Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013085.1 Kokia drynarioides strain JFW-HI SEQ_128103, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6809
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32


Found at i:6008 original size:41 final size:41

Alignment explanation


    Indices: 5963--6042  Score: 108
    Period size: 41  Copynumber: 2.0  Consensus size: 41

       5953 AGACTTGTGA

                                             *        
       5963 CTCGAAATCA-ACATGAGATTATGAATAAGGAAGACTCATAT
          1 CTCGAAATCAGA-ATGAGATTATGAATAAGGAAAACTCATAT

                 *  *               *              
       6004 CTCGAGATGAGAATGAGATTATGATTAAGGAAAACTCAT
          1 CTCGAAATCAGAATGAGATTATGAATAAGGAAAACTCAT

       6043 GACTCGATAG


Statistics
Matches: 34,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  41   33  0.97
  42    1  0.03

ACGTcount: A:0.42, C:0.12, G:0.20, T:0.25


Consensus pattern (41 bp):   
CTCGAAATCAGAATGAGATTATGAATAAGGAAAACTCATAT
Done.