genome.fa.s13075.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013075.1 Kokia drynarioides strain JFW-HI SEQ_128093, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  540471

Tables:   1   2   

This is table  1  of  2  ( 127 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234--278	20	2.5	17	83	16	56	62	2	33	2	1.20
1136--1240	23	4.5	23	78	7	86	10	21	21	45	1.82
1157--1237	23	3.4	23	81	8	92	11	19	23	45	1.82
8144--8168	12	2.1	12	100	0	50	32	40	20	8	1.81
9900--10092	93	2.1	92	95	1	350	35	8	18	37	1.82
15720--15765	23	2.0	23	88	12	69	39	0	0	60	0.97
22765--22845	40	2.0	40	100	0	162	32	17	14	35	1.90
23970--24012	11	3.8	11	80	17	52	65	0	2	32	1.06
31909--31966	22	2.7	21	81	5	62	56	1	1	39	1.19
31909--31963	21	2.5	22	85	2	67	58	1	1	38	1.20
32007--32063	29	2.0	29	82	6	71	36	21	15	26	1.93
33265--33296	15	2.0	17	88	11	50	40	0	12	46	1.42
34039--34176	23	6.0	23	92	0	213	14	20	22	42	1.88
34006--34225	23	9.5	23	81	8	205	12	21	21	44	1.85
34007--34225	69	3.1	69	84	6	230	12	21	21	44	1.85
35671--35717	21	2.2	21	88	0	67	36	19	44	0	1.51
36030--36287	43	6.0	42	85	3	284	23	20	29	26	1.99
36030--36285	129	2.0	128	84	2	334	23	20	30	26	1.99
40211--40245	3	11.7	3	93	0	61	68	0	31	0	0.90
47476--47510	18	1.9	18	100	0	70	34	11	17	37	1.85
51430--51457	6	4.7	6	100	0	56	14	0	0	85	0.59
55894--56038	73	2.0	70	82	11	170	28	7	3	60	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79270--79304	2	17.5	2	100	0	70	48	0	0	51	1.00
83925--83973	20	2.6	19	77	6	55	63	2	0	34	1.06
104973--105018	24	1.9	24	95	0	83	41	19	13	26	1.88
108285--108326	20	2.1	20	82	8	50	57	4	0	38	1.20
121828--121890	29	2.1	29	85	2	81	44	1	1	52	1.20
122519--122563	15	2.9	15	77	6	54	24	0	4	71	1.05
123048--123085	3	12.7	3	100	0	76	65	0	0	34	0.93
128172--128205	14	2.4	14	90	9	52	44	5	20	29	1.75
129761--129865	52	2.0	52	96	0	192	30	14	25	29	1.95
131100--131156	16	3.4	16	73	4	51	33	0	15	50	1.44
131619--131648	7	4.4	7	91	8	53	43	0	0	56	0.99
132766--132814	22	2.2	22	85	7	64	28	2	12	57	1.46
136523--136563	2	20.5	2	100	0	82	51	0	48	0	1.00
139501--139553	25	2.1	25	92	0	88	37	28	11	22	1.89
139567--139642	32	2.5	31	85	12	104	34	13	6	46	1.69
148340--148382	10	4.3	10	81	0	50	83	0	9	6	0.80
155268--155299	4	8.0	4	92	0	55	28	0	0	71	0.86
157150--157209	27	2.2	27	80	11	68	45	0	5	50	1.23
162857--162886	10	3.0	10	100	0	60	0	30	10	60	1.30
169314--169389	10	7.8	10	69	15	52	64	2	0	32	1.07
169314--169388	19	3.8	20	74	10	57	65	2	0	32	1.07
174707--174738	8	4.0	8	100	0	64	62	0	37	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175187--175217	10	2.9	11	90	9	55	64	0	9	25	1.24
175820--175986	23	7.5	22	71	15	112	11	23	20	44	1.84
175820--175981	48	3.6	46	71	19	128	11	24	20	43	1.84
175943--175991	23	2.1	23	92	0	80	10	20	18	51	1.75
178060--178092	2	16.5	2	100	0	66	51	0	0	48	1.00
193205--193392	88	2.2	85	80	10	211	41	15	8	34	1.78
193781--193903	56	2.2	56	83	5	149	29	6	3	60	1.37
193873--193930	30	1.9	30	82	6	73	39	1	0	58	1.08
206633--206662	7	4.3	7	100	0	60	16	30	13	40	1.87
226434--226459	2	13.0	2	100	0	52	50	50	0	0	1.00
243003--243033	2	15.5	2	100	0	62	51	0	0	48	1.00
243185--243365	90	2.0	89	92	1	299	40	22	13	23	1.89
255700--255725	2	13.0	2	100	0	52	50	50	0	0	1.00
265422--265457	2	18.0	2	100	0	72	50	0	0	50	1.00
275011--275073	29	2.3	27	76	10	65	33	20	7	38	1.82
276795--276820	5	5.2	5	100	0	52	19	0	0	80	0.71
291338--291467	54	2.4	56	80	5	140	34	16	10	38	1.83
300656--300682	2	13.5	2	100	0	54	48	0	51	0	1.00
308732--308761	2	15.0	2	100	0	60	50	0	0	50	1.00
309678--309853	58	3.1	56	82	4	210	29	15	11	43	1.82
309923--310006	40	2.2	40	87	8	120	36	0	2	60	1.10
309938--310006	20	3.5	20	75	11	70	34	0	2	62	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310083--310235	56	2.7	56	84	7	195	41	11	17	30	1.84
316079--316114	18	2.1	17	89	5	54	11	0	22	66	1.22
317372--317402	7	4.4	7	95	0	53	19	16	51	12	1.76
325617--325650	18	1.9	18	88	5	52	67	5	2	23	1.26
328252--328321	30	2.3	31	78	11	74	62	0	1	35	1.04
328310--328340	8	3.9	8	100	0	62	87	0	0	12	0.55
329620--329664	18	2.3	21	81	11	60	40	0	0	60	0.97
329617--329669	22	2.4	21	84	6	70	39	0	0	60	0.97
331184--331235	24	2.2	24	82	6	61	19	63	3	13	1.44
332662--332696	2	18.0	2	88	5	54	51	0	48	0	1.00
334933--335163	51	4.5	51	81	3	230	29	23	15	31	1.95
334986--335164	51	3.5	50	85	5	232	30	23	15	31	1.95
341961--342011	3	16.7	3	95	4	93	0	33	0	66	0.92
341961--342018	6	9.4	7	94	5	60	0	34	0	65	0.93
351586--351617	2	16.0	2	100	0	64	50	0	0	50	1.00
352491--352571	23	3.5	23	79	1	90	46	17	9	25	1.78
352669--352727	12	5.0	12	80	10	68	44	13	15	27	1.84
360775--360808	16	2.2	15	89	5	50	38	14	26	20	1.91
369011--369045	16	2.1	17	89	5	54	51	8	2	37	1.47
369335--369387	16	3.3	16	74	10	54	39	5	5	49	1.50
370814--370840	2	13.5	2	100	0	54	48	0	0	51	1.00
371430--371515	45	1.9	45	100	0	172	29	13	13	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380769--381257	129	3.8	129	90	1	725	32	20	21	25	1.98
401017--401045	3	9.7	3	100	0	58	68	0	0	31	0.89
402712--402749	4	9.5	4	100	0	76	23	50	0	26	1.50
408893--408946	21	2.7	20	94	5	99	61	1	0	37	1.07
409025--409052	3	9.3	3	100	0	56	67	0	32	0	0.91
416175--416204	8	3.8	8	100	0	60	76	23	0	0	0.78
422495--422521	2	13.5	2	100	0	54	48	0	0	51	1.00
423712--423753	21	2.0	21	86	9	59	47	0	0	52	1.00
431577--431689	58	1.9	58	94	0	199	40	13	10	35	1.79
432090--432408	159	2.0	159	100	0	638	34	14	20	30	1.93
442619--442801	30	6.2	29	77	10	174	29	5	31	33	1.80
442612--442801	59	3.2	60	85	12	234	28	5	31	34	1.80
442809--442842	7	4.9	7	85	0	50	14	0	35	50	1.44
443694--443740	12	4.3	10	80	19	58	36	2	2	59	1.21
443707--443736	3	9.7	3	92	7	51	36	0	0	63	0.95
443694--443740	22	2.1	22	88	0	67	36	2	2	59	1.21
444480--444533	17	3.1	17	81	2	54	46	3	1	48	1.30
451352--451396	22	2.0	22	100	0	90	13	17	22	46	1.83
459430--459454	2	12.5	2	100	0	50	52	0	0	48	1.00
459745--459772	6	4.7	6	100	0	56	17	14	32	35	1.90
460921--460950	6	5.0	6	91	0	51	0	63	0	36	0.95
469620--469652	12	2.5	13	90	9	50	0	24	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495534--495559	2	13.0	2	100	0	52	50	0	0	50	1.00
497991--498019	13	2.1	14	93	6	51	34	48	6	10	1.64
498405--498445	22	1.9	22	90	5	66	70	4	0	24	1.06
498409--498454	22	2.1	22	83	0	56	71	4	2	21	1.14
502912--502953	20	2.1	20	95	0	75	50	16	7	26	1.71
504925--504978	27	1.9	29	82	14	69	20	1	27	50	1.59
510484--510517	14	2.3	15	90	5	52	55	0	8	35	1.31
513312--513358	23	2.0	23	100	0	94	46	4	12	36	1.62
513635--513826	52	3.7	52	87	1	269	25	13	26	35	1.93
513635--513826	104	1.8	104	88	2	296	25	13	26	35	1.93

Tables:   1   2