Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013088.1 Kokia drynarioides strain JFW-HI SEQ_128106, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 796

Length: 1327
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36


Found at i:731 original size:16 final size:16

Alignment explanation


    Indices: 689--739  Score: 52
    Period size: 16  Copynumber: 3.1  Consensus size: 16

        679 TTTTAGTTCA

                              
        689 TTCATGTTGTGTTATATT
          1 TTCATGTTGTGTT-TA-T

                             
        707 GTTCA--TTGTGTTTAT
          1 -TTCATGTTGTGTTTAT

                       *    
        722 TTCATGTTGTGATTAT
          1 TTCATGTTGTGTTTAT

              
        738 TT
          1 TT

        740 TCTGCAAAGT


Statistics
Matches: 29,  Mismatches: 1, Indels: 7
        0.78            0.03        0.19

Matches are distributed among these distances:
  14    4  0.14
  15    1  0.03
  16   13  0.45
  17    7  0.24
  19    4  0.14

ACGTcount: A:0.16, C:0.06, G:0.18, T:0.61


Consensus pattern (16 bp):   
TTCATGTTGTGTTTAT
Done.