Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013083.1 Kokia drynarioides strain JFW-HI SEQ_128101, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4043
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32


Found at i:1303 original size:9 final size:9

Alignment explanation


    Indices: 1277--1317  Score: 55
    Period size: 9  Copynumber: 4.3  Consensus size: 9

       1267 TTATATTATG

                      
       1277 TTTTAAACTA
          1 TTTTAAA-TA

                      
       1287 TTTATAAATA
          1 TTT-TAAATA

                     
       1297 TTTTAAATA
          1 TTTTAAATA

                   * 
       1306 TTTTAAAAA
          1 TTTTAAATA

               
       1315 TTT
          1 TTT

       1318 ATGTGACATT


Statistics
Matches: 29,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
   9   17  0.59
  10    8  0.28
  11    4  0.14

ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54


Consensus pattern (9 bp):   
TTTTAAATA
Done.