Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013034.1 Kokia drynarioides strain JFW-HI SEQ_128052, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13329
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1674 original size:15 final size:14

Alignment explanation


    Indices: 1654--1684  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       1644 TTCTCACAAT

                           
       1654 AAGGGAGTTATAGAC
          1 AAGGGAGTTATA-AC

                          
       1669 AAGGGAGTTATAAC
          1 AAGGGAGTTATAAC

              
       1683 AA
          1 AA

       1685 CAATCAGCAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    4  0.25
  15   12  0.75

ACGTcount: A:0.45, C:0.06, G:0.29, T:0.19


Consensus pattern (14 bp):   
AAGGGAGTTATAAC

Found at i:7857 original size:21 final size:21

Alignment explanation


    Indices: 7833--7874  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       7823 GCAACCTGAG

                    *     *      
       7833 GAGAAGAAGGAAAATGAAGAA
          1 GAGAAGAAAGAAAAAGAAGAA

                                 
       7854 GAGAAGAAAGAAAAAGAAGAA
          1 GAGAAGAAAGAAAAAGAAGAA

       7875 AAAGAGAAGG


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.67, C:0.00, G:0.31, T:0.02


Consensus pattern (21 bp):   
GAGAAGAAAGAAAAAGAAGAA
Done.