genome.fa.s13036.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013036.1 Kokia drynarioides strain JFW-HI SEQ_128054, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76120

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3857--3899	12	3.6	12	81	12	61	0	16	2	81	0.79
6905--7054	80	1.9	80	97	0	282	40	3	7	49	1.47
13512--13555	20	2.1	21	84	12	56	61	2	0	36	1.09
15018--15232	105	2.0	105	92	0	358	33	11	24	29	1.91
17129--17364	105	2.2	105	82	3	269	31	15	23	29	1.95
19081--19179	31	3.3	31	72	14	98	40	16	3	40	1.63
19055--19179	31	4.1	30	72	9	92	38	15	4	42	1.65
24788--24854	19	3.4	19	76	15	57	34	4	2	58	1.34
24818--24855	20	1.9	20	88	0	58	39	0	2	57	1.12
24857--24891	18	1.9	18	88	11	54	40	0	2	57	1.14
26064--26116	20	2.6	20	84	3	61	20	22	35	20	1.96
29869--29893	5	5.0	5	100	0	50	20	0	0	80	0.72
39866--39920	26	2.1	26	86	0	74	34	25	3	36	1.74
43016--43078	31	2.0	31	81	6	74	38	12	12	36	1.82
46621--46663	18	2.4	18	92	7	70	51	0	0	48	1.00
51867--51929	23	2.9	21	77	11	72	53	0	3	42	1.16
51904--51964	29	2.1	29	85	8	81	44	0	4	50	1.23
52145--52182	17	2.3	17	86	4	51	71	0	0	28	0.87
52133--52178	22	2.1	22	88	8	67	69	0	0	30	0.89
52131--52182	21	2.3	23	83	12	72	69	0	0	30	0.89
52510--52551	22	2.0	22	85	4	59	71	0	7	21	1.09
58589--58636	24	2.0	23	84	4	60	37	4	2	56	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64177--64348	41	4.2	40	78	11	154	19	20	26	33	1.97
64217--64371	41	3.8	41	79	3	125	19	22	27	30	1.98
65571--65707	54	2.5	54	85	3	186	27	21	31	19	1.97
65761--65886	37	3.4	37	98	0	243	32	37	9	20	1.85
66692--66745	21	2.6	21	85	5	74	33	25	7	33	1.84
68553--68593	16	2.6	16	81	11	50	31	17	4	46	1.69
72074--72115	12	3.6	12	80	6	50	61	0	0	38	0.96

Tables:   1

The End!