATGTAAATAT-TTTT-AATTCAAAGACGAAAAATTGATTACAAAATGAAAAACTATT
193 CAATTCTCATGTAAATATATTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATT
* * * *
4961 TAGACCAAACGATGAGATTTCCCAAGCATAGAATGTTCTG-AAAATTGCTCGAAGGAATGGATCG
258 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAAATTGCTCGAAGGAATGGATCG
* * *
5025 TCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTTATAAAAGCTTGACAAGTTTGAAAGTT
322 TCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTT
* *
5090 CAG-CCAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGTTTT
387 C-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* ** * * * * *
5135 TAATTCAAAGAGCAAAAGTTGTTTAGGAATTTACAAACTATTTAGACCAAATAATGAGATTTTTC
1 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * * ** * ** * * *
5200 GAGCATTGAATGTTCGAAAAACTGGTCGAAGG-ATAGGATCGGCTTGAATAATTTAAGGAACTGA
66 GAGCATGGAATGTTTGAAAAATTGCACAAAGGAAT-GGATCACCTTTAATACTTTAAGGAACCGA
** * ** * * *
5264 AGTTATAAAAGAACTCGTAAAAAATTGAAAAGTTCGGAAGTTCAACCAAAAACCAAGAGAGAAAT
130 AGTTATAAAAGAACT-GTAAAAGTTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAAC
* * * *
5329 AATTCTCACGTAAATA-AGTTTTCAATTCAAAGACCAAAAGTTGTTTACGAAATGACAAACTATT
194 AATTCTCATGTAAATATA-TTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATT
* * * * * * *
5393 TAGACCAAATAATGCGATTTCCCGAGCCTGGAATGCTCGAAAAA-T--T-AAAAGAATGGGTCAT
258 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGT
* * * * * * **
5454 CTTTAATGCTCTCAGAAACCGAAGTTATAAAAGAACTGGTAAATA-TTTGACAAGTTCTG-AAGT
323 CTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAA-AGTTTGACAAGTTC-GAAAGT
* *
5517 TCGTCCAAGAACCAAGAGAGAAACAATCCTCATGTAAATAAGTTTT
386 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
5563 CAATTCAAAGACCAAAAGGAT-TTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCC
1 TAATTCAAAGACCAAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT
* * *
5627 CGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCGCCTTTAATACTCTCAA-GAACCA
65 CGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCACCTTTAATACT-TTAAGGAACCG
** * *
5691 AAGTTATAATAAAAGAACTTGTAAATTTTTGAAAAGTTT-GAAAGTTAATCCAAGAACCAAGAGA
129 AAG-T-T-ATAAAAGAAC-TGTAAAAGTTTGACAAGTTTAG-AAGTTCATCCAAGAACCAAGAGA
* * * * * * *
5755 GAAA-ATATTCTCATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTGCCATATGACAAA
189 GAAACA-ATTCTCATGTAAATATATTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAA
** * * * * * * *
5819 CTATTTTTACCAAATGATGCAATTTTCCAAGAATGGAATGTTCGAAAAATTGGTTGAAGGAATGC
253 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* * ** *** ** * * *
5884 ATCTTCTTAAATACTATT-AGGAACCAAAGTTATAAAAGAACTTGCAAATTTTTTAAAAGTT-TA
318 ATCGTCTTGAATACT-TTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGA
* * * *
5947 GAAGTTCATCCAAGAACTAGGAGAGAAATAATTCTCACGTAAATAAGTTTT
382 -AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
5998 CAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
1 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * * * * * * *
6063 GAGCATGGAATGTTTGGAAAGTGGCTCAAATGAATGGAT-AGTCTTGAATACTTTAAGGAACCAA
66 GAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCA-CCTTTAATACTTTAAGGAACCGA
* * * ** * *
6127 AGTTGTAAAAG-ACTCGTAAAAGTTTGACTAG-TTCGTAAGTTCGCCCGAGAACAAAGAGAGAAA
130 AGTTATAAAAGAACT-GTAAAAGTTTGACAAGTTTAG-AAGTTCATCCAAGAACCAAGAGAGAAA
* ** * * * *
6190 CAATTCTCACGTAAATA-AGTTTTTCATTTAAAGACCAAAATTTGTTTACAAAATCACAAACTAT
193 CAATTCTCATGTAAATATA-TTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTAT
* ** * * *
6254 TTAGACCAAAAGATGCGATTTCTGGAGCATGGAATGTTC-AGAAAATGGCTCAAAGGAATGGATA
257 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATC
* ** * * * * *
6318 GTCTTGAATACTTTGAGGAACCAAAGATATAAAAGAAGTCGA-AAAAGTTCGACTAGTTCGTAAG
321 GTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTC-ATAAAAGTTTGACAAGTTCGAAAG
* * * *
6382 TTCATCCGAGAA-CAACAAGAGAAACAATTCTCACGTAAATAGGTTTT
385 TTCGTCCAAGAACCAA-GAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * * * *
6429 TGAATTCGAAGACTAAATGTTGTTTACATAATGATAAAGTTTTTAGACCGAATGATGCGATTT-T
1 T-AATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT
* * * ** * *
6493 CGGAGCAAGGAAAGTTCGAAAAATTGGTCGAAA-GAATGGAT-AGTCTTGAATACTTTAAGGAAC
65 C-GAGCATGGAATGTTTGAAAAATTGCAC-AAAGGAATGGATCA-CCTTTAATACTTTAAGGAAC
* * * * * * *
6556 CAAAGTTATAAAAAAACTCGTAAAAGTTTGACTAGTTCATAAGTTCATCCTAGAACCACA-AGTG
127 CGAAGTTATAAAAGAACT-GTAAAAGTTTGACAAGTTTAGAAGTTCATCCAAGAACCA-AGAGAG
* * *
6620 AAACAATTCTCACT-TAAA-ATAGGTTATT-AATT-AGAAGACTAAAAGTTGTTTACATAATGAC
190 AAACAATTCTCA-TGTAAATATA--TT-TTAAATTCA-AAGACCAAAAGTTGTTTACAAAATGAA
* * * * * * *
6681 AAAGTTTTTAGACCGAATGATACGA-TTCCCGAGCATGGAAAGTTTGAAAAATTGGTCGAAGGAA
250 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * * * * * * *
6745 TGGATTGTCTTGAATACTCTCAGGAACTTAAGTTACAAAAGAGCT-ATTAAATGTTCCG-CTAGT
315 TGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCA-TAAAAGTT-TGACAAGT
* * * *
6808 ACGGAAGTTCGTCCAAAAACCATGAGAGAAACAATTCTCACGTAAATAAGTTTT
378 TCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * *
6862 TAATTCAAAGACCAAAAATTGTTTAGAAAATGATAACCTAGTTAGACCAAATGATGTC-ATTTCT
1 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCT
* * * *
6926 CGAGCATGGAATGCTTGAAAAATTGCACAAAGGAGTGGATCACCTTTAATAGTTTAAGGAACCAA
65 CGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCACCTTTAATACTTTAAGGAACCGA
* **
6991 AGTTATAAAGGAACTGATAAAAAGTTTGACAAGTTTAGAAGTTTGTCCAAGAACCAAGAGAGAAA
130 AGTTATAAAAGAACTG-T-AAAAGTTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAA
* * *
7056 CAATTGTCATGTAAATAT-TTTT-AATTCAAAGACGAAAAGTTGATTACAAAATGAAAAACTATT
193 CAATTCTCATGTAAATATATTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATT
* * * * *
7119 TAGACCAAACGATGCGATTTCCCAAGCGTAGAATGTTC-AGAAAATTGCCCGAAGGAATGGATCG
258 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCG
* * *
7183 TCTTGAATACTTTAAGGAACTAAAGTTATAAAAGAACTCATAAAAGCTTGACAAGTTCGACAGTT
322 TCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTT
* * * *
7248 CAG-CAAAGAACAAAGAGAGAAATAGTTCTCACGTAAATAAGTTTT
387 C-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * *
7293 TAATTCAAAGAGCAAAACTTGTTTACGAAATGGCAAACTATTTAGACCAAATAATGCGATTTTTC
1 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* ** ** * ** * *
7358 GAGCATTGAATGTTCAAAAAATTGGTCGAAGG-ATAGGATCGGCTTGAATAATTTAAGGAACCGA
66 GAGCATGGAATGTTTGAAAAATTGCACAAAGGAAT-GGATCACCTTTAATACTTTAAGGAACCGA
* * * *
7422 AGTTATAAAATAACTCGTAAAAGTTTGACAAG-TTCGAAAGTTCATCCAAAAACAAAGAGAGAAA
130 AGTTATAAAAGAACT-GTAAAAGTTTGACAAGTTTAG-AAGTTCATCCAAGAACCAAGAGAGAAA
* * *
7486 CAATTCTCAAGTAAATA-AGTTTCCAAA-TCAAAGACCAAAAGTTGTTTACAAAATTAAAAAAAC
193 CAATTCTCATGTAAATATA-TTT-TAAATTCAAAGACCAAAAGTTGTTTACAAAA-T-GAAAAAC
*** * * * * ** *
7549 -ATTTAGAATGAATGATGTGATTTCTCGAGCCTGGAATGCTAAAAAAATTAG-TCGAAGGAATAG
254 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT-GCTCGAAGGAATGG
* * * * ** * * **
7612 TTCATCTTTAATGCTCCCAA-AAACCGAAGTTATAAAAGAACTGGTAAATA-TTTGACAAGTTCT
318 ATCGTCTTGAATACT-TTAAGGAACTGAAGTTATAAAAGAACTCATAAA-AGTTTGACAAGTTC-
* * * *
7675 G-AAGTTTGTCCAAGAACCAAGAGAGAAACAATCCTCATGTTAATAAGTTTT
380 GAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
7726 TAATTCAAAGACCAAAAGGTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
1 TAATTCAAAGACCAAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT
* * *
7790 CGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCGCCTTTAATACTCTCAA-GAACCA
65 CGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCACCTTTAATACT-TTAAGGAACCG
** *
7854 AAGTTATAATAAAAGAACTTGTAAATTTTTGTA-AAGTTT-GAAAGTTAATCCAAGAACCAAGAG
129 AAG-T-T-ATAAAAGAAC-TGTAAAAGTTTG-ACAAGTTTAG-AAGTTCATCCAAGAACCAAGAG
* * * * * * *
7917 AGAAA-ATATTCTCATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCATATTACAA
188 AGAAACA-ATTCTCATGTAAATATATTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAA
* * * * * *
7981 ACTATTTTGACCAAATGATGCAATTTTCCGAGAATGGAATGTTCGAAAAATTGGTTGAAGGAATG
252 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * * ** ** ** * *
8046 CATCTTCTTAAATACTATT-AGGAACAAAAGTTATAAAAGAACTTGTAAATTTTTGAAAAGTTTG
317 GATCGTCTTGAATACT-TTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCG
* * *** *
8110 GAAGTTCATCCAAGAACTGGGAGAGAAACAATTCTAACGTAAATAAGTTTT
381 AAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
8161 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTC
1 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * * * * * * * * *
8226 GAGCATGGAATGTTCGGAAAATGGCTCAAATGAGTGGAT-A-GTATTGAGTACTTTGAGGAACCA
66 GAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCACCT-TT-AATACTTTAAGGAACCG
* * *
8289 AAGTTATTAAAA-AACTCGTAAAAGTTCGACCAA--TTCGTAAGTTCATCCTAGAACCACA-AGA
129 AAGTTA-TAAAAGAACT-GTAAAAGTTTGA-CAAGTTTAG-AAGTTCATCCAAGAACCA-AGAGA
* ** * * * * *
8350 GAAACAATTCTCACGTAAATAGGTTTTTAATTCGAAGACTAAAAGTTGTTTACATAATGAAAAAG
189 GAAACAATTCTCATGTAAATATATTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAAC
* * * * *
8415 TTTTTAGACCGAATGATACG-TTTCCCGAGCATGGAAAGTTCGAAAAATTGGTCGAAGGAATGGA
254 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * * * * * * * *
8479 TCGTCTTGAATACTCTCAGGAACTTAAGTTACAAAAGAGCT-ATTAAATGTTCCG-CTAGTAC-A
319 TCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCA-TAAAAGTT-TGACAAGTTCGA
* **
8541 GAAGTTCGTCCAAAAACCATTAGAGAAACAATTCTCACGTAAATAAGTTTT
382 -AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
8592 TAATTCAAAGACCAAAAATTGTTTAGAAAATGATAACCTATTTAGACCAAATGATGTC-ATTTCT
1 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCT
* * *
8656 CGGGCATGGAATGTTTGAAAAATTGCACAAAGGAGTGGATCACCTTTAATAGTTTAAGGAACCGA
65 CGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCACCTTTAATACTTTAAGGAACCGA
* * *
8721 AGTTATAAAGGAACTGATAAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAAC
130 AGTTATAAAAGAACTG-T-AAAAGTTTGACAAGTTTAGAAGTTCATCCAAGAAC
Statistics
Matches: 6702, Mismatches: 1330, Indels: 620
0.77 0.15 0.07
Matches are distributed among these distances:
403 23 0.00
404 14 0.00
405 53 0.01
406 5 0.00
407 173 0.03
408 3 0.00
410 1 0.00
411 1 0.00
412 13 0.00
413 35 0.01
415 1 0.00
416 2 0.00
417 1 0.00
418 2 0.00
420 1 0.00
421 24 0.00
422 17 0.00
423 55 0.01
424 13 0.00
425 370 0.06
426 436 0.07
427 358 0.05
428 240 0.04
429 124 0.02
430 314 0.05
431 1551 0.23
432 1307 0.20
433 559 0.08
434 281 0.04
435 630 0.09
436 90 0.01
437 5 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.27
Consensus pattern (431 bp):
TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
GAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCACCTTTAATACTTTAAGGAACCGAA
GTTATAAAAGAACTGTAAAAGTTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAA
TTCTCATGTAAATATATTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAG
ACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTT
GAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTC
CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
Found at i:3730 original size:216 final size:216
Alignment explanation
Indices: 2503--8774 Score: 5210
Period size: 216 Copynumber: 29.1 Consensus size: 216
2493 TCGTAAGTAC
* * * * *
2503 AGAAGTTCGTTCAAAAACCATA-AGAGAGACTATTCTCACGTAAATAAGTTTTTAATTCAAATAC
1 AGAAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * * *
2567 CAAAAATTGTTTAGAAAATGATAACCTATTTAGACCAAATGATGTC-ATTTCTCGGGCATGGAAT
65 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCCCGAGCATGGAAT
* * * * * *
2631 GCTT-GAAAAATTGCACAAAGGAATGGATCACCTTTAAAAGTTTAAGGAACCGAAGTTATAAAGG
129 G-TTCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAG
2695 AACTGATAAAAAGTTTGACAAGTTT
193 AACTGAT-AAAAGTTTGACAAGTTT
* * *
2720 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGTCATGTAAAT-A-TTTTTAATTCAAAGACG
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * * * *
2783 AAAAATTGATTACAAAATGAAAAACTATTTAGACCAAACGATGCGATTTCCCAAGCGTAGAATGT
66 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * *
2848 TCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAAC
131 TCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAGAAC
* *
2913 TCATAAAAGCTTGACAAG-TT
196 TGATAAAAGTTTGACAAGTTT
* *********************************
2933 CGAAAGTTCAG-CCAAGAA-CAA-AGAG--A-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 AG-AAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
****************** * * * *
2992 NNNNNNNNNNNNNNNNNNATGATAACCTATTTAGACCAAATGATGTC-ATTTCTCGGGCATGGAA
64 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCCCGAGCATGGAA
* * * * * *
3056 TGCTT-GAAAAATTGCACAAAGGAATGGATCACCTTTAAAAGTTTAAGGAACCGAAGTTATAAAG
128 TG-TTCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAA
3120 GAACTGATAAAAAGTTTGACAAGTTT
192 GAACTGAT-AAAAGTTTGACAAGTTT
* ***
3146 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGTCACGTAAATAAGTTCCCAATTCAAAGACC
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * *** * * *
3211 AAAAGTTGTTTACAAAATTAAAAAAAC-ATTTAGAATGAATGATGTGATTTCTCGAGCCTGGAAT
66 AAAAGTTGTTTACAAAA-T-GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * * * * * * * **
3275 GCTC-AAAAACTTAG-TCGAACGAATGGGTCAACTTTAATGCTCTCAGAAATAGAAGTTATAAAA
129 GTTCGAAAAA-TT-GCTCGAAGGAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAA
* *
3338 GAACGGGTAAATA-TTTGACAAGTTCT
192 GAACTGATAAA-AGTTTGACAAGTT-T
* *
3364 -GAAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCATGTAAATAAGTTTTTAATTCAAAGACC
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
3428 AAAAGGTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
66 AAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * * * *
3492 CTT-GAAAAATTGCACAAAGGAATGGATCACCTTTAGTAGTTTAAGGAACCGAAGTTATAAAGGA
130 -TTCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAGA
3556 ACTGATAAAAAGTTTGACAAGTTT
194 ACTGAT-AAAAGTTTGACAAGTTT
* * * *
3580 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGTTATGTAAAT-A-TTTTTAATTCAAAGACG
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * *
3643 AAAAGTTGATTACAAAATGAAAAAACTATTTAGACCAAATGATGCGATTTCCCAAGCGTAGAATG
66 AAAAGTTGTTTACAAAATG-ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * *
3708 TTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAA
130 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAGAA
* *
3773 CTCATAAAAGCTTGACAAG-TT
195 CTGATAAAAGTTTGACAAGTTT
* *
3794 CGAAAGTTCAG-CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
1 AG-AAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * * * ** *
3858 GCAAAAGTTGTTTACGAAATGGCAAACTATTTACACCAAATAATGCGATTTTTCGAGCATTGAAT
64 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * * * * * *
3923 GTTTGAAAAACTGGTCGAAGG-ATAGGATCAGCTTGAATAATTTAAGGAATCGAAGTTATAAAAG
129 GTTCGAAAAATTGCTCGAAGGAAT-GGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAG
*
3987 AACTCG-TAAAAGTTTGACAAGTTC
193 AACT-GATAAAAGTTTGACAAGTTT
* * * *
4011 AGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCAAGTCAAAGACC
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * *** * *
4076 AAAAGTTGTTTACAAGATTAAAAAAC-ATTTATAATGATTGATGCGATTTCCCGAGCATAGAATG
66 AAAAGTTGTTTACAA-AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * * * * *
4140 CTCGAAAAATTAG-TCGAAGGAATGGGTCATCTTTAATGCTCTCAGAAACCGAAGTTATAAAACA
130 TTCGAAAAATT-GCTCGAAGGAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAGA
*
4204 ACTGGTAAATA-TTTGACAAGTTCT
194 ACTGATAAA-AGTTTGACAAGTT-T
* * *
4228 -GAAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCATGTAAAAAAGTTTTTAATTCAAAGACC
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* **
4292 AAAAGGTT-TTTACAAAATGACAAACTATTTAGATCAAATGATTTGATTTCCCGAGCATGGAATG
66 AAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * * * * * *
4356 TTTGAAAAATTGCACAAAGAAAAGGATCTTCTTTAATACTCTCAA-GAACCAAAGTTATAATAAA
130 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACT-TTAAGGAACCGAAG-T-T-ATAAA
* * * *
4420 AGAACTTG-TGACATTTTGAAAAGTTT
191 AGAAC-TGATAAAAGTTTGACAAGTTT
** * * * * *
4446 -GAAAGTTAATCCAAGAACCAAGAGAGAAA-ATATTCTCATGCAAATAAATTTTAAATTCAAACA
1 AG-AAGTTCGTCCAAGAACCAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * *
4509 CCAAAAGTTGTTTAC-------C--A-TATGTTAGACCGAATGATACGA-TTCTCGAGCATGGAA
64 CCAAAAGTTGTTTACAAAATGACAAACTAT-TTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * * * * ** *
4563 AGTTCGAAAAATTGGTCGAAGGAATGGCTCGTCTTGAATA-TTCTCAGGAACTTAAGTTACAAAA
128 TGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACTT-TAAGGAACCGAAGTTATAAAA
* * * * **
4627 GAGCT-ATTAAATGTTCCG-TAAGTAC
192 GAACTGA-TAAAAGTT-TGACAAGTTT
* * * * *
4652 CGAAGTTCGTCCAAAAACCATGAGAGAGACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACC
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * * * *
4717 AAAAATTGTTTAGAAAATGATAACCTATTTAGGCCAAATGATGTC-ATTTCTCGAGCATGGAAAG
66 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCCCGAGCATGGAATG
* * * * *
4781 CTT-GAAAAATTGCACAAAAGAATGGATCA-CAGTTAATAGTTTAAGGAACCGAAGTTATAAAAG
130 -TTCGAAAAATTGCTCGAAGGAATGGATCATC-TTTAATACTTTAAGGAACCGAAGTTATAAAAG
4844 AACTGATAAAAAGTTTGACAAGTTT
193 AACTGAT-AAAAGTTTGACAAGTTT
* * * *
4869 AGAAGTTCGTCCAAGAGCCAAGAGAGAAACAATTTTCATGTAAAT-A-TTTTTAATTCAAAGACG
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * * * *
4932 AAAAATTGATTACAAAATGAAAAACTATTTAGACCAAACGATGAGATTTCCCAAGCATAGAATGT
66 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * *
4997 TCTG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAA
131 TC-GAAAAATTGCTCGAAGGAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAGAA
* *
5061 CTTATAAAAGCTTGACAAGTTT
195 CTGATAAAAGTTTGACAAGTTT
* *
5083 -GAAAGTTCAG-CCAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGA
1 AG-AAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* ** * * * * ** *
5146 GCAAAAGTTGTTTAGGAATTTACAAACTATTTAGACCAAATAATGAGATTTTTCGAGCATTGAAT
64 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * ** * * *
5211 GTTCGAAAAACTGGTCGAAGG-ATAGGATCGGCTTGAATAATTTAAGGAACTGAAGTTATAAAAG
129 GTTCGAAAAATTGCTCGAAGGAAT-GGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAG
** * *
5275 AACTCG-TAAAAAATTGAAAAGTTC
193 AACT-GATAAAAGTTTGACAAGTTT
* ** * * *
5299 GGAAGTTCAACCAAAAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTCAATTCAAAGACC
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * *
5364 AAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATAATGCGATTTCCCGAGCCTGGAATGC
66 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * *
5429 TCGAAAAA-T--T-AAAAGAATGGGTCATCTTTAATGCTCTCAGAAACCGAAGTTATAAAAGAAC
131 TCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAGAAC
*
5490 TGGTAAATA-TTTGACAAGTTCT
196 TGATAAA-AGTTTGACAAGTT-T
* * *
5512 -GAAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCATGTAAATAAGTTTTCAATTCAAAGACC
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* *
5576 AAAAGGAT-TTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATG
66 AAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * ** * *
5640 TTTGAAAAATTGCACAAAGGAATGGATCGCCTTTAATACTCTCAA-GAACCAAAGTTATAATAAA
130 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACT-TTAAGGAACCGAAG-T-T-ATAAA
** *
5704 AGAACTTG-TAAATTTTTGAAAAGTTT
191 AGAAC-TGATAAAAGTTTGACAAGTTT
** * * * * *
5730 -GAAAGTTAATCCAAGAACCAAGAGAGAAA-ATATTCTCATGCAAATAAATTTTAAATTCAAACA
1 AG-AAGTTCGTCCAAGAACCAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * ** * * * *
5793 CCAAAAGTTGTTTGCCATATGACAAACTATTTTTACCAAATGATGCAATTTTCCAAGAATGGAAT
64 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * * * * *
5858 GTTCGAAAAATTGGTTGAAGGAATGCATCTTCTTAAATACTATT-AGGAACCAAAGTTATAAAAG
129 GTTCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACT-TTAAGGAACCGAAGTTATAAAAG
* ** * *
5922 AACTTG-CAAATTTTTTAAAAGTTT
193 AAC-TGATAAAAGTTTGACAAGTTT
* * * * *
5946 AGAAGTTCATCCAAGAACTAGGAGAGAAATAATTCTCACGTAAATAAGTTTTCAATTCAAAGACC
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
*
6011 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT
66 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * * * *
6076 TTGGAAAGTGGCTCAAATGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTGTAAAAG-A
131 TCGAAAAATTGCTCGAAGGAATGGATCA-TCTTTAATACTTTAAGGAACCGAAGTTATAAAAGAA
*
6139 CTCG-TAAAAGTTTGACTAG-TT
195 CT-GATAAAAGTTTGACAAGTTT
* * * * * *
6160 CGTAAGTTCGCCCGAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCATTTAAAGAC
1 AG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * **
6225 CAAAATTTGTTTACAAAATCACAAACTATTTAGACCAAAAGATGCGATTTCTGGAGCATGGAATG
65 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * * * *
6290 TTC-AGAAAATGGCTCAAAGGAATGGAT-AGTCTTGAATACTTTGAGGAACCAAAGATATAAAAG
130 TTCGA-AAAATTGCTCGAAGGAATGGATCA-TCTTTAATACTTTAAGGAACCGAAGTTATAAAAG
* * *
6353 AAGTCGA-AAAAGTTCGACTAG-TT
193 AACT-GATAAAAGTTTGACAAGTTT
* * * * * *
6376 CGTAAGTTCATCCGAGAA-CAACAAGAGAAACAATTCTCACGTAAATAGGTTTTTGAATTCGAAG
1 AG-AAGTTCGTCCAAGAACCAA-GAGAGAAACAATTCTCACGTAAATAAGTTTTT-AATTCAAAG
* * * * * * * * * *
6440 ACTAAATGTTGTTTACATAATGATAAAGTTTTTAGACCGAATGATGCGATTTTCGGAGCAAGGAA
63 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * * *
6505 AGTTCGAAAAATTGGTCGAAAGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
128 TGTTCGAAAAATTGCTCGAAGGAATGGATCA-TCTTTAATACTTTAAGGAACCGAAGTTATAAAA
* * *
6569 AAACTCG-TAAAAGTTTGACTAGTTC
192 GAACT-GATAAAAGTTTGACAAGTTT
* * * * * * *
6594 ATAAGTTCATCCTAGAACCACA-AGTGAAACAATTCTCACTTAAAATAGGTTATTAATT-AGAAG
1 AGAAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGT-AAATAAGTTTTTAATTCA-AAG
* * * * * *
6657 ACTAAAAGTTGTTTACATAATGACAAAGTTTTTAGACCGAATGATACGA-TTCCCGAGCATGGAA
63 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * ** * * * ** *
6721 AGTTTGAAAAATTGGTCGAAGGAATGGATTGTCTTGAATACTCTCAGGAACTTAAGTTACAAAAG
128 TGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAG
* * * * **
6786 AGCT-ATTAAATGTTCCG-CTAGTAC
193 AACTGA-TAAAAGTT-TGACAAGTTT
* * *
6810 GGAAGTTCGTCCAAAAACCATGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * * *
6875 AAAAATTGTTTAGAAAATGATAACCTAGTTAGACCAAATGATGTC-ATTTCTCGAGCATGGAATG
66 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCCCGAGCATGGAATG
* * * * * * *
6939 CTT-GAAAAATTGCACAAAGGAGTGGATCACCTTTAATAGTTTAAGGAACCAAAGTTATAAAGGA
130 -TTCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAGA
7003 ACTGATAAAAAGTTTGACAAGTTT
194 ACTGAT-AAAAGTTTGACAAGTTT
* * * *
7027 AGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTGTCATGTAAAT-A-TTTTTAATTCAAAGACG
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * * *
7090 AAAAGTTGATTACAAAATGAAAAACTATTTAGACCAAACGATGCGATTTCCCAAGCGTAGAATGT
66 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * **
7155 TC-AGAAAATTGCCCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTAAAGTTATAAAAGAA
131 TCGA-AAAATTGCTCGAAGGAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAGAA
* *
7219 CTCATAAAAGCTTGACAAG-TT
195 CTGATAAAAGTTTGACAAGTTT
* * * * *
7240 CGACAGTTCAG-CAAAGAACAAAGAGAGAAATAGTTCTCACGTAAATAAGTTTTTAATTCAAAGA
1 AGA-AGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * * * ** *
7304 GCAAAACTTGTTTACGAAATGGCAAACTATTTAGACCAAATAATGCGATTTTTCGAGCATTGAAT
64 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * ** * * *
7369 GTTCAAAAAATTGGTCGAAGG-ATAGGATCGGCTTGAATAATTTAAGGAACCGAAGTTATAAAAT
129 GTTCGAAAAATTGCTCGAAGGAAT-GGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAG
7433 AACTCG-TAAAAGTTTGACAAG-TT
193 AACT-GATAAAAGTTTGACAAGTTT
* * * * * ** *
7456 CGAAAGTTCATCCAAAAACAAAGAGAGAAACAATTCTCAAGTAAATAAGTTTCCAAATCAAAGAC
1 AG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * *** * * *
7521 CAAAAGTTGTTTACAAAATTAAAAAAAC-ATTTAGAATGAATGATGTGATTTCTCGAGCCTGGAA
65 CAAAAGTTGTTTACAAAA-T-GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* ** * * * ** *
7585 TGCTAAAAAAATTAG-TCGAAGGAATAGTTCATCTTTAATGCTCCCAA-AAACCGAAGTTATAAA
128 TGTTCGAAAAATT-GCTCGAAGGAATGGATCATCTTTAATACT-TTAAGGAACCGAAGTTATAAA
*
7648 AGAACTGGTAAATA-TTTGACAAGTTCT
191 AGAACTGATAAA-AGTTTGACAAGTT-T
* * * *
7675 -GAAGTTTGTCCAAGAACCAAGAGAGAAACAATCCTCATGTTAATAAGTTTTTAATTCAAAGACC
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
7739 AAAAGGTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
66 AAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * ** * *
7803 TTTGAAAAATTGCACAAAGGAATGGATCGCCTTTAATACTCTCAA-GAACCAAAGTTATAATAAA
130 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACT-TTAAGGAACCGAAG-T-T-ATAAA
**
7867 AGAACTTG-TAAATTTTTGTA-AAGTTT
191 AGAAC-TGATAAAAGTTTG-ACAAGTTT
** * * * * *
7893 -GAAAGTTAATCCAAGAACCAAGAGAGAAA-ATATTCTCATGCAAATAAATTTTAAATTCAAACA
1 AG-AAGTTCGTCCAAGAACCAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * * * * *
7956 CCAAAAGTTGTTTACCATATTACAAACTATTTTGACCAAATGATGCAATTTTCCGAGAATGGAAT
64 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * * * * **
8021 GTTCGAAAAATTGGTTGAAGGAATGCATCTTCTTAAATACTATT-AGGAACAAAAGTTATAAAAG
129 GTTCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACT-TTAAGGAACCGAAGTTATAAAAG
** *
8085 AACTTG-TAAATTTTTGAAAAGTTT
193 AAC-TGATAAAAGTTTGACAAGTTT
* * *** *
8109 GGAAGTTCATCCAAGAACTGGGAGAGAAACAATTCTAACGTAAATAAGTTTTTAATTCAAAGACC
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* *
8174 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATGGAATGT
66 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
* * * * * * * * * *
8239 TCGGAAAATGGCTCAAATGAGTGGAT-AGTATTGAGTACTTTGAGGAACCAAAGTTATTAAAA-A
131 TCGAAAAATTGCTCGAAGGAATGGATCA-TCTTTAATACTTTAAGGAACCGAAGTTA-TAAAAGA
*
8302 ACTCG-TAAAAGTTCGACCAA--TT
194 ACT-GATAAAAGTTTGA-CAAGTTT
* * * * *
8324 CGTAAGTTCATCCTAGAACCACA-AGAGAAACAATTCTCACGTAAATAGGTTTTTAATTCGAAGA
1 AG-AAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * * * * * *
8388 CTAAAAGTTGTTTACATAATGAAAAAGTTTTTAGACCGAATGATACG-TTTCCCGAGCATGGAAA
64 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * * * * ** *
8452 GTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACTTAAGTTACAAAAGA
129 GTTCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAGA
* * * * **
8517 GCT-ATTAAATGTTCCG-CTAGTAC
194 ACTGA-TAAAAGTT-TGACAAGTTT
* **
8540 AGAAGTTCGTCCAAAAACCATTAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
1 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * * *
8605 AAAAATTGTTTAGAAAATGATAACCTATTTAGACCAAATGATGTC-ATTTCTCGGGCATGGAATG
66 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCCCGAGCATGGAATG
* * * * * * *
8669 TTTGAAAAATTGCACAAAGGAGTGGATCACCTTTAATAGTTTAAGGAACCGAAGTTATAAAGGAA
130 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAGAA
*
8734 CTGATAAAAAGTTTGACAAGTTC
195 CTGAT-AAAAGTTTGACAAGTTT
8757 AGAAGTTCGTCCAAGAAC
1 AGAAGTTCGTCCAAGAAC
Statistics
Matches: 4875, Mismatches: 973, Indels: 414
0.78 0.16 0.07
Matches are distributed among these distances:
205 1 0.00
206 79 0.02
207 5 0.00
208 3 0.00
209 54 0.01
210 16 0.00
211 97 0.02
212 205 0.04
213 24 0.00
214 153 0.03
215 901 0.18
216 2002 0.41
217 765 0.16
218 135 0.03
219 428 0.09
220 7 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Consensus pattern (216 bp):
AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
TCGAAAAATTGCTCGAAGGAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAAAAGAAC
TGATAAAAGTTTGACAAGTTT
Done.