genome.fa.s13101.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013101.1 Kokia drynarioides strain JFW-HI SEQ_128119, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  321516

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2526--2584	24	2.4	24	97	2	109	72	0	10	16	1.10
2538--2579	19	2.2	20	86	4	59	71	0	7	21	1.09
3746--3775	5	6.0	5	92	0	51	3	60	0	36	1.14
16207--17036	411	2.0	411	95	0	1482	26	24	14	34	1.94
22617--22648	6	5.3	6	100	0	64	15	0	53	31	1.43
23139--23209	30	2.4	31	83	9	85	46	16	14	22	1.83
24127--24198	30	2.4	31	81	6	85	20	12	18	48	1.80
24288--24352	30	2.2	30	88	2	96	26	15	23	35	1.94
27517--27752	118	2.0	118	99	0	463	31	13	16	38	1.88
29747--29815	30	2.3	30	87	9	97	53	7	5	33	1.52
30807--30866	33	2.0	32	81	15	74	50	5	3	41	1.41
35656--35696	22	1.9	21	85	5	55	48	0	7	43	1.30
48737--48791	29	2.0	27	82	13	67	45	1	9	43	1.46
65979--66058	24	3.3	24	87	3	99	1	31	18	48	1.56
65967--66080	48	2.4	48	82	2	131	2	35	15	46	1.60
66016--66080	24	2.7	24	87	0	94	3	32	13	50	1.57
70383--70457	30	2.5	31	85	6	93	53	2	2	41	1.29
78671--78709	18	2.1	19	90	4	62	10	12	0	76	1.01
79076--79128	21	2.5	20	80	16	63	60	1	1	35	1.19
84052--84087	17	2.1	17	100	0	72	22	5	16	55	1.62
90489--90526	10	3.8	10	86	6	51	57	0	0	42	0.98
92164--92191	4	7.0	4	100	0	56	25	25	50	0	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114188--114247	28	2.1	28	81	12	68	48	3	1	46	1.28
132324--132436	56	2.0	56	91	0	181	29	27	19	23	1.98
139308--139455	58	2.6	58	84	7	169	39	8	9	42	1.67
139581--139606	11	2.4	11	100	0	52	73	0	0	26	0.84
145148--145191	18	2.5	17	77	3	52	13	6	4	75	1.17
161734--161852	64	1.9	63	85	1	166	30	8	27	33	1.86
165761--165880	58	2.1	58	91	0	195	34	0	18	47	1.49
169875--169912	6	6.3	6	90	0	58	52	15	13	18	1.74
174112--174146	19	1.9	17	88	11	52	37	0	2	60	1.12
192680--192752	31	2.4	31	78	0	74	31	15	8	45	1.75
195226--195256	14	2.2	14	94	0	53	54	6	0	38	1.26
195383--195417	14	2.5	14	90	0	52	34	11	2	51	1.53
199817--199857	22	1.9	21	85	5	55	26	0	0	73	0.84
204608--204650	20	2.2	20	100	0	86	34	16	27	20	1.94
205939--206002	30	2.2	30	82	2	76	40	4	10	43	1.61
206598--206665	30	2.3	30	82	10	77	54	14	4	26	1.59
206614--206674	30	2.1	30	81	3	70	60	9	4	24	1.48
209875--209904	15	1.9	16	93	6	53	60	20	0	20	1.37
212311--212468	79	2.0	79	97	0	298	43	8	15	32	1.77
213820--213846	2	13.5	2	100	0	54	51	0	0	48	1.00
214294--214321	5	5.6	5	100	0	56	0	64	0	35	0.94
226182--226212	12	2.6	12	89	0	53	90	0	9	0	0.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226744--226791	17	2.7	18	83	6	53	35	2	2	60	1.20
241844--241964	62	2.0	62	91	0	197	30	11	24	33	1.91
249237--249272	12	3.0	12	91	0	54	41	8	50	0	1.33
249238--249272	18	1.9	18	88	0	52	40	8	51	0	1.33
261334--261370	19	1.9	19	88	0	56	51	5	2	40	1.39
261867--261895	9	3.2	9	100	0	58	34	0	10	55	1.34
262467--262528	29	2.3	27	76	20	67	22	6	11	59	1.54
266006--266076	32	2.2	33	92	2	117	23	14	9	52	1.71
266007--266087	32	2.6	31	86	7	94	24	14	12	48	1.79
266951--266988	18	2.1	19	85	5	51	55	0	2	42	1.14
267940--267981	17	2.4	18	88	11	61	45	0	0	54	0.99
267940--267982	14	2.9	14	86	10	50	46	0	0	53	1.00
267940--267990	17	3.0	17	83	8	52	47	0	0	52	1.00
270859--270913	21	2.6	21	76	2	65	27	3	29	40	1.73
274710--274778	22	3.1	22	89	2	102	13	20	26	40	1.88
274785--274836	25	2.1	25	92	0	86	11	26	15	46	1.80
291491--291567	26	2.8	28	80	5	86	50	0	1	48	1.09
297611--297641	16	1.9	16	93	0	53	3	12	0	83	0.75
297901--297977	35	2.1	37	85	9	104	40	2	22	35	1.68
297907--297985	39	2.1	35	84	9	95	44	3	16	35	1.66
302600--302654	18	2.8	19	84	15	69	32	3	0	63	1.12
304428--304672	67	3.6	67	96	2	438	43	13	13	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308736--308873	72	1.9	71	83	1	177	36	7	12	43	1.72
311095--311210	52	2.2	52	83	6	146	36	22	10	31	1.88
316081--316131	24	2.1	24	92	0	84	58	11	7	21	1.58
316872--316969	23	4.2	23	82	7	117	45	22	20	11	1.82
320425--320499	24	3.1	24	94	0	123	57	10	9	22	1.61

Tables:   1

The End!