Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013056.1 Kokia drynarioides strain JFW-HI SEQ_128074, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1676
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36


Found at i:1444 original size:70 final size:71

Alignment explanation


    Indices: 1361--1504  Score: 227
    Period size: 70  Copynumber: 2.0  Consensus size: 71

       1351 TGGGCTTCTC

                  *                        *    *      *                     
       1361 ATTCAATATTAGTTGCCACTTTCATCTTGGATTAATGACGTTAGTCAAATTGGTTCATGTGTTTG
          1 ATTCAACATTAGTTGCCACTTTCATCTTGGACTAATAACGTTACTCAAATTGGTTCATGTGTTTG

                  
       1426 ACAA-T
         66 ACAAGT

                                                         *         *         
       1431 ATTCAACATTAGTTGCCACTTTCATCTTGGACTAATAACGTTACTTAAATTGGTTTATGTGTTTG
          1 ATTCAACATTAGTTGCCACTTTCATCTTGGACTAATAACGTTACTCAAATTGGTTCATGTGTTTG

                  
       1496 ACAAGT
         66 ACAAGT

               
       1502 ATT
          1 ATT

       1505 TATGTAAGAT


Statistics
Matches: 67,  Mismatches: 6, Indels: 1
        0.91            0.08        0.01

Matches are distributed among these distances:
  70   63  0.94
  71    4  0.06

ACGTcount: A:0.28, C:0.15, G:0.16, T:0.42


Consensus pattern (71 bp):   
ATTCAACATTAGTTGCCACTTTCATCTTGGACTAATAACGTTACTCAAATTGGTTCATGTGTTTG
ACAAGT
Done.