genome.fa.s13067.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013067.1 Kokia drynarioides strain JFW-HI SEQ_128085, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118927

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532--556	13	1.9	13	100	0	50	48	8	0	44	1.32
4069--4098	9	3.4	9	95	4	53	73	6	0	20	1.05
10242--10301	29	2.0	30	83	3	77	40	5	8	46	1.56
12395--12436	16	2.7	16	88	3	59	19	4	23	52	1.65
12407--12438	16	2.0	16	100	0	64	12	6	31	50	1.65
13645--13703	30	2.0	29	86	3	82	25	6	8	59	1.51
13709--13769	23	2.6	24	78	2	70	44	18	8	29	1.78
17202--17443	88	2.8	88	89	1	335	30	16	16	37	1.90
17345--17541	100	2.0	100	84	2	261	34	14	14	36	1.87
17347--17566	100	2.2	100	80	4	230	35	15	14	34	1.88
26598--26640	3	14.3	3	100	0	86	34	65	0	0	0.93
27340--27379	21	1.9	21	84	0	53	30	10	20	40	1.85
32458--32544	45	1.9	45	90	0	138	25	24	18	32	1.97
38092--38137	23	2.0	23	86	0	65	34	23	13	28	1.92
40056--40101	15	3.0	15	75	25	51	28	0	0	71	0.86
43753--43785	2	16.5	2	100	0	66	48	0	0	51	1.00
48566--48597	3	10.7	3	100	0	64	34	65	0	0	0.93
52411--52457	24	2.0	24	95	0	85	10	19	17	53	1.72
52413--52465	24	2.2	24	89	0	79	13	15	20	50	1.76
65965--66119	30	5.4	28	78	9	132	38	16	2	41	1.62
65978--66162	30	6.3	29	77	6	122	37	19	4	38	1.72
67543--67644	30	3.5	28	82	12	109	50	0	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68809--68895	30	2.9	30	84	1	113	37	2	22	36	1.67
68800--69071	29	9.2	30	78	9	229	37	4	22	35	1.73
72313--72367	28	2.0	28	85	0	74	34	14	27	23	1.94
73076--73127	21	2.5	21	81	6	61	28	11	28	30	1.92
74149--74220	37	1.9	37	83	5	92	29	20	12	37	1.90
74179--74305	63	2.0	63	95	0	227	30	21	14	33	1.93
80668--80692	9	2.8	9	100	0	50	8	32	0	60	1.26
80680--80713	13	2.4	15	85	14	54	5	29	0	64	1.17
81720--81774	24	2.3	23	76	11	58	36	20	10	32	1.87
92334--92383	23	2.1	24	82	10	59	48	0	24	28	1.52
96572--96608	18	2.0	20	84	10	51	54	8	10	27	1.63
97152--97281	59	2.2	59	83	6	158	44	1	18	35	1.59
97190--97460	59	4.6	58	81	7	278	41	2	19	36	1.64
97186--97451	30	9.0	30	82	4	281	42	1	19	35	1.63
99683--99753	25	2.8	24	83	10	70	52	0	0	47	1.00
99708--99752	13	3.6	12	79	8	54	57	0	0	42	0.98
99702--99753	25	2.0	26	92	3	88	53	0	0	46	1.00
100306--100471	30	5.6	29	77	5	109	39	4	19	37	1.71
100348--100476	29	4.4	30	77	4	102	39	3	19	37	1.70
102454--102545	11	7.8	12	70	13	66	44	3	2	50	1.30
102454--102545	6	15.7	6	70	13	66	44	3	2	50	1.30
102440--102484	17	2.6	18	82	3	56	40	4	2	53	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102475--102543	17	3.9	17	77	11	68	40	2	2	53	1.31
102512--102562	23	2.2	23	82	6	59	52	3	3	39	1.38
102698--102761	32	2.0	31	93	3	110	20	42	20	15	1.88
104358--104684	29	11.1	29	72	12	231	38	27	1	32	1.68
104372--104684	58	5.3	60	83	6	295	38	27	1	32	1.68
104576--104796	58	3.8	56	78	9	187	33	23	5	36	1.79
104666--104756	29	3.1	29	69	12	87	32	20	9	36	1.86
116846--117434	206	3.0	196	84	5	754	35	19	23	21	1.95
117815--117891	6	12.8	6	81	9	77	44	1	2	51	1.23
117801--117909	17	6.5	17	75	13	84	40	2	2	54	1.29

Tables:   1

The End!