Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001310.1 Kokia drynarioides strain JFW-HI SEQ_112725, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5863
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35


Found at i:1579 original size:17 final size:17

Alignment explanation


    Indices: 1557--1591  Score: 61
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1547 AAAGTCTCGA

                             
       1557 CAACAACATAATTAGCG
          1 CAACAACATAATTAGCG

                     *       
       1574 CAACAACATGATTAGCG
          1 CAACAACATAATTAGCG

             
       1591 C
          1 C

       1592 GACTCGAACC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.43, C:0.26, G:0.14, T:0.17


Consensus pattern (17 bp):   
CAACAACATAATTAGCG

Found at i:5134 original size:39 final size:39

Alignment explanation


    Indices: 5085--5161  Score: 154
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       5075 GCCATATTTC

                                                   
       5085 ATTTGGTTTATCATATAAAAACATATAACATTATATATT
          1 ATTTGGTTTATCATATAAAAACATATAACATTATATATT

                                                  
       5124 ATTTGGTTTATCATATAAAAACATATAACATTATATAT
          1 ATTTGGTTTATCATATAAAAACATATAACATTATATAT

       5162 CATCATATCA


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.44, C:0.08, G:0.05, T:0.43


Consensus pattern (39 bp):   
ATTTGGTTTATCATATAAAAACATATAACATTATATATT
Done.