Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013049.1 Kokia drynarioides strain JFW-HI SEQ_128067, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4386
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29

Warning! 57 characters in sequence are not A, C, G, or T


Found at i:3380 original size:45 final size:45

Alignment explanation


    Indices: 3322--3413  Score: 157
    Period size: 45  Copynumber: 2.0  Consensus size: 45

       3312 TGGAGGAGTA

                                   *                     
       3322 GAGTATTGCGGTGGCTCGTCAAATTGAGGCTGATATCCTTGGCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

                    *          *                         
       3367 GAGTATTGTGGTGGCTCGTTAAACTGAGGCTGATATCCTTGGCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

              
       3412 GA
          1 GA

       3414 TGAGCTATGC


Statistics
Matches: 44,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  45   44  1.00

ACGTcount: A:0.18, C:0.16, G:0.32, T:0.34


Consensus pattern (45 bp):   
GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT
Done.