genome.fa.s13048.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013048.1 Kokia drynarioides strain JFW-HI SEQ_128066, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  145146

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10--61	20	2.7	20	81	3	70	50	1	3	44	1.31
45--101	22	2.6	21	81	10	60	54	3	0	42	1.17
10104--10128	12	2.1	12	100	0	50	68	0	32	0	0.90
15767--16004	52	4.6	52	86	3	318	26	12	23	36	1.91
30171--30461	52	5.6	52	86	1	395	26	13	23	36	1.92
30170--30461	156	1.9	156	89	1	460	27	13	23	36	1.92
32723--32787	21	3.1	21	71	4	60	29	13	23	33	1.93
49199--49244	22	2.1	22	84	8	58	13	8	15	63	1.52
56581--56764	26	7.2	26	79	7	178	32	29	16	22	1.95
56579--56764	51	3.7	49	82	6	194	31	29	16	22	1.95
56581--56761	77	2.4	77	82	8	217	32	29	16	22	1.95
60203--60250	17	2.8	17	80	0	60	50	14	16	18	1.79
60201--60258	17	3.4	17	72	9	55	48	12	22	17	1.80
60203--60268	34	1.9	34	84	0	87	46	12	21	19	1.82
73055--73146	48	1.9	48	84	0	121	39	15	21	23	1.92
72906--73393	123	4.0	123	81	7	516	40	19	18	21	1.91
73302--73489	48	3.9	48	84	0	243	40	15	22	21	1.90
73302--73489	96	2.0	95	88	1	277	40	15	22	21	1.90
73397--73856	123	3.7	121	85	1	580	40	16	21	22	1.91
74862--74910	15	3.4	14	83	10	55	81	6	6	6	0.98
75696--75825	29	4.4	29	76	6	111	37	19	1	41	1.61
75696--75790	30	3.2	30	77	5	95	38	16	2	42	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79896--79939	21	2.1	21	91	4	72	0	18	0	81	0.68
79896--79940	11	4.2	10	81	13	54	0	17	0	82	0.68
87306--87339	15	2.4	14	85	9	50	17	23	8	50	1.74
95805--96068	35	7.6	34	71	7	145	26	22	18	32	1.97
95815--96001	70	2.7	70	86	1	250	27	21	18	32	1.96
95814--96033	70	3.1	70	78	10	225	27	21	18	32	1.96
100747--100970	112	2.0	112	100	0	448	33	19	14	33	1.92
112821--112882	35	1.9	33	84	15	85	62	0	3	33	1.11
113215--113318	31	3.4	31	69	15	108	13	23	7	55	1.63
113306--113337	10	3.3	10	91	8	57	9	28	0	62	1.26
113304--113333	9	3.2	9	90	9	51	10	23	0	66	1.21
115839--115877	9	4.1	9	87	12	60	51	0	0	48	1.00
115839--115877	20	2.1	19	90	9	62	51	0	0	48	1.00
116661--116858	99	2.0	99	93	0	342	36	8	31	22	1.85
117018--117071	15	3.6	16	75	12	60	44	1	0	53	1.11
117013--117089	29	2.7	28	82	7	109	46	1	0	51	1.09
117034--117081	16	3.4	13	78	18	51	50	0	0	50	1.00
118059--118137	22	3.6	22	94	0	131	37	3	18	39	1.69
120027--120079	18	2.8	19	83	13	74	41	7	11	39	1.69
121569--121776	40	5.2	40	78	4	197	31	23	18	26	1.97
121590--121769	79	2.3	79	87	0	252	31	23	18	26	1.97
123145--123322	72	2.6	70	90	6	267	22	5	15	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126650--126681	16	2.0	16	93	0	55	25	18	3	53	1.59
127459--127536	11	6.9	11	77	18	72	42	1	1	55	1.16
127459--127546	17	5.1	17	84	1	113	45	2	1	51	1.21
127466--127546	6	14.0	6	76	17	82	45	2	1	50	1.22
129210--129353	30	5.2	28	69	17	113	33	28	3	34	1.74
129197--129292	50	1.9	50	87	4	140	33	30	3	33	1.73
129226--129272	21	2.2	21	88	7	69	36	31	2	29	1.70
129247--129353	30	3.6	30	81	5	119	34	27	2	35	1.72
129247--129387	29	4.8	29	79	10	110	34	26	3	36	1.74
129247--129382	59	2.3	59	81	10	154	33	25	3	37	1.73
140595--140649	27	2.0	27	96	0	101	16	20	7	56	1.63
141135--141924	207	3.8	207	94	0	1314	37	20	21	21	1.95
141135--141924	413	1.9	414	92	1	1316	37	20	21	21	1.95
142556--142985	30	14.6	29	81	9	453	33	28	3	34	1.75
142556--143045	30	16.6	29	79	9	399	32	27	4	35	1.77
142556--142986	59	7.3	59	86	3	566	32	28	3	34	1.76

Tables:   1

The End!