genome.fa.s13055.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013055.1 Kokia drynarioides strain JFW-HI SEQ_128073, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  217179

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416--471	3	19.0	3	92	3	96	30	0	1	67	1.01
1213--1264	17	3.0	18	81	13	65	48	5	0	46	1.26
1202--1263	17	3.7	16	82	6	61	45	4	1	48	1.33
6188--6419	43	5.3	43	85	5	288	29	34	15	20	1.94
11664--11698	8	4.4	8	88	0	52	65	2	0	31	1.07
11718--11744	14	1.9	14	100	0	54	44	0	0	55	0.99
11732--11866	50	2.8	48	80	12	170	45	3	5	45	1.43
11851--11889	20	2.0	20	89	0	60	56	2	0	41	1.13
11665--11883	91	2.4	91	83	7	289	47	3	4	44	1.39
11778--11885	44	2.5	43	88	8	150	46	1	4	47	1.34
16254--16522	41	6.6	41	81	4	256	20	28	20	30	1.98
16254--16522	82	3.3	80	81	5	283	20	28	20	30	1.98
16469--16607	40	3.4	40	79	9	138	16	25	17	40	1.90
18017--18057	6	6.8	6	91	0	55	34	31	14	19	1.92
18027--18062	18	2.0	18	88	0	54	36	25	13	25	1.93
18125--18175	7	7.6	7	78	8	52	17	21	23	37	1.94
18125--18182	13	4.3	14	80	6	66	18	20	22	37	1.94
18125--18175	20	2.5	20	90	0	84	17	21	23	37	1.94
20724--20765	22	1.9	22	90	0	66	50	7	4	38	1.51
22991--23128	72	1.9	72	89	0	213	36	20	17	26	1.94
23088--23172	42	2.0	42	97	0	161	30	14	22	32	1.93
24191--24272	3	27.7	3	72	9	53	2	19	4	73	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24191--24274	6	14.2	6	79	2	71	2	19	4	73	1.12
26769--26821	23	2.3	22	81	9	61	45	0	1	52	1.11
27314--27342	2	14.5	2	100	0	58	48	0	0	51	1.00
29551--29585	18	2.0	17	88	5	52	25	0	5	68	1.11
33516--33543	13	2.2	13	100	0	56	39	25	0	35	1.56
37738--38108	29	12.6	28	79	7	303	38	26	1	34	1.65
42872--42950	7	10.7	7	72	14	61	79	0	20	0	0.73
42871--42950	19	4.1	19	73	16	74	80	0	20	0	0.72
42871--42950	22	3.7	21	71	14	63	80	0	20	0	0.72
42868--42950	29	2.8	30	77	18	100	79	0	20	0	0.73
42889--42950	28	2.2	29	91	2	99	79	0	20	0	0.74
42867--42947	9	9.3	9	78	10	73	77	0	22	0	0.76
42868--42952	25	3.4	24	73	21	77	78	0	21	0	0.74
43894--44255	99	3.7	98	77	5	252	33	17	30	18	1.94
43886--44251	50	7.4	49	74	8	260	33	16	31	18	1.93
44497--45107	78	7.9	78	85	1	692	24	30	19	25	1.98
44497--45107	155	3.9	155	85	4	737	24	30	19	25	1.98
45099--45400	154	1.9	156	86	4	432	25	30	18	25	1.98
44497--45365	39	22.4	39	71	2	411	25	30	18	25	1.98
45042--45456	78	5.3	78	76	10	296	25	31	18	25	1.98
46925--47007	33	2.5	34	82	11	109	55	3	2	38	1.30
46936--46975	21	1.9	21	84	0	53	60	5	2	32	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48416--48458	17	2.4	18	84	7	61	4	4	18	72	1.20
48476--48568	12	8.1	12	75	9	77	6	4	20	68	1.29
48383--48494	58	1.9	57	84	13	149	9	4	18	66	1.37
48503--48569	23	3.2	20	80	14	80	4	4	22	68	1.26
48486--48556	32	2.2	32	82	2	79	4	5	22	67	1.29
52104--52170	31	2.2	31	100	0	134	37	17	19	25	1.94
52780--52847	21	3.2	21	83	4	75	33	25	16	25	1.95
53583--53818	52	4.6	52	85	4	286	34	23	12	29	1.92
66579--66634	27	2.1	26	86	3	76	53	16	3	26	1.59
69468--69497	15	2.0	15	100	0	60	26	0	6	66	1.16
70175--70203	14	2.1	14	100	0	58	44	13	0	41	1.44
70496--70539	22	2.1	22	87	8	65	68	0	0	31	0.90
75598--75623	2	13.0	2	100	0	52	50	0	0	50	1.00
80774--80803	15	1.9	16	93	6	53	16	6	10	66	1.41
88804--88831	2	14.0	2	100	0	56	50	0	0	50	1.00
95423--95473	2	26.0	2	96	4	95	49	0	0	50	1.00
102463--102496	2	17.0	2	100	0	68	50	0	0	50	1.00
107521--107579	30	2.0	30	83	12	77	45	5	0	49	1.24
110453--110484	15	2.1	15	94	0	55	65	6	6	21	1.38
111782--111813	15	2.1	15	94	0	55	65	9	6	18	1.42
115070--115117	25	2.0	25	83	4	62	33	6	2	58	1.35
128851--128876	3	8.7	3	100	0	52	34	65	0	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129513--129609	48	2.0	47	98	2	185	37	14	15	32	1.88
129692--129723	2	16.0	2	100	0	64	50	0	50	0	1.00
142249--142305	25	2.3	25	90	3	98	35	3	5	56	1.39
150569--150618	6	8.2	6	91	4	55	74	10	0	16	1.08
150570--150618	18	2.7	18	87	3	71	73	10	0	16	1.09
150611--150716	30	3.4	31	80	6	99	64	7	2	25	1.34
157131--157155	13	1.9	13	100	0	50	48	32	12	8	1.69
157599--157635	14	2.7	14	91	4	58	56	10	0	32	1.34
160888--160913	12	2.2	12	100	0	52	53	7	0	38	1.30
161928--162094	68	2.5	68	84	2	228	33	16	23	26	1.95
168399--168501	30	3.4	29	79	12	93	36	18	3	40	1.69
168409--168521	60	1.9	60	84	0	154	36	19	5	38	1.75
180223--180416	50	3.9	50	79	2	219	33	17	27	21	1.96
180189--180427	100	2.4	100	88	3	340	33	17	25	23	1.96
180561--180601	20	2.0	20	90	9	66	29	21	12	36	1.90
180581--180720	40	3.5	39	72	9	122	35	25	14	25	1.93
180700--180740	20	2.0	20	90	0	64	34	19	9	36	1.85
180720--180823	40	2.6	40	82	8	131	29	27	15	26	1.96
180530--180823	139	2.1	139	90	2	457	33	25	14	26	1.94
182393--182534	30	4.7	30	83	3	162	41	21	2	33	1.68
182393--182553	30	5.4	29	80	6	146	40	23	3	32	1.70
182388--182546	60	2.6	59	78	11	162	38	22	3	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206693--206754	3	19.7	3	79	15	63	3	29	1	66	1.17
207744--207791	2	24.0	2	95	0	87	52	0	47	0	1.00
210628--210667	20	2.0	20	90	0	62	60	0	0	40	0.97
212728--212773	22	2.1	22	100	0	92	26	13	28	32	1.93
214612--214638	2	13.5	2	100	0	54	48	0	0	51	1.00
216607--216657	20	2.5	20	81	6	59	19	1	7	70	1.21

Tables:   1

The End!