Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013080.1 Kokia drynarioides strain JFW-HI SEQ_128098, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22365
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Warning! 95 characters in sequence are not A, C, G, or T
Found at i:790 original size:337 final size:339
Alignment explanation
Indices: 122--7561 Score: 8699
Period size: 337 Copynumber: 22.1 Consensus size: 339
112 GATCGCACCC
** * * * * *
122 ATGTAAATAGATTATGCAAAACCTAACGGGTGTGTTCTTACCAACACTCATGCACTGGATCCCAT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCAT
* * * * * * * * *
187 CAAAACTCTGCAGTTAAGCGTGATTGGGTTG-GAATAGTATTAGGATGGGTGACCTCCTAGGAAT
66 CAGAACTCCGCAGTCAAGCGTGCTTGGG-CGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG
* * * * **
251 TCCTCATGTTGCACCCCTCTTTTTTATTATTATTTTATTTAGCATAATTTTGCATTTTGAAAAAT
130 TCCTCGTGTTGCACCCCTC-TTTTT-TTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAAT
* * * * *
316 AATAATGCTTCTTGGGAAGCATGAAAATTATTAGCTTACTTTGCATTTTTATTTTATTTTTTTTA
193 AATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTA-TTTTTTTA
* * *
381 TTTGCAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATG
257 TTCGCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATG
446 CGATGAAAGGTAGCCTTT
322 CGATGAAAGGTAGCCTTT
* ** * * * *
464 ATGTTAATAGATTGCATAAAACCAAATGGGTGCGATCATATCAGCATTAATGCACTGGATCCCAT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCAT
* **
529 CAGAACTCCGTAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGCAACCTCCTGGGAAGT
66 CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
* * *
594 CCTCGTGTTGCACCCCACTTTTTTTATTATTTTATTTATCGTAATTTTGCATTTTGCGAAACAAT
131 CCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAAT
* *
659 AATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTACA-TTTTATTTTA-TTTTTTATTCA
196 AATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCG
* * ** **
722 CAAAATACGTCTACCCGAGCATTATTTAGGTATATTTACATTTGAATTCGAGGCACGAATATGAT
261 CAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGAT
* *
787 GAAAGGTAACCTTC
326 GAAAGGTAGCCTTT
* * * * * * * *
801 ATGTAAATAGATTGCACAAAGTCCTAACGGGTGCGTTCATTCCAACACTAGTGCA-TCAGATTCC
1 ATGTAAATAGATTGCGCAAA-ACCTAACGGGTGCGATCATACCAGCACTAATGCACT-GGATCCC
* * * * * **
865 ATTAGAATTCTGCAGTCAAGCGTGCTTAGGCGAGAGTAGTATTAGGATGGGTGACCTTTTGGGAA
64 ATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAA
* *
930 GTTCTCGTGTTGCACCCCTCTTTTTTT-TTATTTTTTTTATCGTAAGTTTGCATTTTGCGAAATA
129 GTCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATA
* * * * *
994 ACAATGCTTCTTGGGAAACATGAAAATTATTAGCGTACTTTGCATTTATATTTTATTTTTTTATT
194 ATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATT
* * * * *
1059 TGCAAAACATGTCCT-CCCAAGCTTTATTTGGGTATATTTACATTTAAATTCGAGGCACGAATGC
259 CGCAAAATACGT-CTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGC
*
1123 GATGAAAGATAGCCTTT
323 GATGAAAGGTAGCCTTT
* * * * * *
1140 ATGTTAATAGATTGAGCAAAACCTAAAGGGTGCAATCATACCAGCAATAATGCATTGGATCCCAT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCAT
* * * *
1205 CAAAACTCTGCAATCAAGCGTGCTTGGGCGAGAGTAGTACAAGGATGGGTGACCTCCTGGGAAGT
66 CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
*
1270 CCTCGTGTTGCACCCCTC-TTTTTTATTATTTTATTTATCGTAAGTTT-CAATTTTGCAAAATAA
131 CCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGC-ATTTTGCGAAATAA
* *
1333 TAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGTA-TTTTATTTGATTTTTTTATTC
195 TAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTC
* * * *
1397 GCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTCGAATTCAAGGCACGAATACGA
260 GCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGA
1462 TGAAAGGTAGCCTTT
325 TGAAAGGTAGCCTTT
* * * * **
1477 ATGTAAATAGATTGCACAAATCCTAACGGGTGCGTTCATACCAGCACTAATTCA-TCGGATCCTG
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACT-GGATCCCA
* ** * * * * * **
1541 TCAGAATTCTTCAGTTAAGCGTGCATGGGTTG-GAATAGTACTAGGATGGGTGACATCCTAAGAA
65 TCAGAACTCCGCAGTCAAGCGTGCTTGGG-CGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAA
* * * * * *
1605 ATCCTCTTGTTGCA-CCC-CTTTTTTTATTATTTCATTTATCGTAATTTTGCGTTTTGCGGAATA
129 GTCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATA
* * * *
1668 ATAATGCTTCTTGGGAAGCATGGAA-ATTATTAGCGTACTTTTCATTTTTATTTTATTTTTTTAT
194 ATAATGCTTATTGGGAAACAT-TAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTAT
* ** * * *
1732 TCTCAAAATATATCTACCCGAGCATTATTTAGGTATATTTACATTCAAATTCGAGGCATGAATGC
258 TCGCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGC
1797 GATGAAAGGTAGCCTTT
323 GATGAAAGGTAGCCTTT
* *
1814 ATGTTAATAGATTGCACAAAA-CTAAACGGGTGCGATCATACCAGCACTAATGCA-TCGGATCCC
1 ATGTAAATAGATTGCGCAAAACCT-AACGGGTGCGATCATACCAGCACTAATGCACT-GGATCCC
** * * *
1877 ATCAGAACTTTGCAGTCAAACGTGCTTGGGCGAGAGTAGTACTAGGATGGGCGACCTCTTGGGAA
64 ATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAA
* * *
1942 GTCCTCGTGTTGCATCCCTCTTTTTTTATTATTTTATTTATCATAATTTTGCATTTTGCGAAATA
129 GTCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATA
* * * *
2007 ATAATGCTTATTGGGAATCATTAACATTATTAACATACTTTGTATTTTTATTTTA-TTTTTTATT
194 ATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATT
* * * ** * * *
2071 CGAAAAATACGTCCACTCGAGAATTATTTGGGTATATTTATATTCGAATTCGAGGCACGAATACG
259 CGCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCG
2136 ATGAAAGGTAGCCTTT
324 ATGAAAGGTAGCCTTT
* * * * *
2152 ATATAAATAGATTGCGCAAATCCTAACGGGTACGTTCATACCAGCACTAATGCATTGGATCCCAT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCAT
* * * * * * *
2217 AAGAATTCCGCAATCAAGCGTGCTTGGGCGAGAGTAGTA-TAAGGATGGGTGATCTTCTAGGATG
66 CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACT-AGGATGGGTGACCTCCTGGGAAG
* * *
2281 TCCTCGTGTTGCACCCCTCTTTTATTATTATTTTATTTATCGTAAGTTTGCATTTTGAGAAATAT
130 TCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAA
* ** *
2346 TAATGCTTCTTGGGAAACAAGAAAATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTC
195 TAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTC
* * * *
2411 GTAAAATACGTCTTCCCGAGCTTTATTTGGGTATATTTACATTCAAATTAGAGGCACGAATGTGA
260 GCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGA
*
2476 TTAAAGGTAGCCTTT
325 TGAAAGGTAGCCTTT
* * * * *
2491 ATGTAAATAGATTGCGTAAAACCTAACGAGTGCGATAATACCAGCGCTAATGCACTAGATCCCAT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCAT
* * * * * * * * * *
2556 CAGAACACTGCAGTTATGGGTGGTTGGGCGAGAGTAGTAATAGGATGGGTGATCTCCTAGAAAGT
66 CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
* * * * *
2621 CCTCATGTTGCACACCTCTTTTCTTTATTATTTTATTTATTGTAAATTTGCATTTTGCAAAATAA
131 CCTCGTGTTGCACCCCTCTTTT-TTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAA
* * ** * ** *
2686 TAATGCTTGTTGGGAAAGAAGAACATTATTAGCGTACTTTGCATTTTTACTTTATTTTTGAATTA
195 TAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTC
* * *
2751 GCAAAATACGTCTTCCCGAGCTTTATTTGGGTATATTTACTTTCAAATTCGAGGCACGAATGCAA
260 GCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGA
2816 TGAAAGGTAGCCTTT
325 TGAAAGGTAGCCTTT
* * * * *
2831 ATGTAAATAGATTGCGCAAAACCTAGCAGCTGCGATCATACCAGCGCAAATGCACTGGATCCCAT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCAT
* * * * * * *
2896 TAGAACTCCACAGTTAAGCGTGCTTAGGCAAGAGTAGTACTAGGATGGGTGTCCTCCTAGGAAGT
66 CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
* *
2961 CCTCGTGTTGCACCCCTC--------TT-TTTT-TTTATCGTAAGTTTGCATTTTGAGAAATGAT
131 CCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAAT
* * * *
3016 AATGATTCTTGGGAAACATGAACATTATTAGCGTACTTTGCTTTTTTATTTTA-TTTTTTATTCG
196 AATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCG
* * *
3080 CAAAATACGTCTTCCCGAGCTTTATTTGGGTATATGTACATTCAAATTCGAGACACGAATGCGAT
261 CAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGAT
*
3145 GAAAGATAGCCTTT
326 GAAAGGTAGCCTTT
* * * * * * *
3159 ATGTTAATAGATTGCTCAAAATCTAACGGGTGTGATCATACTAGCACTAATGCACCGTATCCCAT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCAT
* * * **
3224 CAGAACTCCGCAATCAAAGCATGCTTGGGCGAGAGTAGTACTAGGATTGGTGACCTCCTAAGAAG
66 CAGAACTCCGCAGTC-AAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG
* * *
3289 TCCTCGTGTTGCATCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTCCATTTTACGAAATAA
130 TCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAA
* * *
3354 TAATGTTTATTGGGAAACTTTAAAATTATTAGCGTACTTTGCA----T-TTTT-TTTTTTTATTC
195 TAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTC
* * * * * * ** * **
3413 GCAAAGTACGTTTACCTGAGCATTAATTGGGTGTATTTACATTTGAATTTGAGGCACGAATATGA
260 GCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGA
3478 TGAAAGGTAGCCTTT
325 TGAAAGGTAGCCTTT
* * * * * * * **
3493 ACGT-AATCGATTGGGCAAAATACTAACGGGTGCG-TACATACCAGTATTAAGGCAAC-ACATCC
1 ATGTAAATAGATTGCGCAAAA-CCTAACGGGTGCGAT-CATACCAGCACTAATGC-ACTGGATCC
* * * *
3555 CATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGACAGTAGTACTAAGATGGGTGACCTCTTAGGA
63 CATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGA
* * *
3620 AGTCCTCATGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTCCATTTTGCAAAAT
128 AGTCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAAT
* *
3685 AATAATGCTTATTGGGAAACATTAACATTATTAGCATACTTTTCATTTTTATTTTA-TTTTTTAT
193 AATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTAT
* **
3749 TCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATAT
258 TCGCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGC
3814 GATGAAAGGTAGCCTTT
323 GATGAAAGGTAGCCTTT
* * * * * * * * *
3831 ATGTAAATAGATTGAGCAAATCCTAACGGGTGCGTTTATACCAACAGTATTGCACCGGATCACAT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCAT
* * ** * * * * * *
3896 CAAAATTATGCAATCAAGCGTGCTTGGGCGAGAGTAGTATTATGTTGGGTGAACTCTTGGGAAGT
66 CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
* * *
3961 CCTCGTGTTGCACCCCTCTTTTTTATATTATTTTATTTCTCGTATGTTTGCAGTTTGCGAAATAA
131 CCTCGTGTTGCACCCCTCTTTTTT-TATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAA
* * * * *
4026 TAATGCTTCTTGGGAAACATGAATATTATTAGCGTACTTTTCATTATTATTTTATTTTTTTATTC
195 TAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTC
* * * * *
4091 ACAAAATACGACCT-CTCGAGCTTTATTTGGGTATATTTACATTTAAATTCGAGGCGCGAATGCG
260 GCAAAATACG-TCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCG
*
4155 ATGAAAGGTAGCCTAT
324 ATGAAAGGTAGCCTTT
* * * * *
4171 ATGTAAATAGATTGCGCAAAACTTAACGGGTGTGGTCATACCAGCACTAAAGCGCTGGATCCCAT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCAT
* * *
4236 CAGAACTCCGCAATCAAGTGTTCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
66 CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
* ** * *
4301 TCTCGTGTTGCACCCCAATTTTTCTATTATTTTATTTATCATAAGTTTGCATTTTGCGAAATAAT
131 CCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAAT
*
4366 AATGCTTAATGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCG
196 AATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCG
* * * * *
4431 TAAAATACGTCTACCCCAGC---A--TGGGTATATTTACATTCGAATTCGAGTCACGAATACGAT
261 CAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGAT
4491 GAAAGGTAGCCTTT
326 GAAAGGTAGCCTTT
* * * *
4505 ATTTAAATAGATT----AAATCCTAACTGGTGTG-T--T-----CA--AATGCA-TCGGATCCCA
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACT-GGATCCCA
* * * * ** * *
4555 TTAGAATTCTGCAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGTTTGGGTGAACTCCTGGAAAG
65 TCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG
* * * *
4620 TCCTCGTGTTACACCCCTCTTTTTTTATTATTTAATTTATCGTAAGTTTGTATTTTGCGAAAAAA
130 TCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAA
* * * * * *
4685 TAATGCTTCTTAGGAAACATGAAAATTATTAGCGTGCTTTGCACTTTTATTTTA-TTTTTTATTC
195 TAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTC
* * * * * *
4749 ACAAAACACGTCTTCCCGAGCTTTATTCGAGTATATTTACATTTAAATTCGAGGCACGAATGCGA
260 GCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGA
*
4814 TGAATGGTAGCCTTT
325 TGAAAGGTAGCCTTT
* * * * *
4829 ATGTTAATAGATTGTGCAAAACCTAATGGGTGCGATCATACCAGCAATAATGCACCGGATCCCAT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCAT
* * * * * *
4894 CAGAACTCCGCATTCAAGCGTGCTT-GGCAACATTAGTACTAGGATGCGTGACCTCCTGCGAAGT
66 CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
* * * * * *
4958 CCTTGAGTT-CACCGCTC-TTTTTTATTATTTTATTAATCGTATGTTTGAATTTTG-GTAAATAA
131 CCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCG-AAATAA
* * * * *
5020 TAATACTTCTTGGGAAACATGAACATTATTAGCGTACTATGCATTTTTACTTTA-TTTTTTATTC
195 TAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTC
* * * *
5084 GCAAAACATGTCTTCCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCATGAATGCGA
260 GCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGA
*
5149 TGAAAGGAAGCCTTT
325 TGAAAGGTAGCCTTT
* * ** * ** *
5164 ATGTAAATAGATTGAGAAAAACCTAATAGGTACTTTCATACCAGCCCTAATGCACTGGATCCCAT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCAT
* * *
5229 CAGAACTCCGCAATCAAGCGTGATTGGGCGAGAGTAGTACTAGGATTGGTGACCTCCTGGGAAGT
66 CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
* * *
5294 CCTCGTGTTGCACCCCT-TATTATTATTATTTT-TTTATCATAAGTTTGCATTTTGCGAAATAAT
131 CCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAAT
* * *
5357 AATGCTTCTTGGGAAAAATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTTG
196 AATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCG
* * * * * *
5422 CAAAACACGTCTACCCGAGCATTATTTGGGTATATTTACCTTCGAATTCGAGGCACAAATACGAT
261 CAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGAT
*
5487 GAAAGGAAGCCTTT
326 GAAAGGTAGCCTTT
* * * * * * *
5501 ATGTAAATATATTGCGCAAAACCTAACGGTTGCGTTCATACCAACAC-AATGCACCGTAT-CTAT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCAT
* * * * *
5564 CAGAACTCTGCAGTCAAGCGTGATTGGGCGAGAGTAGTACTAGGATGAGTGACTTTCTGGGAAGT
66 CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
* * * * **
5629 CCTCGTGCTGCACCCCT-ATTTATTATTATTTT-TTTATCGTAAGTTTGCATATTGAAAAATAAT
131 CCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAAT
* ** * * * *
5692 AACGCTTATTAAGAAAGATTAACATTATTAGCTTACTTTGCA-TTTTATTTAATGTTTTTATTCG
196 AATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCG
* * * *
5756 CAAAATACGTCTACCCGAGTTTTATTTGGGTATATTTGCATTTAAAATTCGAGGCACGAATGTGA
261 CAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACA-TTCAAATTCGAGGCACGAATGCGA
*
5821 TGAAAGGTAGCTTTT
325 TGAAAGGTAGCCTTT
* * * * * * * *
5836 ATGTTAATAGATTGCGCAAATCC-AAGCAGGTGCGGTCAAACTAGCACTAATGCACCGGATCTCA
1 ATGTAAATAGATTGCGCAAAACCTAA-CGGGTGCGATCATACCAGCACTAATGCACTGGATCCCA
* * * * * *
5900 TCAGAACACTGCAATCAAGTGTGCTTGGGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAG
65 TCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG
* * * * *
5965 TCCTTGTGTTGCACCACTC-TTTTTTATTATTTTATTTATCCTAAGTTTGTATTTTGTGAAATAA
130 TCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAA
6029 TAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTA-TTTTTTATTC
195 TAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTC
* * * * *
6093 GCAAAATACCTCTACCCGAGCATTATTTGGGTA-AGTTTACATTCAAATTTGAGGCACGAATACT
260 GCAAAATACGTCTACCCGAGCTTTATTTGGGTATA-TTTACATTCAAATTCGAGGCACGAATGCG
*
6157 ATGAAAGGCAGCCTTT
324 ATGAAAGGTAGCCTTT
* * * * *
6173 ATGTTAGTAGATTGCGCAAAACCTAACGGGTGAGATCATACCAGCAATAATGCA-TCGGATCCCG
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACT-GGATCCCA
* * *
6237 TCAGAACTCCGTAGTCAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTCGGAAG
65 TCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG
* * ** * **
6302 ACCTCGTGTTGCACCCCTCTTTTTTGTTATTATTTTGTTTATTTTAATTTTGCATTTTGTAAAAT
130 TCCTCGTGTTGCACCCCTC-TTTTT-TTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAAT
*
6367 AATAATGCTTATTTGGAAACATTAACATTATTAGCGTACTTTGCATTTTTTATTTTATTTTTTTA
193 AATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCA-TTTTTATTTTATTTTTTTA
* * * * * * *
6432 TTCGCGAAGTACGTCTACCCAAGCTTTATTTGTGTATATTTACATTCAAATTCAAGGCACTAATA
257 TTCGCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATG
* *
6497 CGATGAAAGATAGTCTTT
322 CGATGAAAGGTAGCCTTT
* * * * *
6515 ATGTAAATAGATTGCGCGAAATCCTAACAGGTGTGTTCATACCAGCACTAATGCACCGGATCCCA
1 ATGTAAATAGATTGCGC-AAAACCTAACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCA
* * * * **
6580 TCAGAACTCCCCAGTCAAGCGTGTTTGGGCAAGAGTAGTACTAGGATAGGTGACCTCCTCAGAAG
65 TCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG
* *
6645 ACCTCGTGTTGCAGCCCTC-TTTTTTATTA--TTA---A---T---TTTGCATTTTGCGAAATAA
130 TCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAA
**
6698 TAATGCTTATT-TCAAAGCATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATT
195 TAATGCTTATTGGGAAA-CATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATT
* * * * *
6762 CGCGAAGTACGTCTA-CCGAGCTTTTTTTGGGTATATTTACAATCAAATTTGAGGCACGAATGCG
259 CGCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCG
6826 ATGAAAGGTAGCCTTT
324 ATGAAAGGTAGCCTTT
* * * * * * *
6842 -TGGTTAATAGATTGCGCAAAACCTAGCGGGTGCGGTGATATCTA-CGCTAATGCACCGGATCCC
1 AT-GTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATA-CCAGCACTAATGCACTGGATCCC
* * * * * *
6905 TTCAGAATTCTGCAGTCAAGTGTGTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAA
64 ATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAA
* * *
6970 GTTCTTGTGTTGCACCTCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATA
129 GTCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATA
* * * * *
7035 ACAATGCTTATTTGGAAACATTAACATTATTAGTGTACTTTTGCATTTTTATATTCTTTTTTTAT
194 ATAATGCTTATTGGGAAACATTAACATTATTAGCGTAC-TTTGCATTTTTATTTTATTTTTTTAT
* * * *
7100 TTGCAAAGTACGTCTACTCGAGCTTTATTTGGGTATATTTATATTCAAAATTCGAGGCACGAATG
258 TCGCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTC-AAATTCGAGGCACGAATG
* *
7165 TGATGAAAGGTAGCTTTT
322 CGATGAAAGGTAGCCTTT
* * ** * **
7183 ATGTTAATAAATTGCGCAAAACCTAGTGGGTGC-AGTCATACCAACACTAATGCACCCGATCCCA
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGA-TCATACCAGCACTAATGCACTGGATCCCA
* * * * * *
7247 TCAGAACTCCGCAATTAA-CTGTGCTTGGACGAGAGTAGTACTAAGATGAGTGACCTCCTGGGAT
65 TCAGAACTCCGCAGTCAAGC-GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAA
* * * * *
7311 GTCCTCGTGTTGCA-CCCTC-CTTTTTAAT-TTTTAATTGTCGTAAGTTTGCATTTTTCGAAATA
129 GTCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATA
* *
7373 ATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCAATTTTATTTTATTTTTTTGTT
194 ATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATT
* * * * * ** *
7438 CTCTAAATATGTCCACCCGAGCATTATTTGGGTATATTTACATTTGAATTCGA-GCAACGAATAC
259 CGCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGC-ACGAATGC
*
7502 GATGAAAGGTAGCTTTT
323 GATGAAAGGTAGCCTTT
* *
7519 ATGTAAATAGATTGCGCAAAATCCTAACGGTTGCGTTCATACC
1 ATGTAAATAGATTGCGCAAAA-CCTAACGGGTGCGATCATACC
7562 TCCTTGGAAG
Statistics
Matches: 6050, Mismatches: 922, Indels: 257
0.84 0.13 0.04
Matches are distributed among these distances:
319 27 0.00
320 169 0.03
322 3 0.00
324 57 0.01
326 107 0.02
327 82 0.01
328 198 0.03
329 193 0.03
330 18 0.00
331 3 0.00
332 2 0.00
333 156 0.03
334 243 0.04
335 474 0.08
336 275 0.05
337 1081 0.18
338 1052 0.17
339 726 0.12
340 687 0.11
341 170 0.03
342 209 0.03
343 118 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (339 bp):
ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCAT
CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
CCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAAT
AATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCG
CAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGAT
GAAAGGTAGCCTTT
Found at i:3811 original size:672 final size:672
Alignment explanation
Indices: 122--7561 Score: 8585
Period size: 672 Copynumber: 11.1 Consensus size: 672
112 GATCGCACCC
** * * * *
122 ATGTAAATAGATTATGCAAAACCTAACGGGTGTGTTCTTACCAACACTCATGCA-CTGGATCCCA
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGTTCATACCAGCACTAATGCATC-GGATCCCA
* * * * * * *
186 TCAAAACTCTGCAGTTAAGCGTGATTGGGTTG-GAATAGTATTAGGATGGGTGACCTCCTAGGAA
65 TCAGAACTCCGCAGTCAAGCGTGCTTGGG-CGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAA
* * * * * *
250 TTCCTCATGTTGCACCCCTCTTTTTTATTATTATTTTATTTAGCATAATTTTGCATTTTGAAAAA
129 GTCCTCGTGTTGCACCCCTC-TTTTT-TTATTATTTTATTTATCGTAAGTTTGCATTTTGCAAAA
* * *
315 TAATAATGCTTCTTGGGAAGCATGAAAATTATTAGCTTACTTTGCATTTTTATTTTATTTTTTTT
192 TAATAATGCTTCTTGGGAAACATGAACATTATTAGCGTACTTTGCATTTTTATTTTA-TTTTTTT
* * *
380 ATTTGCAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAAT
256 ATTCGCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAAT
** * * *
445 GCGATGAAAGGTAGCCTTTATGTTAATAGATTGCATAAAACCAAATGGGTGCGATCATATCAGCA
321 GCGATGAAAGGTAGCCTTTATGTTAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCA
* * * * *
510 TTAATGCACTGGATCCCATCAGAACTCCGTAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGAT
386 CTAATGCACCGGATCCCATCAGAACTCTGCAATCAAGCGTGCTTGGGCGAGAGTAGTACTAGGAT
** * *
575 GGGCAACCTCCTGGGAAGTCCTCGTGTTGCACCCCACTTTTTTTATTATTTTATTTATCGTAATT
451 GGGTGACCTCCTGGGAAGTCCTCGTGTTGCA-CCCTCTTTTTTTATTATTTTATTTATCGTAAGT
* *
640 TTGCATTTTGCGAAACAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTACATTTT
515 TTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCA-TTT
* *
705 ATTTTATTTTTTATTCACAAAATACGTCTACCCGAGCATTATTTAGGTATATTTACATTTGAATT
579 -TTTT-TTTTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTTGAATT
* * *
770 CGAGGCACGAATATGATGAAAGGTAACCTTC
642 CGAGGCACGAATACGATGAAAGGTAGCCTTT
* * * * * * *
801 ATGTAAATAGATTGCACAAAGTCCTAACGGGTGCGTTCATTCCAACACTAGTGCATCAGATTCCA
1 ATGTAAATAGATTGCGCAAA-ACCTAACGGGTGCGTTCATACCAGCACTAATGCATCGGATCCCA
* * * * * ** *
866 TTAGAATTCTGCAGTCAAGCGTGCTTAGGCGAGAGTAGTATTAGGATGGGTGACCTTTTGGGAAG
65 TCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAG
* * *
931 TTCTCGTGTTGCACCCCTCTTTTTTT-TTATTTTTTTTATCGTAAGTTTGCATTTTGCGAAATAA
130 TCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCAAAATAA
* * * *
995 CAATGCTTCTTGGGAAACATGAAAATTATTAGCGTACTTTGCATTTATATTTTATTTTTTTATTT
195 TAATGCTTCTTGGGAAACATGAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTC
* * * *
1060 GCAAAACATGTCCT-CCCAAGCTTTATTTGGGTATATTTACATTTAAATTCGAGGCACGAATGCG
260 GCAAAATACGT-CTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCG
* * * * *
1124 ATGAAAGATAGCCTTTATGTTAATAGATTGAGCAAAACCTAAAGGGTGCAATCATACCAGCAATA
324 ATGAAAGGTAGCCTTTATGTTAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTA
** * *
1189 ATGCATTGGATCCCATCAAAACTCTGCAATCAAGCGTGCTTGGGCGAGAGTAGTACAAGGATGGG
389 ATGCACCGGATCCCATCAGAACTCTGCAATCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGG
1254 TGACCTCCTGGGAAGTCCTCGTGTTGCACCC-CTCTTTTTTATTATTTTATTTATCGTAAGTTT-
454 TGACCTCCTGGGAAGTCCTCGTGTTGCACCCTCT-TTTTTTATTATTTTATTTATCGTAAGTTTG
* *
1317 CAATTTTGCAAAATAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGTATTTTAT
518 C-ATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCA-TTT-T
*
1382 TTGATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTCGAATTC
580 TT--TTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTTGAATTC
*
1447 AAGGCACGAATACGATGAAAGGTAGCCTTT
643 GAGGCACGAATACGATGAAAGGTAGCCTTT
* * * **
1477 ATGTAAATAGATTGCACAAATCCTAACGGGTGCGTTCATACCAGCACTAATTCATCGGATCCTGT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGTTCATACCAGCACTAATGCATCGGATCCCAT
* ** * * * * * * *
1542 CAGAATTCTTCAGTTAAGCGTGCATGGGTTG-GAATAGTACTAGGATGGGTGACATCCTAAGAAA
66 CAGAACTCCGCAGTCAAGCGTGCTTGGG-CGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAG
* * * * **
1606 TCCTCTTGTTGCA-CCC-CTTTTTTTATTATTTCATTTATCGTAATTTTGCGTTTTGCGGAATAA
130 TCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCAAAATAA
* *
1669 TAATGCTTCTTGGGAAGCATGGAA-ATTATTAGCGTACTTTTCATTTTTATTTTATTTTTTTATT
195 TAATGCTTCTTGGGAAACAT-GAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATT
* ** * * *
1733 CTCAAAATATATCTACCCGAGCATTATTTAGGTATATTTACATTCAAATTCGAGGCATGAATGCG
259 CGCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCG
*
1798 ATGAAAGGTAGCCTTTATGTTAATAGATTGCACAAAA-CTAAACGGGTGCGATCATACCAGCACT
324 ATGAAAGGTAGCCTTTATGTTAATAGATTGCGCAAAACCT-AACGGGTGCGATCATACCAGCACT
* * * *
1862 AATGCATCGGATCCCATCAGAACTTTGCAGTCAAACGTGCTTGGGCGAGAGTAGTACTAGGATGG
388 AATGCACCGGATCCCATCAGAACTCTGCAATCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGG
* * * *
1927 GCGACCTCTTGGGAAGTCCTCGTGTTGCATCCCTCTTTTTTTATTATTTTATTTATCATAATTTT
453 GTGACCTCCTGGGAAGTCCTCGTGTTGCA-CCCTCTTTTTTTATTATTTTATTTATCGTAAGTTT
* * * *
1992 GCATTTTGCGAAATAATAATGCTTATTGGGAATCATTAACATTATTAACATACTTTGTATTTTTA
517 GCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCA--TTT-
* * * * * *
2057 TTTTATTTTTTATTCGAAAAATACGTCCACTCGAGAATTATTTGGGTATATTTATATTCGAATTC
579 TTTT-TTTTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTTGAATTC
2122 GAGGCACGAATACGATGAAAGGTAGCCTTT
643 GAGGCACGAATACGATGAAAGGTAGCCTTT
* * * *
2152 ATATAAATAGATTGCGCAAATCCTAACGGGTACGTTCATACCAGCACTAATGCATTGGATCCCAT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGTTCATACCAGCACTAATGCATCGGATCCCAT
* * * * * *
2217 AAGAATTCCGCAATCAAGCGTGCTTGGGCGAGAGTAGTA-TAAGGATGGGTGATCTTCTAGGATG
66 CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACT-AGGATGGGTGACCTCCTAGGAAG
*
2281 TCCTCGTGTTGCACCCCTCTTTTATTATTATTTTATTTATCGTAAGTTTGCATTTTG-AGAAATA
130 TCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCA-AAATA
* * *
2345 TTAATGCTTCTTGGGAAACAAGAAAATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATT
194 ATAATGCTTCTTGGGAAACATGAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATT
* * * *
2410 CGTAAAATACGTCTTCCCGAGCTTTATTTGGGTATATTTACATTCAAATTAGAGGCACGAATGTG
259 CGCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCG
* * * * * *
2475 ATTAAAGGTAGCCTTTATGTAAATAGATTGCGTAAAACCTAACGAGTGCGATAATACCAGCGCTA
324 ATGAAAGGTAGCCTTTATGTTAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTA
** * * * * * * *
2540 ATGCACTAGATCCCATCAGAACACTGCAGTTATGGGTGGTTGGGCGAGAGTAGTAATAGGATGGG
389 ATGCACCGGATCCCATCAGAACTCTGCAATCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGG
* * * * * *
2605 TGATCTCCTAGAAAGTCCTCATGTTGCACACCTCTTTTCTTTATTATTTTATTTATTGTAAATTT
454 TGACCTCCTGGGAAGTCCTCGTGTTGCAC-CCTCTTTT-TTTATTATTTTATTTATCGTAAGTTT
* * * **
2670 GCATTTTGCAAAATAATAATGCTTGTTGGGAAAGAAGAACATTATTAGCGTACTTTGCATTTTTA
517 GCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTT-
* * * *
2735 CTTTATTTTTGAATTAGCAAAATACGTCTTCCCGAGCTTTATTTGGGTATATTTAC-TTTCAAAT
581 -TTT-TTTTT--ATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTT-GAAT
* *
2799 TCGAGGCACGAATGCAATGAAAGGTAGCCTTT
641 TCGAGGCACGAATACGATGAAAGGTAGCCTTT
* * * * * *
2831 ATGTAAATAGATTGCGCAAAACCTAGCAGCTGCGATCATACCAGCGCAAATGCA-CTGGATCCCA
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGTTCATACCAGCACTAATGCATC-GGATCCCA
* * * * * *
2895 TTAGAACTCCACAGTTAAGCGTGCTTAGGCAAGAGTAGTACTAGGATGGGTGTCCTCCTAGGAAG
65 TCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAG
*
2960 TCCTCGTGTTGCACCCCTC--------TT-TTTT-TTTATCGTAAGTTTGCATTTTG-AGAAATG
130 TCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCA-AAATA
* *
3014 ATAATGATTCTTGGGAAACATGAACATTATTAGCGTACTTTGCTTTTTTATTTTA-TTTTTTATT
194 ATAATGCTTCTTGGGAAACATGAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATT
* * *
3078 CGCAAAATACGTCTTCCCGAGCTTTATTTGGGTATATGTACATTCAAATTCGAGACACGAATGCG
259 CGCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCG
* * * * *
3143 ATGAAAGATAGCCTTTATGTTAATAGATTGCTCAAAATCTAACGGGTGTGATCATACTAGCACTA
324 ATGAAAGGTAGCCTTTATGTTAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTA
* * * *
3208 ATGCACCGTATCCCATCAGAACTCCGCAATCAAAGCATGCTTGGGCGAGAGTAGTACTAGGATTG
389 ATGCACCGGATCCCATCAGAACTCTGCAATC-AAGCGTGCTTGGGCGAGAGTAGTACTAGGATGG
**
3273 GTGACCTCCTAAGAAGTCCTCGTGTTGCATCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTT
453 GTGACCTCCTGGGAAGTCCTCGTGTTGCA-CCCTCTTTTTTTATTATTTTATTTATCGTAAGTTT
* * * * *
3338 CCATTTTACGAAATAATAATGTTTATTGGGAAACTTTAAAATTATTAGCGTACTTTGCA-TTTTT
517 GCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTT
* * * * * *
3402 TTTTTTTATTCGCAAAGTACGTTTACCTGAGCATTAATTGGGTGTATTTACATTTGAATTTGAGG
582 TTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTTGAATTCGAGG
*
3467 CACGAATATGATGAAAGGTAGCCTTT
647 CACGAATACGATGAAAGGTAGCCTTT
* * * * * * * * * **
3493 ACGT-AATCGATTGGGCAAAATACTAACGGGTGCGTACATACCAGTATTAAGGCAACACATCCCA
1 ATGTAAATAGATTGCGCAAAA-CCTAACGGGTGCGTTCATACCAGCACTAATGCATCGGATCCCA
* * *
3557 TCAGAACTCCGCAGTCAAGCGTGCTTGGGCGACAGTAGTACTAAGATGGGTGACCTCTTAGGAAG
65 TCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAG
* *
3622 TCCTCATGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTCCATTTTGCAAAATAA
130 TCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCAAAATAA
* * * *
3687 TAATGCTTATTGGGAAACATTAACATTATTAGCATACTTTTCATTTTTATTTTA-TTTTTTATTC
195 TAATGCTTCTTGGGAAACATGAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTC
* **
3751 GCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATATGA
260 GCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGA
* * * * * * * *
3816 TGAAAGGTAGCCTTTATGTAAATAGATTGAGCAAATCCTAACGGGTGCGTTTATACCAACAGTAT
325 TGAAAGGTAGCCTTTATGTTAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAA
* * * * * * *
3881 TGCACCGGATCACATCAAAATTATGCAATCAAGCGTGCTTGGGCGAGAGTAGTATTATGTTGGGT
390 TGCACCGGATCCCATCAGAACTCTGCAATCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGT
* * * *
3946 GAACTCTTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTTATATTATTTTATTTCTCGTATGTTTG
455 GACCTCCTGGGAAGTCCTCGTGTTGCA-CCCTCTTTTTT-TATTATTTTATTTATCGTAAGTTTG
* * * * *
4011 CAGTTTGCGAAATAATAATGCTTCTTGGGAAACATGAATATTATTAGCGTACTTTTCATTATTAT
518 CATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGC---ATT-T
* * * * *
4076 TTTATTTTTTTATTCACAAAATACGACCT-CTCGAGCTTTATTTGGGTATATTTACATTTAAATT
579 TTT-TTTTTTTATTCGCAAAATACG-TCTACCCGAGCATTATTTGGGTATATTTACATTTGAATT
* * *
4140 CGAGGCGCGAATGCGATGAAAGGTAGCCTAT
642 CGAGGCACGAATACGATGAAAGGTAGCCTTT
* * * * *
4171 ATGTAAATAGATTGCGCAAAACTTAACGGGTGTGGTCATACCAGCACTAAAGC-GCTGGATCCCA
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGTTCATACCAGCACTAATGCATC-GGATCCCA
* * * *
4235 TCAGAACTCCGCAATCAAGTGTTCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG
65 TCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAG
* ** * * *
4300 TTCTCGTGTTGCACCCCAATTTTTCTATTATTTTATTTATCATAAGTTTGCATTTTGCGAAATAA
130 TCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCAAAATAA
** *
4365 TAATGCTTAATGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTC
195 TAATGCTTCTTGGGAAACATGAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTC
* * * * *
4430 GTAAAATACGTCTACCCCAGC---A--TGGGTATATTTACATTCGAATTCGAGTCACGAATACGA
260 GCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGA
* * *
4490 TGAAAGGTAGCCTTTAT-TTAAATAGATT----AAATCCTAACTGGTGTG-T--T-----CA--A
325 TGAAAGGTAGCCTTTATGTT-AATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTA
* * * * * **
4540 ATGCATCGGATCCCATTAGAATTCTGCAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGTTTGGG
389 ATGCACCGGATCCCATCAGAACTCTGCAATCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGG
* * * *
4605 TGAACTCCTGGAAAGTCCTCGTGTTACACCCCTCTTTTTTTATTATTTAATTTATCGTAAGTTTG
454 TGACCTCCTGGGAAGTCCTCGTGTTGCA-CCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTG
* * * * * * *
4670 TATTTTGCGAAAAAATAATGCTTCTTAGGAAACATGAAAATTATTAGCGTGCTTTGCACTTTTAT
518 CATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCA--TTT-T
* * * * * * *
4735 TTTATTTTTTATTCACAAAACACGTCTTCCCGAGCTTTATTCGAGTATATTTACATTTAAATTCG
580 TTT-TTTTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTTGAATTCG
* *
4800 AGGCACGAATGCGATGAATGGTAGCCTTT
644 AGGCACGAATACGATGAAAGGTAGCCTTT
* * * * * *
4829 ATGTTAATAGATTGTGCAAAACCTAATGGGTGCGATCATACCAGCAATAATGCACCGGATCCCAT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGTTCATACCAGCACTAATGCATCGGATCCCAT
* * * * *
4894 CAGAACTCCGCATTCAAGCGTGCTT-GGCAACATTAGTACTAGGATGCGTGACCTCCT-GCGAAG
66 CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAG-GAAG
* * * * * * **
4957 TCCTTGAGTT-CACCGCTC-TTTTTTATTATTTTATTAATCGTATGTTTGAATTTTGGTAAATAA
130 TCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCAAAATAA
* * *
5020 TAATACTTCTTGGGAAACATGAACATTATTAGCGTACTATGCATTTTTACTTTA-TTTTTTATTC
195 TAATGCTTCTTGGGAAACATGAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTC
* * * *
5084 GCAAAACATGTCTTCCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCATGAATGCGA
260 GCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGA
* * * * ** * ** *
5149 TGAAAGGAAGCCTTTATGTAAATAGATTGAGAAAAACCTAATAGGTACTTTCATACCAGCCCTAA
325 TGAAAGGTAGCCTTTATGTTAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAA
* * * *
5214 TGCACTGGATCCCATCAGAACTCCGCAATCAAGCGTGATTGGGCGAGAGTAGTACTAGGATTGGT
390 TGCACCGGATCCCATCAGAACTCTGCAATCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGT
* *
5279 GACCTCCTGGGAAGTCCTCGTGTTGCACCC-CTTATTATTATTATTTT-TTTATCATAAGTTTGC
455 GACCTCCTGGGAAGTCCTCGTGTTGCACCCTCTT-TTTTTATTATTTTATTTATCGTAAGTTTGC
* *
5342 ATTTTGCGAAATAATAATGCTTCTTGGGAAAAATTAACATTATTAGCGTACTTTGCATTTTTATT
519 ATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCA---TT-TT
* * * *
5407 TTATTTTTTTATTTGCAAAACACGTCTACCCGAGCATTATTTGGGTATATTTACCTTCGAATTCG
580 TT-TTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTTGAATTCG
* *
5472 AGGCACAAATACGATGAAAGGAAGCCTTT
644 AGGCACGAATACGATGAAAGGTAGCCTTT
* * * * * *
5501 ATGTAAATATATTGCGCAAAACCTAACGGTTGCGTTCATACCAACAC-AATGCACCGTAT-CTAT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGTTCATACCAGCACTAATGCATCGGATCCCAT
* * * * * *
5564 CAGAACTCTGCAGTCAAGCGTGATTGGGCGAGAGTAGTACTAGGATGAGTGACTTTCTGGGAAGT
66 CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGT
* * * * *
5629 CCTCGTGCTGCACCCCT-ATTTATTATTATTTT-TTTATCGTAAGTTTGCATATTGAAAAATAAT
131 CCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCAAAATAAT
* * ** * * * * *
5692 AACGCTTATTAAGAAAGATTAACATTATTAGCTTACTTTGCA-TTTTATTTAATGTTTTTATTCG
196 AATGCTTCTTGGGAAACATGAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCG
* * * *
5756 CAAAATACGTCTACCCGAGTTTTATTTGGGTATATTTGCATTTAAAATTCGAGGCACGAATGTGA
261 CAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACA-TTCAAATTCGAGGCACGAATGCGA
* * * * * *
5821 TGAAAGGTAGCTTTTATGTTAATAGATTGCGCAAATCC-AAGCAGGTGCGGTCAAACTAGCACTA
325 TGAAAGGTAGCCTTTATGTTAATAGATTGCGCAAAACCTAA-CGGGTGCGATCATACCAGCACTA
* * * *
5885 ATGCACCGGATCTCATCAGAACACTGCAATCAAGTGTGCTTGGGTGAGAGTAGTACTAGGATGGG
389 ATGCACCGGATCCCATCAGAACTCTGCAATCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGG
* * *
5950 TGACCTCTTGGGAAGTCCTTGTGTTGCACCACTC-TTTTTTATTATTTTATTTATCCTAAGTTTG
454 TGACCTCCTGGGAAGTCCTCGTGTTGCACC-CTCTTTTTTTATTATTTTATTTATCGTAAGTTTG
* *
6014 TATTTTGTGAAATAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTAT
518 CATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCA--TTT-T
* ** *
6079 TTTATTTTTTATTCGCAAAATACCTCTACCCGAGCATTATTTGGGTA-AGTTTACATTCAAATTT
580 TTT-TTTTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATA-TTTACATTTGAATTC
* *
6143 GAGGCACGAATACTATGAAAGGCAGCCTTT
643 GAGGCACGAATACGATGAAAGGTAGCCTTT
* * * * * *
6173 ATGTTAGTAGATTGCGCAAAACCTAACGGGTGAGATCATACCAGCAATAATGCATCGGATCCCGT
1 ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGTTCATACCAGCACTAATGCATCGGATCCCAT
* * * *
6238 CAGAACTCCGTAGTCAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTCGGAAGA
66 CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGT
* ** * *
6303 CCTCGTGTTGCACCCCTCTTTTTTGTTATTATTTTGTTTATTTTAATTTTGCATTTTGTAAAATA
131 CCTCGTGTTGCACCCCTC-TTTTT-TTATTATTTTATTTATCGTAAGTTTGCATTTTGCAAAATA
* * *
6368 ATAATGCTTATTTGGAAACATTAACATTATTAGCGTACTTTGCATTTTTTATTTTATTTTTTTAT
194 ATAATGCTTCTTGGGAAACATGAACATTATTAGCGTACTTTGCA-TTTTTATTTTATTTTTTTAT
* * * * * * *
6433 TCGCGAAGTACGTCTACCCAAGCTTTATTTGTGTATATTTACATTCAAATTCAAGGCACTAATAC
258 TCGCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGC
* * * * * * *
6498 GATGAAAGATAGTCTTTATGTAAATAGATTGCGCGAAATCCTAACAGGTGTGTTCATACCAGCAC
323 GATGAAAGGTAGCCTTTATGTTAATAGATTGCGC-AAAACCTAACGGGTGCGATCATACCAGCAC
** * * * *
6563 TAATGCACCGGATCCCATCAGAACTCCCCAGTCAAGCGTGTTTGGGCAAGAGTAGTACTAGGATA
387 TAATGCACCGGATCCCATCAGAACTCTGCAATCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
** *
6628 GGTGACCTCCTCAGAAGACCTCGTGTTGCAGCCCTC-TTTTTTATTA--TTA---A---T---TT
452 GGTGACCTCCTGGGAAGTCCTCGTGTTGCA-CCCTCTTTTTTTATTATTTTATTTATCGTAAGTT
**
6681 TGCATTTTGCGAAATAATAATGCTTATT-TCAAAGCATTAACATTATTAGCGTACTTTGCATTTT
516 TGCATTTTGCGAAATAATAATGCTTATTGGGAAA-CATTAACATTATTAGCGTACTTTGCA---T
* * * * * **
6745 TATTTTATTTTTTTATTCGCGAAGTACGTCTA-CCGAGCTTTTTTTGGGTATATTTACAATCAAA
577 T-TTTT-TTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTTGAA
* *
6809 TTTGAGGCACGAATGCGATGAAAGGTAGCCTTT
640 TTCGAGGCACGAATACGATGAAAGGTAGCCTTT
* * * * * * *
6842 -TGGTTAATAGATTGCGCAAAACCTAGCGGGTGCGGTGATATCTA-CGCTAATGCACCGGATCCC
1 AT-GTAAATAGATTGCGCAAAACCTAACGGGTGCGTTCATA-CCAGCACTAATGCATCGGATCCC
* * * * *
6905 TTCAGAATTCTGCAGTCAAGTGTGTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAA
64 ATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAA
* * * *
6970 GTTCTTGTGTTGCACCTCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATA
129 GTCCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCAAAATA
* * * * * * *
7035 ACAATGCTTATTTGGAAACATTAACATTATTAGTGTACTTTTGCATTTTTATATTCTTTTTTTAT
194 ATAATGCTTCTTGGGAAACATGAACATTATTAGCGTAC-TTTGCATTTTTATTTTATTTTTTTAT
* * * *
7100 TTGCAAAGTACGTCTACTCGAGCTTTATTTGGGTATATTTATATTCAAAATTCGAGGCACGAATG
258 TCGCAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTC-AAATTCGAGGCACGAATG
* * * ** *
7165 TGATGAAAGGTAGCTTTTATGTTAATAAATTGCGCAAAACCTAGTGGGTGC-AGTCATACCAACA
322 CGATGAAAGGTAGCCTTTATGTTAATAGATTGCGCAAAACCTAACGGGTGCGA-TCATACCAGCA
* * * * *
7229 CTAATGCACCCGATCCCATCAGAACTCCGCAATTAA-CTGTGCTTGGACGAGAGTAGTACTAAGA
386 CTAATGCACCGGATCCCATCAGAACTCTGCAATCAAGC-GTGCTTGGGCGAGAGTAGTACTAGGA
* * * * * *
7293 TGAGTGACCTCCTGGGATGTCCTCGTGTTGCACCCTC-CTTTTTAAT-TTTTAATTGTCGTAAGT
450 TGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTCTTTTTTTATTATTTTATTTATCGTAAGT
*
7356 TTGCATTTTTCGAAATAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCAATTT
515 TTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGC-A--T
* * * * *
7421 TATTTTATTTTTTTGTTCTCTAAATATGTCCACCCGAGCATTATTTGGGTATATTTACATTTGAA
577 T-TTTT-TTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTTGAA
*
7486 TTCGA-GCAACGAATACGATGAAAGGTAGCTTTT
640 TTCGAGGC-ACGAATACGATGAAAGGTAGCCTTT
*
7519 ATGTAAATAGATTGCGCAAAATCCTAACGGTTGCGTTCATACC
1 ATGTAAATAGATTGCGCAAAA-CCTAACGGGTGCGTTCATACC
7562 TCCTTGGAAG
Statistics
Matches: 5783, Mismatches: 832, Indels: 294
0.84 0.12 0.04
Matches are distributed among these distances:
654 26 0.00
655 86 0.01
656 7 0.00
657 44 0.01
658 160 0.03
659 131 0.02
660 95 0.02
661 14 0.00
662 174 0.03
663 15 0.00
664 6 0.00
665 3 0.00
666 14 0.00
667 237 0.04
668 279 0.05
669 372 0.06
670 86 0.01
671 297 0.05
672 738 0.13
673 177 0.03
674 427 0.07
675 478 0.08
676 424 0.07
677 474 0.08
678 434 0.08
679 307 0.05
680 273 0.05
681 5 0.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (672 bp):
ATGTAAATAGATTGCGCAAAACCTAACGGGTGCGTTCATACCAGCACTAATGCATCGGATCCCAT
CAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGT
CCTCGTGTTGCACCCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCAAAATAAT
AATGCTTCTTGGGAAACATGAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCG
CAAAATACGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGAT
GAAAGGTAGCCTTTATGTTAATAGATTGCGCAAAACCTAACGGGTGCGATCATACCAGCACTAAT
GCACCGGATCCCATCAGAACTCTGCAATCAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTG
ACCTCCTGGGAAGTCCTCGTGTTGCACCCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCAT
TTTGCGAAATAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCATTTTTTTTTT
TTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTTGAATTCGAGGCACG
AATACGATGAAAGGTAGCCTTT
Found at i:7962 original size:932 final size:938
Alignment explanation
Indices: 6667--8483 Score: 2538
Period size: 932 Copynumber: 1.9 Consensus size: 938
6657 AGCCCTCTTT
* * * * * *
6667 TTTATTATTAATTTTGCATTTTGCGAAATAATAATGCTTATTTCAAAGCATTAACATTATTAGCG
1 TTTATTATTAAGTTTCCATGTTGCGAAATAATAATCCTCATTTCAAAGCATTAACATTATTAGCA
* * *
6732 TACTTTGCATTTTTATTTTATTTTTTTATTCGCGAAGTACGTCTACCGAGCTTTTTTTGGGTATA
66 TACTTTGC-----TA-TTTATTTTTTTATTCGCGAAATACGTCTACCGAGCTCTATTTGGGTATA
* *
6797 TTTACAATCAAATTTGAGGCACGAATGCGATGAAAGGTAGCCTTTTGGTTAATAGATTGCGCAAA
125 TTTACAATCAAATTCGAGGCACGAATGCGATGAAAGGTAGCCTTTTGGTTAATAGATTGCACAAA
* * * * *
6862 ACCTAGCGGGTGCGGTGATATCTACGCTAATGCACCGGATCCCTTCAGAATTCTGCAGTCAAGTG
190 ACCTAGCGGGTGCGGTGATATCCACACTAATGCACCGGATCCCATCAGAACTCTGCAGACAAGTG
* * * * * * *
6927 TGTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTTCTTGTGTTGCACCTCTCTT
255 TGCTTGGGCGAGAGTAGTACTAGGACGGGTGAACTCCTAGGAAGTCCTCGTGCTGCACCCCTCTT
* * *
6992 TTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAACAATGCTTATTTGGAAACATT
320 TTTTTATTATTCTATTTATCGTAAGTTTGCAATTTGCGAAATAACAATGCTTATTGGGAAACATT
* * * * * *
7057 AACATTATTAGTGTACTTTTGCATTTTTATATTCTTTTTTTATTTGCAAAGTACGTCTACTCGAG
385 AAAATTATTAGCGTAC-TTTGCATTTTTATATTATTTTCTTATTCGCAAA-TACGTCTACCCGAG
* * * * *
7122 CTTTATTTGGGTATATTTATATTCAAAATTCGAGGCACGAATGTGATGAAAGGTAGCTTTTATGT
448 CATCATTTGGGTATATTTACATTC-AAATTCGAGGCACGAATATGATGAAAGGTAGCATTTATGT
* **
7187 TAATAAATTGCGCAAAA-CCTAGTGGGTGCAG-TCATACCAACACTAATGCACCCG-ATCCCATC
512 AAATAAATTGCGCAAAATCCTAACGGGTGC-GTTCATACCAACACTAATGCA-CCGAATCCCATC
* * **
7249 AGAACTCCGCAATTAA-CTGTGCTTGGACGAGAGTAGTACTAAGATGAGTGACCTCCTGGGATGT
575 AGAACTCCACAATCAAGC-GTGCTTGGACGAGAGTAGTACTAAGATGAGTGACCTCCTGGGAAAT
* * * *
7313 CCTCGTGTTGCA-CCCTCCTTTTTA-A-T-TTTTAATTGTC-GTAAGTTTGCATTTTTCGAAATA
639 CCTCATGTTACACCCCTCCTTTTTATATTATTTTAATTATCAG-AAGTTTGCATTTTACGAAATA
* *
7373 ATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTTTGCAATTTTATTTTATTTTTTTGTT
703 ATAATGCTTATTGGGAAACATTAAAATTATTAGCGTACTTTGCAATTTTATTTTATTTTTTTATT
* * *
7438 CTCT-AAATATGTCCACCCGAGCATTATTTGGGTATATTTACATTTGAATTCGAGCAACGAATAC
768 -TCTAAAACACGTCCACCCGAGCATTATTTGGGTATATTTACATTCGAATTCGAGCAACGAATAC
* * * *
7502 GATGAAAGGTAGCTTTTATGTAAATAGATTGCGCAAAATCCTAACGGTTGCGTTCATACCTCCTT
832 AATGAAAGGTAGCCTTTATGTAAATAGATTGCACAAAATACTAACGGTTGCGTTCATACCTCCTT
7567 GGAAGACCTCGTGTTGCACCCCACTTTTTTATTATTATTTTA
897 GGAAGACCTCGTGTTGCACCCCACTTTTTTATTATTATTTTA
*
7609 TTTATT-TTAAGTTTCCATGTTGCGAAATAATAATCCTCATTTGGAAA-CATTAACATTATTAGC
1 TTTATTATTAAGTTTCCATGTTGCGAAATAATAATCCTCATTT-CAAAGCATTAACATTATTAGC
7672 ATACTTTGC-A-TT-TTTTTTTATTCGCGAAATACGTCTACCCGAGCTCTATTTGGGTATATTTA
65 ATACTTTGCTATTTATTTTTTTATTCGCGAAATACGTCTA-CCGAGCTCTATTTGGGTATATTTA
* *
7734 C-ATACAAATTCGAGGCACTAATGTGATGAAAGGTAGCC-TTTGTGTTAATAGATTGCACAAAAC
129 CAAT-CAAATTCGAGGCACGAATGCGATGAAAGGTAGCCTTTTG-GTTAATAGATTGCACAAAAC
*
7797 CTAGCGGGTGC-GTGATA-CCAGCACTAATGCACTGGATCCCATCAGAACTCTGCAGACAAGTGT
192 CTAGCGGGTGCGGTGATATCCA-CACTAATGCACCGGATCCCATCAGAACTCTGCAGACAAGTGT
*
7860 GCTTGGGCGAGAGTAGTACTAGGACGGGTGAACTCCTGGGAAGTCCTCGTGCTGCACCCCTCTTT
256 GCTTGGGCGAGAGTAGTACTAGGACGGGTGAACTCCTAGGAAGTCCTCGTGCTGCACCCCTCTTT
* *
7925 TTTTATTATTCTATTTATTGTAAGTTTGCAATTTGCGAAATAATAATGCTTATTGGGAAACATTA
321 TTTTATTATTCTATTTATCGTAAGTTTGCAATTTGCGAAATAACAATGCTTATTGGGAAACATTA
* *
7990 AAATTGTTAGCGTACTTTGCATTTTTATTTTATTTTCTTATTCGCAAATACGTCTACCCGAGCAT
386 AAATTATTAGCGTACTTTGCATTTTTATATTATTTTCTTATTCGCAAATACGTCTACCCGAGCAT
*
8055 CATTTGGGTATATTTACATTCGAATTCGAGGCACGAATATGATGAAAGGTAGCATTTATGTAAAT
451 CATTTGGGTATATTTACATTCAAATTCGAGGCACGAATATGATGAAAGGTAGCATTTATGTAAAT
* * ** * * *
8120 AGATTGCGCAAAATTCTAACGGGTGCGTTCATACCAGTACTATTGCACCGAATCCCATTAGAATT
516 AAATTGCGCAAAATCCTAACGGGTGCGTTCATACCAACACTAATGCACCGAATCCCATCAGAACT
* * * * * * *
8185 CCACAATCAAGCGTGCTTGGGCTATAGTAGTATTAGGATGGGTGACCTTCTGGGAAATCCTCATG
581 CCACAATCAAGCGTGCTTGGACGAGAGTAGTACTAAGATGAGTGACCTCCTGGGAAATCCTCATG
* *
8250 TTACACCCCTCTTTTTTATTATTATTTTAATTATCAGAAGTTTGCATTTTACGAAATAATAATTC
646 TTACACCCCTCCTTTTTA-TATTATTTTAATTATCAGAAGTTTGCATTTTACGAAATAATAATGC
* *
8315 TTATTGGGAAACATTAAAATTATTAGCGTACTTTGCAATTTTGTTTTATTTTTTTATTTGTAAAA
710 TTATTGGGAAACATTAAAATTATTAGCGTACTTTGCAATTTTATTTTATTTTTTTATTTCTAAAA
* *
8380 CACGTCTACCCGAGCATTATTTGGGTATATTTACATTCGAATTCGAGCCACGAATACAATGAAAG
775 CACGTCCACCCGAGCATTATTTGGGTATATTTACATTCGAATTCGAGCAACGAATACAATGAAAG
8445 GTAGCCTTTATGTAAATAGATTGCACAAAATACTAACGG
840 GTAGCCTTTATGTAAATAGATTGCACAAAATACTAACGG
8484 GTAAATTCAT
Statistics
Matches: 772, Mismatches: 87, Indels: 39
0.86 0.10 0.04
Matches are distributed among these distances:
929 56 0.07
930 126 0.16
931 43 0.06
932 202 0.26
933 87 0.11
934 3 0.00
935 190 0.25
936 1 0.00
941 55 0.07
942 9 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (938 bp):
TTTATTATTAAGTTTCCATGTTGCGAAATAATAATCCTCATTTCAAAGCATTAACATTATTAGCA
TACTTTGCTATTTATTTTTTTATTCGCGAAATACGTCTACCGAGCTCTATTTGGGTATATTTACA
ATCAAATTCGAGGCACGAATGCGATGAAAGGTAGCCTTTTGGTTAATAGATTGCACAAAACCTAG
CGGGTGCGGTGATATCCACACTAATGCACCGGATCCCATCAGAACTCTGCAGACAAGTGTGCTTG
GGCGAGAGTAGTACTAGGACGGGTGAACTCCTAGGAAGTCCTCGTGCTGCACCCCTCTTTTTTTA
TTATTCTATTTATCGTAAGTTTGCAATTTGCGAAATAACAATGCTTATTGGGAAACATTAAAATT
ATTAGCGTACTTTGCATTTTTATATTATTTTCTTATTCGCAAATACGTCTACCCGAGCATCATTT
GGGTATATTTACATTCAAATTCGAGGCACGAATATGATGAAAGGTAGCATTTATGTAAATAAATT
GCGCAAAATCCTAACGGGTGCGTTCATACCAACACTAATGCACCGAATCCCATCAGAACTCCACA
ATCAAGCGTGCTTGGACGAGAGTAGTACTAAGATGAGTGACCTCCTGGGAAATCCTCATGTTACA
CCCCTCCTTTTTATATTATTTTAATTATCAGAAGTTTGCATTTTACGAAATAATAATGCTTATTG
GGAAACATTAAAATTATTAGCGTACTTTGCAATTTTATTTTATTTTTTTATTTCTAAAACACGTC
CACCCGAGCATTATTTGGGTATATTTACATTCGAATTCGAGCAACGAATACAATGAAAGGTAGCC
TTTATGTAAATAGATTGCACAAAATACTAACGGTTGCGTTCATACCTCCTTGGAAGACCTCGTGT
TGCACCCCACTTTTTTATTATTATTTTA
Found at i:8127 original size:593 final size:594
Alignment explanation
Indices: 6958--8154 Score: 1647
Period size: 593 Copynumber: 2.0 Consensus size: 594
6948 AGGATGGGTG
** * * * *
6958 ACCTCCTAGGAAGTTCTTGTGTTGCACCTCTCTTTTTTTATTATTTTATTTATCGTAAGTTTGCA
1 ACCTCCTAGGAAGACCTCGTGTTGCACCCCACTTTTTTTATTATTTTATTTATCGTAAGTTTCCA
* * * **
7023 TTTTGCGAAATAACAATGCTTATTTGGAAACATTAACATTATTAGTGTACTTTTGCATTTTTATA
66 TGTTGCGAAATAACAATCCTCATTTGGAAACATTAACATTATTAGCATACTTTTGC-------TA
* * * * *
7088 TTCTTTTTTTATTTGCAAAGTACGTCTACTCGAGCTTTATTTGGGTATATTTATATTCAAAATTC
124 TTCTTTTTTTATTCGCAAAGTACGTCTACCCGAGCTCTATTTGGGTATATTTACATACAAAATTC
* * *
7153 GAGGCACGAATGTGATGAAAGGTAGCTTTTATGTTAATAAATTGCGCAAAACCTAGTGGGTGCAG
189 GAGGCACGAATGTGATGAAAGGTAGCCTTTATGTTAATAAATTGCACAAAACCTAGCGGGTGCAG
*
7218 TCATACCAACACTAATGCACCCGATCCCATCAGAACTCCGCAATTAACTGTGCTTGGACGAGAGT
254 TCATACCAACACTAATGCACCCGATCCCATCAGAACTCCGCAATCAACTGTGCTTGGACGAGAGT
* * * * *
7283 AGTACTAAGATGAGTGACCTCCTGGGATGTCCTCGTGTTGCACCCTCCTTTTTAATTTTTAATTG
319 AGTACTAAGACGAGTGAACTCCTGGGAAGTCCTCGTGCTGCACCCTCCTTTTTAATTTTTAATTA
* * *
7348 TCGTAAGTTTGCATTTTTCGAAATAATAATGCTTATTGGGAAACATTAACATTATTAGCGTACTT
384 TCGTAAGTTTGCAATTTGCGAAATAATAATGCTTATTGGGAAACATTAAAATTATTAGCGTACTT
* * * * *
7413 TGCAATTTTATTTTATTTTTTTGTTCTCTAAATATGTCCACCCGAGCATTATTTGGGTATATTTA
449 TGCAATTTTATTTTATTTTCTTATTCGCTAAATACGTCCACCCGAGCATCATTTGGGTATATTTA
* *
7478 CATTTGAATTCGAGCAACGAATACGATGAAAGGTAGCTTTTATGTAAATAGATTGCGCAAAATCC
514 CATTCGAATTCGAGCAACGAATACGATGAAAGGTAGCATTTATGTAAATAGATTGCGCAAAATCC
*
7543 TAACGGTTGCGTTCAT
579 TAACGGGTGCGTTCAT
* **
7559 ACCTCCTTGGAAGACCTCGTGTTGCACCCCACTTTTTTATTATTATTTTATTTATTTTAAGTTTC
1 ACCTCCTAGGAAGACCTCGTGTTGCACCCCAC-TTTTT-TTATTATTTTATTTATCGTAAGTTTC
*
7624 CATGTTGCGAAATAATAATCCTCATTTGGAAACATTAACATTATTAGCATAC-TTTGC-ATT-TT
64 CATGTTGCGAAATAACAATCCTCATTTGGAAACATTAACATTATTAGCATACTTTTGCTATTCTT
7686 TTTTTATTCGCGAAA-TACGTCTACCCGAGCTCTATTTGGGTATATTTACATAC-AAATTCGAGG
129 TTTTTATTCGC-AAAGTACGTCTACCCGAGCTCTATTTGGGTATATTTACATACAAAATTCGAGG
* * * *
7749 CACTAATGTGATGAAAGGTAGCCTTTGTGTTAATAGATTGCACAAAACCTAGCGGGTGC-GTGAT
193 CACGAATGTGATGAAAGGTAGCCTTTATGTTAATAAATTGCACAAAACCTAGCGGGTGCAGTCAT
* ** * * *
7813 ACCAGCACTAATGCACTGGATCCCATCAGAACTCTGCAGA-CAAGTGTGCTTGGGCGAGAGTAGT
258 ACCAACACTAATGCACCCGATCCCATCAGAACTCCGCA-ATCAACTGTGCTTGGACGAGAGTAGT
* * * * *
7877 ACTAGGACGGGTGAACTCCTGGGAAGTCCTCGTGCTGCACCCCTCTTTTTTTATTATTCTATTTA
322 ACTAAGACGAGTGAACTCCTGGGAAGTCCTCGTGCTGCA-CCCTCCTTTTTAATT-TT-TAATTA
* *
7942 TTGTAAGTTTGCAATTTGCGAAATAATAATGCTTATTGGGAAACATTAAAATTGTTAGCGTACTT
384 TCGTAAGTTTGCAATTTGCGAAATAATAATGCTTATTGGGAAACATTAAAATTATTAGCGTACTT
* *
8007 TGCATTTTTATTTTATTTTCTTATTCGC-AAATACGTCTACCCGAGCATCATTTGGGTATATTTA
449 TGCAATTTTATTTTATTTTCTTATTCGCTAAATACGTCCACCCGAGCATCATTTGGGTATATTTA
* *
8071 CATTCGAATTCGAGGC-ACGAATATGATGAAAGGTAGCATTTATGTAAATAGATTGCGCAAAATT
514 CATTCGAATTCGA-GCAACGAATACGATGAAAGGTAGCATTTATGTAAATAGATTGCGCAAAATC
8135 CTAACGGGTGCGTTCAT
578 CTAACGGGTGCGTTCAT
8152 ACC
1 ACC
8155 AGTACTATTG
Statistics
Matches: 527, Mismatches: 61, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
591 92 0.17
592 77 0.15
593 157 0.30
594 96 0.18
601 26 0.05
602 10 0.02
603 69 0.13
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (594 bp):
ACCTCCTAGGAAGACCTCGTGTTGCACCCCACTTTTTTTATTATTTTATTTATCGTAAGTTTCCA
TGTTGCGAAATAACAATCCTCATTTGGAAACATTAACATTATTAGCATACTTTTGCTATTCTTTT
TTTATTCGCAAAGTACGTCTACCCGAGCTCTATTTGGGTATATTTACATACAAAATTCGAGGCAC
GAATGTGATGAAAGGTAGCCTTTATGTTAATAAATTGCACAAAACCTAGCGGGTGCAGTCATACC
AACACTAATGCACCCGATCCCATCAGAACTCCGCAATCAACTGTGCTTGGACGAGAGTAGTACTA
AGACGAGTGAACTCCTGGGAAGTCCTCGTGCTGCACCCTCCTTTTTAATTTTTAATTATCGTAAG
TTTGCAATTTGCGAAATAATAATGCTTATTGGGAAACATTAAAATTATTAGCGTACTTTGCAATT
TTATTTTATTTTCTTATTCGCTAAATACGTCCACCCGAGCATCATTTGGGTATATTTACATTCGA
ATTCGAGCAACGAATACGATGAAAGGTAGCATTTATGTAAATAGATTGCGCAAAATCCTAACGGG
TGCGTTCAT
Found at i:8460 original size:342 final size:341
Alignment explanation
Indices: 7567--9799 Score: 2668
Period size: 342 Copynumber: 6.6 Consensus size: 341
7557 ATACCTCCTT
* * * * *
7567 GGAAGACCTCGTGTTGCACCCCACTTTTTTATTATTATTTTATTTATTTTAAGTTTCCATGTTGC
1 GGAAGTCCTCGTGTTGCACCCCTCTTTTTT-TTATTATTTTATTTATTGTAAGTTTGCATTTTGC
* * * * *
7632 GAAATAATAATCCTCATTTGGAAACATTAACATTATTAGCATACTTTGC------A--TT-TTTT
65 GAAATAATAATGCTTATTGGGAAACATTAAAATTATTAGCGTACTTTGCAATTTTATTTTATTTT
* * *
7688 TTTATTCGCGAAATACGTCTACCCGAGC-TCTATTTGGGTATATTTACATACAAATTCGAGGCAC
130 TTTATTCGCAAAATACGTCTACCCGAGCAT-TATTTGGGTATATTTACATTCGAATTCGAGGCAC
* ** * * * * *
7752 TAATGTGATGAAAGGTAGCCTTTGTGTTAATAGATTGCACAAAA-CCTAGCGGGTGCG-TGATAC
194 GAATACGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAATCCTAACGGGTGCGTTCATAC
* * * ** * *
7815 CAGCACTAATGCACTGGATCCCATCAGAACTCTGCAGA-CAAGTGTGCTTGGGCGAGAGTAGTAC
259 CAGCACTAATGCACCGGATCCCATTAGAATTCCACA-ATCAAGCGTGCTTGGGCGAGAGTAGTAT
* * *
7879 TAGGACGGGTGAACTCCTG
323 TAGGATGGGTGACCTTCTG
* * *
7898 GGAAGTCCTCGTGCTGCACCCCTC-TTTTTTTATTATTCTATTTATTGTAAGTTTGCAATTTGCG
1 GGAAGTCCTCGTGTTGCACCCCTCTTTTTTTTATTATTTTATTTATTGTAAGTTTGCATTTTGCG
* * *
7962 AAATAATAATGCTTATTGGGAAACATTAAAATTGTTAGCGTACTTTGCATTTTTATTTTATTTTC
66 AAATAATAATGCTTATTGGGAAACATTAAAATTATTAGCGTACTTTGCAATTTTATTTTATTTTT
*
8027 TTATTCGC-AAATACGTCTACCCGAGCATCATTTGGGTATATTTACATTCGAATTCGAGGCACGA
131 TTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTCGAATTCGAGGCACGA
* * *
8091 ATATGATGAAAGGTAGCATTTATGTAAATAGATTGCGCAAAATTCTAACGGGTGCGTTCATACCA
196 ATACGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAATCCTAACGGGTGCGTTCATACCA
* * * * *
8156 GTACTATTGCACCGAATCCCATTAGAATTCCACAATCAAGCGTGCTTGGGCTATAGTAGTATTAG
261 GCACTAATGCACCGGATCCCATTAGAATTCCACAATCAAGCGTGCTTGGGCGAGAGTAGTATTAG
8221 GATGGGTGACCTTCTG
326 GATGGGTGACCTTCTG
* * * * * *
8237 GGAAATCCTCATGTTACACCCCTCTTTTTTATTATTATTTTAATTATCAG-AAGTTTGCATTTTA
1 GGAAGTCCTCGTGTTGCACCCCTCTTTTTT-TTATTATTTTATTTAT-TGTAAGTTTGCATTTTG
* *
8301 CGAAATAATAATTCTTATTGGGAAACATTAAAATTATTAGCGTACTTTGCAATTTTGTTTTATTT
64 CGAAATAATAATGCTTATTGGGAAACATTAAAATTATTAGCGTACTTTGCAATTTTATTTTATTT
* * * *
8366 TTTTATTTGTAAAACACGTCTACCCGAGCATTATTTGGGTATATTTACATTCGAATTCGAGCCAC
129 TTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTCGAATTCGAGGCAC
* * * ***
8431 GAATACAATGAAAGGTAGCCTTTATGTAAATAGATTGCACAAAATACTAACGGGTAAATTCATAC
194 GAATACGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAATCCTAACGGGTGCGTTCATAC
* * * * *
8496 CAGCACTAATGCACTGGATTCCATTAGAATTACACAGTCAAGCGTGCTTGAGCGAGAGTAGTATT
259 CAGCACTAATGCACCGGATCCCATTAGAATTCCACAATCAAGCGTGCTTGGGCGAGAGTAGTATT
*
8561 AGGATTGGTGACCTTCTG
324 AGGATGGGTGACCTTCTG
* * *
8579 GGAAGTCCTCGTGTTGCACCCATCTTTTTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGT
1 GGAAGTCCTCGTGTTGCACCCCTC-TTTTTTTTATTATTTTATTTATTGTAAGTTTGCATTTTGC
* * * * *
8644 GAAATAATAATTCTTCTTGGGAAACATAAAAATTATTAGCGTACTTTGGATTTTTATTTTATTTT
65 GAAATAATAATGCTTATTGGGAAACATTAAAATTATTAGCGTACTTTGCAATTTTATTTTATTTT
* * * * * *
8709 TTTATTCGCGAAACACGTCTTCCCAAGCTTTATTTGGGTATATTTACATTCAAATTCGAGGCACG
130 TTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTCGAATTCGAGGCACG
* * * * * * * *
8774 AATGCAATGAAAGGTAGCTTTTATGTTAATAGATTGCGTAAAA-CCTAAAGGGTGAGATCATACC
195 AATACGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAATCCTAACGGGTGCGTTCATACC
* * * * * * * * *
8838 AGCACTAATGCATCGAATCCTATCAGAACTCCGCAGTTAAGCGTG-TCTGGGCGAGAGTAGTACT
260 AGCACTAATGCACCGGATCCCATTAGAATTCCACAATCAAGCGTGCT-TGGGCGAGAGTAGTATT
* * *
8902 AGGATGGGTCACCTCCTA
324 AGGATGGGTGACCTTCTG
* * * *
8920 GGAAGTCGTCGTGTTGTACTCCTC--TTTTTTATTATTTTATTTATCGTAAGTTTGCATTTTGCG
1 GGAAGTCCTCGTGTTGCACCCCTCTTTTTTTTATTATTTTATTTATTGTAAGTTTGCATTTTGCG
* * * * * *
8983 AAATGATAATGCTTATTCGAAAACATTAACATTATTAGCGTAC-TTGCATTTTTATTTTATTTTC
66 AAATAATAATGCTTATTGGGAAACATTAAAATTATTAGCGTACTTTGCAATTTTATTTTATTTTT
* * * * * * *
9047 CTATTCGCAAAATATGTCTACCCGAGCATTATTTGCGTATATTTACATTTGAATTCAAGGCTCGT
131 TTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTCGAATTCGAGGCACGA
*
9112 ATACGATGAAAGGTAGCCTTTATGTTAATAGATTGCGCAAAATCCTAACGGGTGCGTTCATACCA
196 ATACGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAATCCTAACGGGTGCGTTCATACCA
* * * ** * *
9177 GTACTAATGTACCGGATCCCATTAGAATTTCGTAATCGAGTGTGCTTGGGCGAGAGTAGTATTAA
261 GCACTAATGCACCGGATCCCATTAGAATTCCACAATCAAGCGTGCTTGGGCGAGAGTAGTATT-A
*
9242 GG-TGGGAGACCTTCTG
325 GGATGGGTGACCTTCTG
* * *
9258 GGAAGTCCTCGTGTTGCACCCCTCTTTTTTTTTTTATTTTAATTATTGTAAGTTTGCATTTTACG
1 GGAAGTCCTCGTGTTGCACCCCTCTTTTTTTTATTATTTTATTTATTGTAAGTTTGCATTTTGCG
*
9323 AAATAATAATGCTTATTGGGAAACATTAAAATTATTAGCGTACTTTGC-A----A---T-TTCTT
66 AAATAATAATGCTTATTGGGAAACATTAAAATTATTAGCGTACTTTGCAATTTTATTTTATTTTT
* * * *
9379 TTATTCGTAAAA-AAGTCTACCCGAGCATTATTTGGGTATATTTACATTCG-GTTCGAGCCACGA
131 TTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTCGAATTCGAGGCACGA
* *
9442 ATACGATGAAAGGTAGCTTTTATGTAAATAGATTGCGCAAAATCCTAATGGGTGCGTTCATACCA
196 ATACGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAATCCTAACGGGTGCGTTCATACCA
* * *
9507 GCACTAATGCACCGGATTCCATTAGAATTCCATAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAG
261 GCACTAATGCACCGGATCCCATTAGAATTCCACAATCAAGCGTGCTTGGGCGAGAGTAGTATTAG
9572 GATGGGTGA-CTTCCTG
326 GATGGGTGACCTT-CTG
* * *
9588 GAAAGTACTCGTGTTGCACCCCTC-TTTTTTTATTATTTTATTTATTGTAAGTTAT-CATTTTGT
1 GGAAGTCCTCGTGTTGCACCCCTCTTTTTTTTATTATTTTATTTATTGTAAGTT-TGCATTTTGC
* * * * * *
9651 GAAATAATAATGCTTATTTGGAAA-ATTTAACATTATTAGTGTTCTATGCAATTTTATTTTCTTT
65 GAAATAATAATGCTTATTGGGAAACA-TTAAAATTATTAGCGTACTTTGCAATTTTATTTTATTT
* * * * *
9715 TTTTATTCGCGAAGTTCGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAAATTCGAGGCA
129 TTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTC-GAATTCGAGGCA
**
9780 CGAATGTGATGAAAGGTAGC
193 CGAATACGATGAAAGGTAGC
9800 GTTGAAGCCC
Statistics
Matches: 1622, Mismatches: 238, Indels: 74
0.84 0.12 0.04
Matches are distributed among these distances:
328 1 0.00
329 153 0.09
330 163 0.10
331 56 0.03
332 13 0.01
333 1 0.00
334 1 0.00
335 1 0.00
336 1 0.00
337 199 0.12
338 209 0.13
339 129 0.08
340 80 0.05
341 225 0.14
342 384 0.24
343 6 0.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (341 bp):
GGAAGTCCTCGTGTTGCACCCCTCTTTTTTTTATTATTTTATTTATTGTAAGTTTGCATTTTGCG
AAATAATAATGCTTATTGGGAAACATTAAAATTATTAGCGTACTTTGCAATTTTATTTTATTTTT
TTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTCGAATTCGAGGCACGA
ATACGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAATCCTAACGGGTGCGTTCATACCA
GCACTAATGCACCGGATCCCATTAGAATTCCACAATCAAGCGTGCTTGGGCGAGAGTAGTATTAG
GATGGGTGACCTTCTG
Found at i:9263 original size:679 final size:677
Alignment explanation
Indices: 7559--9799 Score: 2729
Period size: 679 Copynumber: 3.3 Consensus size: 677
7549 TTGCGTTCAT
* * ** *
7559 ACCTCCTTGGAAGACCTCGTGTTGCACCCCACTTTTTTATTATTATTTTATTTATTTTAAGTTTC
1 ACCTCC-TGGAAG-TCTCGTGTTGCACCCCTC-TTTTTATTATTATTTTATTTATCGTAAGTTTG
* * * *
7624 CATGTTGCGAAATAATAATCCTCATTTGG-AAACATTAACATTATTAGCATACTTTGC------A
63 CATTTTGCGAAATAATAATGCTTA-TTGGAAAACATTAACATTATTAGCGTACTTTGCAATTTTA
* * *
7682 --TT-TTTTTTTATTCGCGAAATACGTCTACCCGAGC-TCTATTTGGGTATATTTACATACAAAT
127 TTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCAT-TATTTGGGTATATTTACATTCGAAT
** * *
7743 TCGAGGCAC-TAATGTGATGAAAGGTAGCCTTTGTGTTAATAGATTGCACAAAA-CCTAGCGGGT
191 TCGAGGCACGT-ATACGATGAAAGGTAGCCTTTATGTTAATAGATTGCACAAAATCCTAACGGGT
* * *
7806 GCG-TGATACCAGCACTAATGCACTGGATCCCATCAGAA-CTCTGCAGA-CAAGTGTGCTTGGGC
255 GCGTTCATACCAGCACTAATGCACTGGATCCCATTAGAATTTC-GCA-ATCAAGTGTGCTTGGGC
* * * * * *
7868 GAGAGTAGTACTAGGACGGGTGAACTCCTGGGAAGTCCTCGTGCTGCACCC-CTCTTTTTTTATT
318 GAGAGTAGTATTAGGATGGGTGACCTTCTGGGAAGTCCTCGTGTTGCACCCTCTTTTTTTTTATT
* * *
7932 ATTCTATTTATTGTAAGTTTGCAATTTGCGAAATAATAATGCTTATTGGGAAACATTAAAATTGT
383 ATTTTATTTATTGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAAAATTAT
* * *
7997 TAGCGTACTTTGCATTTTTATTTTATTTTCTTATTCGCAAATACGTCTACCCGAGCATCATTTGG
448 TAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAAACGTCTACCCGAGCATTATTTGG
* *
8062 GTATATTTACATTCGAATTCGAGGCACGAATATGATGAAAGGTAGCATTTATGTAAATAGATTGC
513 GTATATTTACATTC-AATTCGAGGCACGAATACGATGAAAGGTAGCTTTTATGTAAATAGATTGC
* * * * *
8127 GCAAAATTCTAACGGGTGCGTTCATACCAGTACTATTGCACCGAATCCCATTAGAATTCCACAAT
577 GCAAAATCCTAAAGGGTGCGTTCATACCAGCACTAATGCACCGAAT-CCATTAGAATTCCACAGT
* *
8192 CAAGCGTGCTTGGGCTATAGTAGTATTAGGATGGGTG
641 CAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTG
* * * * *
8229 ACCTTCTGGGAAATCCTCATGTTACACCCCTCTTTTTTATTATTATTTTAATTATCAG-AAGTTT
1 ACCTCCT-GGAAGT-CTCGTGTTGCACCCCTC-TTTTTATTATTATTTTATTTATC-GTAAGTTT
* * * * *
8293 GCATTTTACGAAATAATAATTCTTATTGGGAAACATTAAAATTATTAGCGTACTTTGCAATTTTG
62 GCATTTTGCGAAATAATAATGCTTATTGGAAAACATTAACATTATTAGCGTACTTTGCAATTTTA
* * *
8358 TTTTATTTTTTTATTTGTAAAACACGTCTACCCGAGCATTATTTGGGTATATTTACATTCGAATT
127 TTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTCGAATT
* * * * * **
8423 CGAGCCACGAATACAATGAAAGGTAGCCTTTATGTAAATAGATTGCACAAAATACTAACGGGTAA
192 CGAGGCACGTATACGATGAAAGGTAGCCTTTATGTTAATAGATTGCACAAAATCCTAACGGGTGC
* * * * * * *
8488 ATTCATACCAGCACTAATGCACTGGATTCCATTAGAATTACACAGTCAAGCGTGCTTGAGCGAGA
257 GTTCATACCAGCACTAATGCACTGGATCCCATTAGAATTTCGCAATCAAGTGTGCTTGGGCGAGA
*
8553 GTAGTATTAGGATTGGTGACCTTCTGGGAAGTCCTCGTGTTGCACCCATCTTTTTTTTTATTATT
322 GTAGTATTAGGATGGGTGACCTTCTGGGAAGTCCTCGTGTTGCACCC-TCTTTTTTTTTATTATT
* * * * *
8618 TTATTTATCGTAAGTTTGCATTTTGTGAAATAATAATTCTTCTTGGGAAACATAAAAATTATTAG
386 TTATTTATTGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAAAATTATTAG
* * * * *
8683 CGTACTTTGGATTTTTATTTTATTTTTTTATTCGCGAAACACGTCTTCCCAAGCTTTATTTGGGT
451 CGTACTTTGCATTTTTATTTTATTTTTTTATTCGC-AAAAACGTCTACCCGAGCATTATTTGGGT
* * * *
8748 ATATTTACATTCAAATTCGAGGCACGAATGCAATGAAAGGTAGCTTTTATGTTAATAGATTGCGT
515 ATATTTACATTC-AATTCGAGGCACGAATACGATGAAAGGTAGCTTTTATGTAAATAGATTGCGC
* * * * * * *
8813 AAAA-CCTAAAGGGTGAGATCATACCAGCACTAATGCATCGAATCCTATCAGAACTCCGCAGTTA
579 AAAATCCTAAAGGGTGCGTTCATACCAGCACTAATGCACCGAATCC-ATTAGAATTCCACAGTCA
* *
8877 AGCGTG-TCTGGGCGAGAGTAGTACTAGGATGGGTC
643 AGCGTGCT-TGGGCGAGAGTAGTATTAGGATGGGTG
* *
8912 ACCTCCTAGGAAGTCGTCGTGTTGTACTCCTC-TTTT-TTATTATTTTATTTATCGTAAGTTTGC
1 ACCTCCT-GGAAGTC-TCGTGTTGCACCCCTCTTTTTATTATTATTTTATTTATCGTAAGTTTGC
* * *
8975 ATTTTGCGAAATGATAATGCTTATTCGAAAACATTAACATTATTAGCGTAC-TTGCATTTTTATT
64 ATTTTGCGAAATAATAATGCTTATTGGAAAACATTAACATTATTAGCGTACTTTGCAATTTTATT
** * * * *
9039 TTATTTTCCTATTCGCAAAATATGTCTACCCGAGCATTATTTGCGTATATTTACATTTGAATTCA
129 TTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTCGAATTCG
* *
9104 AGGCTCGTATACGATGAAAGGTAGCCTTTATGTTAATAGATTGCGCAAAATCCTAACGGGTGCGT
194 AGGCACGTATACGATGAAAGGTAGCCTTTATGTTAATAGATTGCACAAAATCCTAACGGGTGCGT
* * * * *
9169 TCATACCAGTACTAATGTACCGGATCCCATTAGAATTTCGTAATCGAGTGTGCTTGGGCGAGAGT
259 TCATACCAGCACTAATGCACTGGATCCCATTAGAATTTCGCAATCAAGTGTGCTTGGGCGAGAGT
*
9234 AGTATTAAGG-TGGGAGACCTTCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTTTTT-TTATTT
324 AGTATT-AGGATGGGTGACCTTCTGGGAAGTCCTCGTGTTGCA-CCCTCTTTTTTTTTATTATTT
* *
9297 TAATTATTGTAAGTTTGCATTTTACGAAATAATAATGCTTATTGGGAAACATTAAAATTATTAGC
387 TATTTATTGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAAAATTATTAGC
* * *
9362 GTACTTTGCA-----A---T-TTCTTTTATTCGTAAAAAAGTCTACCCGAGCATTATTTGGGTAT
452 GTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAAACGTCTACCCGAGCATTATTTGGGTAT
** *
9418 ATTTACATTCGGTTCGAGCCACGAATACGATGAAAGGTAGCTTTTATGTAAATAGATTGCGCAAA
517 ATTTACATTCAATTCGAGGCACGAATACGATGAAAGGTAGCTTTTATGTAAATAGATTGCGCAAA
* * *
9483 ATCCTAATGGGTGCGTTCATACCAGCACTAATGCACCGGATTCCATTAGAATTCCATAGTCAAGC
582 ATCCTAAAGGGTGCGTTCATACCAGCACTAATGCACC-GAATCCATTAGAATTCCACAGTCAAGC
9548 GTGCTTGGGCGAGAGTAGTATTAGGATGGGTG
646 GTGCTTGGGCGAGAGTAGTATTAGGATGGGTG
* *
9580 ACTTCCTGGAAAGTACTCGTGTTGCACCCCTCTTTTT-TTATTATTTTATTTATTGTAAGTTAT-
1 ACCTCCTGG-AAGT-CTCGTGTTGCACCCCTCTTTTTATTATTATTTTATTTATCGTAAGTT-TG
* * * * *
9643 CATTTTGTGAAATAATAATGCTTATTTGGAAAA-TTTAACATTATTAGTGTTCTATGCAATTTTA
63 CATTTTGCGAAATAATAATGCTTA-TTGGAAAACATTAACATTATTAGCGTACTTTGCAATTTTA
* * * * * *
9707 TTTTCTTTTTTTATTCGCGAAGTTCGTCTACCCGAGCTTTATTTGGGTATATTTACATTCAAAAT
127 TTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTC-GAAT
* **
9772 TCGAGGCACGAATGTGATGAAAGGTAGC
191 TCGAGGCACGTATACGATGAAAGGTAGC
9800 GTTGAAGCCC
Statistics
Matches: 1334, Mismatches: 199, Indels: 75
0.83 0.12 0.05
Matches are distributed among these distances:
667 51 0.04
668 135 0.10
669 88 0.07
670 165 0.12
671 26 0.02
673 1 0.00
678 75 0.06
679 320 0.24
680 84 0.06
681 96 0.07
682 5 0.00
683 202 0.15
684 86 0.06
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (677 bp):
ACCTCCTGGAAGTCTCGTGTTGCACCCCTCTTTTTATTATTATTTTATTTATCGTAAGTTTGCAT
TTTGCGAAATAATAATGCTTATTGGAAAACATTAACATTATTAGCGTACTTTGCAATTTTATTTT
ATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATTTGGGTATATTTACATTCGAATTCGAG
GCACGTATACGATGAAAGGTAGCCTTTATGTTAATAGATTGCACAAAATCCTAACGGGTGCGTTC
ATACCAGCACTAATGCACTGGATCCCATTAGAATTTCGCAATCAAGTGTGCTTGGGCGAGAGTAG
TATTAGGATGGGTGACCTTCTGGGAAGTCCTCGTGTTGCACCCTCTTTTTTTTTATTATTTTATT
TATTGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAAAATTATTAGCGTAC
TTTGCATTTTTATTTTATTTTTTTATTCGCAAAAACGTCTACCCGAGCATTATTTGGGTATATTT
ACATTCAATTCGAGGCACGAATACGATGAAAGGTAGCTTTTATGTAAATAGATTGCGCAAAATCC
TAAAGGGTGCGTTCATACCAGCACTAATGCACCGAATCCATTAGAATTCCACAGTCAAGCGTGCT
TGGGCGAGAGTAGTATTAGGATGGGTG
Found at i:10567 original size:3 final size:3
Alignment explanation
Indices: 10559--10642 Score: 71
Period size: 3 Copynumber: 28.0 Consensus size: 3
10549 TCAAACGTTT
* * ** * ** *
10559 TAA TAA TAA TAA CAT TAA TAA TCT TAA TAA TTAT TTT TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
*
10605 TAA TAA TAA TAA TAA -AT TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10643 ATATTAAATA
Statistics
Matches: 63, Mismatches: 16, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
2 1 0.02
3 60 0.95
4 2 0.03
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:10627 original size:20 final size:20
Alignment explanation
Indices: 10602--10639 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
10592 TTTTTAATGA
10602 TAATAATAATAATAATAAAT
1 TAATAATAATAATAATAAAT
10622 TAATAATAATAATAATAA
1 TAATAATAATAATAATAA
10640 TAAATATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
TAATAATAATAATAATAAAT
Found at i:10653 original size:23 final size:23
Alignment explanation
Indices: 10601--10644 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
10591 ATTTTTAATG
10601 ATAATAATAATAATAATAAATTA
1 ATAATAATAATAATAATAAATTA
10624 ATAATAATAATAATAATAAAT
1 ATAATAATAATAATAATAAAT
10645 ATTAAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (23 bp):
ATAATAATAATAATAATAAATTA
Found at i:11686 original size:29 final size:28
Alignment explanation
Indices: 11647--12024 Score: 314
Period size: 29 Copynumber: 13.0 Consensus size: 28
11637 GAAGGTCCCT
*
11647 AAACTATCCAAAAATTACATTTTTACTCCC
1 AAACT-TCCAAAAATTCCATTTTTAC-CCC
* *
11677 GAACTTCCAAAAATTCCATTTTCGACCCC
1 AAACTTCCAAAAATTCCATTTT-TACCCC
* ** *
11706 AAAATTTTAAAAATTCCATTTTTACCTC
1 AAACTTCCAAAAATTCCATTTTTACCCC
* * * *
11734 GAACTTCCAAGAATTCAATTTTCGACCCC
1 AAACTTCCAAAAATTCCATTTT-TACCCC
*
11763 AAAACTT-CAAAAAATCCATTTTTACCCCC
1 -AAACTTCCAAAAATTCCATTTTTA-CCCC
*
11792 AAACTTCCAAAAATTCCATTTTGACCCC
1 AAACTTCCAAAAATTCCATTTTTACCCC
* *
11820 TAAACTTCCAAAAA-TCACATTTTTAATCTC
1 -AAACTTCCAAAAATTC-CATTTTT-ACCCC
11850 AAACTTCCAAAAATTCCATTTTTGACCCC
1 AAACTTCCAAAAATTCCATTTTT-ACCCC
11879 GAAACTTCC-AAAATTCCATTTTTACCCCC
1 -AAACTTCCAAAAATTCCATTTTTA-CCCC
* * * * *
11908 GATCTTCTAAAAATTCCATTTTCGACCCTG
1 AAACTTCCAAAAATTCCATTTT-TACCC-C
** *
11938 AAACTTCCAAAAATTATATTTTAACCCTC
1 AAACTTCCAAAAATTCCATTTTTACCC-C
* * * *
11967 AAACCTCCAAAATTTCCAATTTTAACCTCG
1 AAACTTCCAAAAATTCC-ATTTTTACC-CC
*
11997 AAACTTTCAAAAATTACCATTTTT-CCCC
1 AAACTTCCAAAAATT-CCATTTTTACCCC
12025 TGAATGTCCA
Statistics
Matches: 279, Mismatches: 52, Indels: 36
0.76 0.14 0.10
Matches are distributed among these distances:
28 40 0.14
29 168 0.60
30 68 0.24
31 3 0.01
ACGTcount: A:0.36, C:0.29, G:0.03, T:0.33
Consensus pattern (28 bp):
AAACTTCCAAAAATTCCATTTTTACCCC
Found at i:11776 original size:58 final size:58
Alignment explanation
Indices: 11647--12101 Score: 392
Period size: 58 Copynumber: 7.8 Consensus size: 58
11637 GAAGGTCCCT
*
11647 AAACTATCCAAAAATTACATTTTTACTCCCGAACTTCCAAAAATTCCATTTTCGACCCCA
1 AAACT-TCCAAAAATTCCATTTTTAC-CCCGAACTTCCAAAAATTCCATTTTCGACCCCA
** * * *
11707 AAA-TTTTAAAAATTCCATTTTTACCTCGAACTTCCAAGAATTCAATTTTCGACCCCA
1 AAACTTCCAAAAATTCCATTTTTACCCCGAACTTCCAAAAATTCCATTTTCGACCCCA
* * *
11764 AAACTT-CAAAAAATCCATTTTTACCCCCAAACTTCCAAAAATTCCATTTT-GACCCCT
1 AAACTTCCAAAAATTCCATTTTTA-CCCCGAACTTCCAAAAATTCCATTTTCGACCCCA
* * * * *
11821 AAACTTCCAAAAA-TCACATTTTTAATCTCAAACTTCCAAAAATTCCATTTTTGACCCCG
1 AAACTTCCAAAAATTC-CATTTTT-ACCCCGAACTTCCAAAAATTCCATTTTCGACCCCA
* * **
11880 AAACTTCC-AAAATTCCATTTTTACCCCCGATCTTCTAAAAATTCCATTTTCGACCCTG
1 AAACTTCCAAAAATTCCATTTTTA-CCCCGAACTTCCAAAAATTCCATTTTCGACCCCA
** * * * * * * *
11938 AAACTTCCAAAAATTATATTTTAACCCTCAAACCTCCAAAATTTCCAATTTT-AACCTCG
1 AAACTTCCAAAAATTCCATTTTTACCC-CGAACTTCCAAAAATTCC-ATTTTCGACCCCA
* * * * *
11997 AAACTTTCAAAAATTACCATTTTT-CCCCTGAA-TGTCCAAAAACTCTATTTTGGACCTCA
1 AAACTTCCAAAAATT-CCATTTTTACCCC-GAACT-TCCAAAAATTCCATTTTCGACCCCA
** *
12056 AAACTAT--AAAAATTTTATTTTTACCCTCGAA-TGTCTAAAAATTCCA
1 AAACT-TCCAAAAATTCCATTTTTACCC-CGAACT-TCCAAAAATTCCA
12102 CCTTTTAACG
Statistics
Matches: 327, Mismatches: 50, Indels: 38
0.79 0.12 0.09
Matches are distributed among these distances:
57 69 0.21
58 158 0.48
59 86 0.26
60 14 0.04
ACGTcount: A:0.36, C:0.27, G:0.04, T:0.33
Consensus pattern (58 bp):
AAACTTCCAAAAATTCCATTTTTACCCCGAACTTCCAAAAATTCCATTTTCGACCCCA
Found at i:12589 original size:12 final size:14
Alignment explanation
Indices: 12572--12603 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
12562 TCCTTTTCCC
12572 AAAGTTTTA-AAA-
1 AAAGTTTTACAAAG
12584 AAAGTTTTACAAAG
1 AAAGTTTTACAAAG
12598 AAAGTT
1 AAAGTT
12604 CGTCATTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.50
13 3 0.17
14 6 0.33
ACGTcount: A:0.53, C:0.03, G:0.12, T:0.31
Consensus pattern (14 bp):
AAAGTTTTACAAAG
Found at i:14751 original size:29 final size:28
Alignment explanation
Indices: 14712--15089 Score: 314
Period size: 29 Copynumber: 13.0 Consensus size: 28
14702 GAAGGTCCCT
*
14712 AAACTATCCAAAAATTACATTTTTACTCCC
1 AAACT-TCCAAAAATTCCATTTTTAC-CCC
* *
14742 GAACTTCCAAAAATTCCATTTTCGACCCC
1 AAACTTCCAAAAATTCCATTTT-TACCCC
* ** *
14771 AAAATTTTAAAAATTCCATTTTTACCTC
1 AAACTTCCAAAAATTCCATTTTTACCCC
* * * *
14799 GAACTTCCAAGAATTCAATTTTCGACCCC
1 AAACTTCCAAAAATTCCATTTT-TACCCC
*
14828 AAAACTT-CAAAAAATCCATTTTTACCCCC
1 -AAACTTCCAAAAATTCCATTTTTA-CCCC
*
14857 AAACTTCCAAAAATTCCATTTTGACCCC
1 AAACTTCCAAAAATTCCATTTTTACCCC
* *
14885 TAAACTTCCAAAAA-TCACATTTTTAATCTC
1 -AAACTTCCAAAAATTC-CATTTTT-ACCCC
14915 AAACTTCCAAAAATTCCATTTTTGACCCC
1 AAACTTCCAAAAATTCCATTTTT-ACCCC
14944 GAAACTTCC-AAAATTCCATTTTTACCCCC
1 -AAACTTCCAAAAATTCCATTTTTA-CCCC
* * * * *
14973 GATCTTCTAAAAATTCCATTTTCGACCCTG
1 AAACTTCCAAAAATTCCATTTT-TACCC-C
** *
15003 AAACTTCCAAAAATTATATTTTAACCCTC
1 AAACTTCCAAAAATTCCATTTTTACCC-C
* * * *
15032 AAACCTCCAAAATTTCCAATTTTAACCTCG
1 AAACTTCCAAAAATTCC-ATTTTTACC-CC
*
15062 AAACTTTCAAAAATTACCATTTTT-CCCC
1 AAACTTCCAAAAATT-CCATTTTTACCCC
15090 TGAATGTCCA
Statistics
Matches: 279, Mismatches: 52, Indels: 36
0.76 0.14 0.10
Matches are distributed among these distances:
28 40 0.14
29 168 0.60
30 68 0.24
31 3 0.01
ACGTcount: A:0.36, C:0.29, G:0.03, T:0.33
Consensus pattern (28 bp):
AAACTTCCAAAAATTCCATTTTTACCCC
Found at i:14841 original size:58 final size:58
Alignment explanation
Indices: 14712--15166 Score: 392
Period size: 58 Copynumber: 7.8 Consensus size: 58
14702 GAAGGTCCCT
*
14712 AAACTATCCAAAAATTACATTTTTACTCCCGAACTTCCAAAAATTCCATTTTCGACCCCA
1 AAACT-TCCAAAAATTCCATTTTTAC-CCCGAACTTCCAAAAATTCCATTTTCGACCCCA
** * * *
14772 AAA-TTTTAAAAATTCCATTTTTACCTCGAACTTCCAAGAATTCAATTTTCGACCCCA
1 AAACTTCCAAAAATTCCATTTTTACCCCGAACTTCCAAAAATTCCATTTTCGACCCCA
* * *
14829 AAACTT-CAAAAAATCCATTTTTACCCCCAAACTTCCAAAAATTCCATTTT-GACCCCT
1 AAACTTCCAAAAATTCCATTTTTA-CCCCGAACTTCCAAAAATTCCATTTTCGACCCCA
* * * * *
14886 AAACTTCCAAAAA-TCACATTTTTAATCTCAAACTTCCAAAAATTCCATTTTTGACCCCG
1 AAACTTCCAAAAATTC-CATTTTT-ACCCCGAACTTCCAAAAATTCCATTTTCGACCCCA
* * **
14945 AAACTTCC-AAAATTCCATTTTTACCCCCGATCTTCTAAAAATTCCATTTTCGACCCTG
1 AAACTTCCAAAAATTCCATTTTTA-CCCCGAACTTCCAAAAATTCCATTTTCGACCCCA
** * * * * * * *
15003 AAACTTCCAAAAATTATATTTTAACCCTCAAACCTCCAAAATTTCCAATTTT-AACCTCG
1 AAACTTCCAAAAATTCCATTTTTACCC-CGAACTTCCAAAAATTCC-ATTTTCGACCCCA
* * * * *
15062 AAACTTTCAAAAATTACCATTTTT-CCCCTGAA-TGTCCAAAAACTCTATTTTGGACCTCA
1 AAACTTCCAAAAATT-CCATTTTTACCCC-GAACT-TCCAAAAATTCCATTTTCGACCCCA
** *
15121 AAACTAT--AAAAATTTTATTTTTACCCTCGAA-TGTCTAAAAATTCCA
1 AAACT-TCCAAAAATTCCATTTTTACCC-CGAACT-TCCAAAAATTCCA
15167 CCTTTTAACG
Statistics
Matches: 327, Mismatches: 50, Indels: 38
0.79 0.12 0.09
Matches are distributed among these distances:
57 69 0.21
58 158 0.48
59 86 0.26
60 14 0.04
ACGTcount: A:0.36, C:0.27, G:0.04, T:0.33
Consensus pattern (58 bp):
AAACTTCCAAAAATTCCATTTTTACCCCGAACTTCCAAAAATTCCATTTTCGACCCCA
Found at i:15654 original size:12 final size:14
Alignment explanation
Indices: 15637--15668 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
15627 TCCTTTTCCC
15637 AAAGTTTTA-AAA-
1 AAAGTTTTACAAAG
15649 AAAGTTTTACAAAG
1 AAAGTTTTACAAAG
15663 AAAGTT
1 AAAGTT
15669 CGTCATTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.50
13 3 0.17
14 6 0.33
ACGTcount: A:0.53, C:0.03, G:0.12, T:0.31
Consensus pattern (14 bp):
AAAGTTTTACAAAG
Done.