Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013102.1 Kokia drynarioides strain JFW-HI SEQ_128120, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108682
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 5 characters in sequence are not A, C, G, or T
Found at i:25 original size:6 final size:6
Alignment explanation
Indices: 16--178 Score: 78
Period size: 6 Copynumber: 27.2 Consensus size: 6
6 CACTAACACG
* * * * **
16 ACCACC ACCACC ACGACC -CTGACC ACCACC ACCATC ACAACC ACCATA
1 ACCACC ACCACC ACCACC AC-CACC ACCACC ACCACC ACCACC ACCACC
* ** * ** * * *
64 ACCACT ACCACC ACCATG ACCTCC ACCACC GTCACA ACCACC GCCGCC
1 ACCACC ACCACC ACCACC ACCACC ACCACC ACCACC ACCACC ACCACC
* * ** * * *
112 ACCACC ACAACC -CCGACC ACGACC ATGACC ACCACC ACAAAC ACCAAC
1 ACCACC ACCACC ACC-ACC ACCACC ACCACC ACCACC ACCACC ACCACC
* *
160 ACTACC ACGACC ACCACC A
1 ACCACC ACCACC ACCACC A
179 TCATGAGTCA
Statistics
Matches: 113, Mismatches: 40, Indels: 8
0.70 0.25 0.05
Matches are distributed among these distances:
5 2 0.02
6 109 0.96
7 2 0.02
ACGTcount: A:0.34, C:0.54, G:0.06, T:0.06
Consensus pattern (6 bp):
ACCACC
Found at i:146 original size:30 final size:30
Alignment explanation
Indices: 110--178 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
100 ACCACCGCCG
* * *
110 CCACCACCAC-AACCCCGACCACGACCATGA
1 CCACCACCACAAACACC-AACACGACCACGA
*
140 CCACCACCACAAACACCAACACTACCACGA
1 CCACCACCACAAACACCAACACGACCACGA
170 CCACCACCA
1 CCACCACCA
179 TCATGAGTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 29 0.85
31 5 0.15
ACGTcount: A:0.38, C:0.54, G:0.06, T:0.03
Consensus pattern (30 bp):
CCACCACCACAAACACCAACACGACCACGA
Found at i:2098 original size:13 final size:13
Alignment explanation
Indices: 2066--2104 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
2056 TAGCTTTAAC
*
2066 TTAGATTAATTTAGT
1 TTAGATTAA--TACT
2081 TTAGATTAATACT
1 TTAGATTAATACT
2094 TTAGATTAATA
1 TTAGATTAATA
2105 TCCTTCACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 14 0.61
15 9 0.39
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.49
Consensus pattern (13 bp):
TTAGATTAATACT
Found at i:4925 original size:73 final size:73
Alignment explanation
Indices: 4827--4966 Score: 271
Period size: 73 Copynumber: 1.9 Consensus size: 73
4817 TCTCATGATA
*
4827 ATATATATATTAGAGTACACAGTAAATTAATCGCATTATTTTAGGTTATCCACAATCTGATATAT
1 ATATATATATTAGAGTACACAGTAAATTAATCGCATTATTTTAGGTTATCCACAATCTGATAGAT
4892 ATATATAT
66 ATATATAT
4900 ATATATATATTAGAGTACACAGTAAATTAATCGCATTATTTTAGGTTATCCACAATCTGATAGAT
1 ATATATATATTAGAGTACACAGTAAATTAATCGCATTATTTTAGGTTATCCACAATCTGATAGAT
4965 AT
66 AT
4967 GCATGGAACA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 66 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (73 bp):
ATATATATATTAGAGTACACAGTAAATTAATCGCATTATTTTAGGTTATCCACAATCTGATAGAT
ATATATAT
Found at i:9155 original size:17 final size:18
Alignment explanation
Indices: 9122--9155 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
9112 TCCTTCTTTT
*
9122 ATTTTAATTATTTTATGG
1 ATTTTAATTATTATATGG
9140 ATTTTAA-TATTATATG
1 ATTTTAATTATTATATG
9156 TTGGAATTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (18 bp):
ATTTTAATTATTATATGG
Found at i:24073 original size:26 final size:25
Alignment explanation
Indices: 24029--24093 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 25
24019 TCTAAATTCT
* ** *
24029 AGCTCGATAAGAGTGTATTCTGTCTG
1 AGCTCG-TAAGAGCGTATTCCATCTA
24055 AGCTCGTAAGAGCGTTATTCCATCTA
1 AGCTCGTAAGAGCG-TATTCCATCTA
*
24081 AGCTCATAAGAGC
1 AGCTCGTAAGAGC
24094 TAAACTCTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
25 7 0.21
26 26 0.79
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (25 bp):
AGCTCGTAAGAGCGTATTCCATCTA
Found at i:24111 original size:26 final size:26
Alignment explanation
Indices: 24082--24149 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
24072 TTCCATCTAA
*
24082 GCTCATAAGAGCTAAACTCTATTTGG
1 GCTCGTAAGAGCTAAACTCTATTTGG
* * *
24108 GCTCGTAAGAGTTAAACTTTGTTTGG
1 GCTCGTAAGAGCTAAACTCTATTTGG
*
24134 GCTCGTATGAGCTAAA
1 GCTCGTAAGAGCTAAA
24150 TTTCTAGAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (26 bp):
GCTCGTAAGAGCTAAACTCTATTTGG
Found at i:27555 original size:23 final size:23
Alignment explanation
Indices: 27504--27559 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
27494 GACGTGGCAT
* * *
27504 CCAGTCAGCAGCTTCTAGAAGAT
1 CCAGTCAGCAGCTTCCAAAAGAG
27527 CCAGTCAGCAGCTTCCAAAAG-G
1 CCAGTCAGCAGCTTCCAAAAGAG
27549 CCTAGTCAGCA
1 CC-AGTCAGCA
27560 AGGATGGACG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 2 0.07
23 27 0.93
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.18
Consensus pattern (23 bp):
CCAGTCAGCAGCTTCCAAAAGAG
Found at i:29149 original size:18 final size:18
Alignment explanation
Indices: 29128--29190 Score: 58
Period size: 18 Copynumber: 3.5 Consensus size: 18
29118 TTACAAAAAA
29128 AGAGAAATTAAAAAAATG
1 AGAGAAATTAAAAAAATG
** *
29146 AGAGAAATATGTAAAATTG
1 AGAGAAAT-TAAAAAAATG
*
29165 GGA-AAATTAAAAAAATG
1 AGAGAAATTAAAAAAATG
29182 -GAAGAAATT
1 AG-AGAAATT
29191 GTAAAAAAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
16 1 0.03
17 8 0.23
18 17 0.49
19 9 0.26
ACGTcount: A:0.60, C:0.00, G:0.19, T:0.21
Consensus pattern (18 bp):
AGAGAAATTAAAAAAATG
Found at i:29196 original size:18 final size:18
Alignment explanation
Indices: 29139--29197 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
29129 GAGAAATTAA
29139 AAAAAT-GAGAGAAATATGT
1 AAAAATGGA-AGAAAT-TGT
* * **
29158 AAAATTGGGA-AAATTAA
1 AAAAATGGAAGAAATTGT
29175 AAAAATGGAAGAAATTGT
1 AAAAATGGAAGAAATTGT
29193 AAAAA
1 AAAAA
29198 AAATCATAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 5
0.70 0.19 0.12
Matches are distributed among these distances:
17 9 0.30
18 14 0.47
19 6 0.20
20 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.19, T:0.20
Consensus pattern (18 bp):
AAAAATGGAAGAAATTGT
Found at i:30618 original size:39 final size:39
Alignment explanation
Indices: 30561--30643 Score: 123
Period size: 39 Copynumber: 2.1 Consensus size: 39
30551 TTTCCTTTTT
30561 AAGTTTTAATGAAATTATAACAATAGATAAAGAAAAAAA
1 AAGTTTTAATGAAATTATAACAATAGATAAAGAAAAAAA
* * *
30600 AAGTTTTAAT-AAAGTTATAACAATGGATAAAGAATAAAT
1 AAGTTTTAATGAAA-TTATAACAATAGATAAAGAAAAAAA
30639 AAGTT
1 AAGTT
30644 GTAAAAATTC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
38 3 0.08
39 37 0.93
ACGTcount: A:0.57, C:0.02, G:0.12, T:0.29
Consensus pattern (39 bp):
AAGTTTTAATGAAATTATAACAATAGATAAAGAAAAAAA
Found at i:38966 original size:582 final size:578
Alignment explanation
Indices: 37561--39020 Score: 1818
Period size: 580 Copynumber: 2.5 Consensus size: 578
37551 CTCAAATATT
* * * * * *
37561 TCATTGAAAAGTTCACTTAGATATCTCCAAAAACACGTGTTTCTCTTTTATTTTTGCACAGTATA
1 TCATTGAAAAGTTCGCTTAAATATCTCCAAAAACATGCGTTTCTCTTTTATTTTTGAACATTATA
* * * * * *
37626 TATCACTTGTTTTGTATTGTTAAATTTCACTACAATTCAAATTTCAAATACGCGTTGAATGAAAA
66 TATCACTTGTTTTGTATTGTCAAATTTCACCACAATTCAAATTTCAGATACGTGCTGAGTGAAAA
* * * *
37691 AGGGGGAAATAAAACGT-AAAAGAGTTTGGGAGTGCTTATACAATCAAGTCTATTTCCCTTAAAT
131 AGGGGGAAACAAAACATAAAAAGAGTTTGGGA-TGCTTATACAATCATGTCTATTTCCCTTAAAC
* * * * *
37755 ACTCCACTCCCTATTTTCATCCTCACTTTCGATATAAACCATTTTCTTTGATCTTCTTCTGTGTC
195 GCTTCACTCTCTGTTTTCATCCTCACTTTCGATATAAACCATTTTCTTTGATCTTCTTTTGTGTC
* ** *
37820 AAGTTTGAGTTCCTTAATGAATTTAAACATAAAAAAATTGTTTAAAAAAATGTAAAGAAGTAACT
260 AAGTTTGAGTTCTTTAATGAATTT-AACATAAAAAAATTGTTTAAAAAAACCTAAAGAAGAAACT
* * * * * *
37885 GACGGCTACCTGTAAAAGTGCCCAATTTTTATATGTTCTCAGAATATCCTTATAAATAAAGACAA
324 AACGGCTACCAGTAAAAGTGACCAATTTCTATATGTTCTCAGAATATCCATACAAATAAAGACAA
*
37950 TAATTGCATTGCAATATACAAAAATATTGAGAGGAAAAAAAAAAAAAAAAAAGAGGTGAAGACAA
389 TAATTGCATTGCAACATACAAAAATATTGAGAGGAAAAAAAAAAAAAAAAAAGAGGTGAAGACAA
* *
38015 AATCGAGGCCGATACATTTAAAGAGTCTAAAAATAAAAAGTATCCAATTGTTTTGAGGCCAACCA
454 AATCGAGGCCGACACATTTAAAGAGTCTAAAAATAAAAAGTATCCAATTGTTTAGAGGCCAACCA
* * * *
38080 TGATACCTGCTTCCTACAATATTTGCCCATTGTTTCCATTGTAATTATGTCTCTGATCTT
519 TGATACCTGCTTCCTACAATATTTGCCCATTGTTTCAATTGTAATTATGTCTCTAACCTA
* * ** *
38140 TCATTGGAAAGTTCGCTTAAATATGTTTAAAAACATGCATTTCTCTTTTATTTTTGAACATTATA
1 TCATTGAAAAGTTCGCTTAAATATCTCCAAAAACATGCGTTTCTCTTTTATTTTTGAACATTATA
* * * * * * *
38205 TTTCACTTGTTTTGTATTGCCAAATTTCAACACAATTCAAGTTTCAGATTCGTGCCGAGTGAAGA
66 TATCACTTGTTTTGTATTGTCAAATTTCACCACAATTCAAATTTCAGATACGTGCTGAGTGAAAA
* * * ** *
38270 AGGGGAAAACAAAACATAAAAAGAGTTTGGAGGTGCTTATACATTTGTGTCTATTTCCCTTATAC
131 AGGGGGAAACAAAACATAAAAAGAGTTTGG-GATGCTTATACAATCATGTCTATTTCCCTTAAAC
* * *
38335 GCTTCACTCTCTGTTTTCATTCTCACTTTCGCTATAAACCATTTTCTTTGATTTTCTTTTGTGTC
195 GCTTCACTCTCTGTTTTCATCCTCACTTTCGATATAAACCATTTTCTTTGATCTTCTTTTGTGTC
* * * *
38400 AAGTTTGAGTTCTTTAACGAATTTAACCATAAACAAATTGTTTGAAAAAACCTAATGAAGAAACT
260 AAGTTTGAGTTCTTTAATGAATTTAA-CATAAAAAAATTGTTTAAAAAAACCTAAAGAAGAAACT
*
38465 AACGGCTGA-CAGTGAAAGT-ACCAAGTTTCTATATGTT-TCAAGAATATCCATACAAATAAATT
324 AACGGCT-ACCAGTAAAAGTGACCAA-TTTCTATATGTTCTC-AGAATATCCATACAAATAAA--
* * ** ** * * *
38527 GAGAATAATTGCATTGCAACATATAGCAATATTGAG-GGGGAAAATAAATAAAAAGAGAGGTGAA
384 GACAATAATTGCATTGCAACATACAAAAATATTGAGAGGAAAAAAAAAAAAAAAAAAGAGGTGAA
** * * ***
38591 GACAAAATCGAGGTTGACCCATTTAAAGAGTCTGAAAATATGGAGTATCCAATTCG-TTAGAGGC
449 GACAAAATCGAGGCCGACACATTTAAAGAGTCTAAAAATAAAAAGTATCCAATT-GTTTAGAGGC
* * *** *
38655 CAACCATGGTACCTGCTTCCTACCATATTTTTTCGTTGTTTCAATTGTAATTATGTCTCTAACCT
513 CAACCATGATACCTGCTTCCTACAATATTTGCCCATTGTTTCAATTGTAATTATGTCTCTAACCT
38720 A
578 A
* *
38721 TCTTTGAAAAGTTCGCTTAAATAT-TCCAAAAATATGCGTTTCTCTTTTATTTTTGAACATTATA
1 TCATTGAAAAGTTCGCTTAAATATCTCCAAAAACATGCGTTTCTCTTTTATTTTTGAACATTATA
* * * * * * * * *
38785 TATAACTTATTATGCATTATCAAATTTCACCACAATTGAACTTTTAGATACGTACTGAGTGAAAA
66 TATCACTTGTTTTGTATTGTCAAATTTCACCACAATTCAAATTTCAGATACGTGCTGAGTG-AAA
*
38850 AAGGGGGGAAACAAAACATAAAAAGAGTTTGGTGATGCTTATACAATCATGTATATTTCCCTTAA
130 AA-GGGGGAAACAAAACATAAAAAGAGTTTGG-GATGCTTATACAATCATGTCTATTTCCCTTAA
* * * *
38915 AGGCTTCACGCTCTGTTTTCATCCTCACTTTCGATATAAACCCTTTTCTTTGATCTTCTTTTGTT
193 ACGCTTCACTCTCTGTTTTCATCCTCACTTTCGATATAAACCATTTTCTTTGATCTTCTTTTGTG
*
38980 TCAAGTTTGAGTTCTTTAATGAATTTATACATAAATAAATT
258 TCAAGTTTGAGTTCTTTAATGAATTTA-ACATAAAAAAATT
39021 AAAAAAATCT
Statistics
Matches: 745, Mismatches: 124, Indels: 21
0.84 0.14 0.02
Matches are distributed among these distances:
579 128 0.17
580 275 0.37
581 160 0.21
582 181 0.24
583 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (578 bp):
TCATTGAAAAGTTCGCTTAAATATCTCCAAAAACATGCGTTTCTCTTTTATTTTTGAACATTATA
TATCACTTGTTTTGTATTGTCAAATTTCACCACAATTCAAATTTCAGATACGTGCTGAGTGAAAA
AGGGGGAAACAAAACATAAAAAGAGTTTGGGATGCTTATACAATCATGTCTATTTCCCTTAAACG
CTTCACTCTCTGTTTTCATCCTCACTTTCGATATAAACCATTTTCTTTGATCTTCTTTTGTGTCA
AGTTTGAGTTCTTTAATGAATTTAACATAAAAAAATTGTTTAAAAAAACCTAAAGAAGAAACTAA
CGGCTACCAGTAAAAGTGACCAATTTCTATATGTTCTCAGAATATCCATACAAATAAAGACAATA
ATTGCATTGCAACATACAAAAATATTGAGAGGAAAAAAAAAAAAAAAAAAGAGGTGAAGACAAAA
TCGAGGCCGACACATTTAAAGAGTCTAAAAATAAAAAGTATCCAATTGTTTAGAGGCCAACCATG
ATACCTGCTTCCTACAATATTTGCCCATTGTTTCAATTGTAATTATGTCTCTAACCTA
Found at i:40221 original size:528 final size:531
Alignment explanation
Indices: 39452--40429 Score: 1295
Period size: 528 Copynumber: 1.8 Consensus size: 531
39442 AAAATAACGG
*
39452 CTCATAGTAAAAGTTCCAAGTTTCTATATGTTTCTAGAATATCCATATAAATAAATAGAGAGTAA
1 CTCACAGTAAAAGTTCCAAGTTTCTATATGTTTCTAGAATATCCATATAAATAAATAGAGAGTAA
*
39517 TTGCATTCCAACATATAGAAATATTGAAGGGAAAAAATAAATAAAAAGAGAGTGAAGAAAAAAAC
66 TTGCATTCCAACATATAGAAATATAGAAGGGAAAAAATAAATAAAAAGAGAGTGAAGAAAAAAAC
* ** *
39582 GAGGCTGACCAATTTAAAGAGTCTCAAAATGGAAAGTATCAAATTAGTTAGAGGCTAACCATGAT
131 GAGGCTGACCAATTAAAAGAGTCTCAAAATACAAAGTATCAAATTAGTTAGAGGCTAACCAAGAT
* * * ** *
39647 ATCTGCTTCCTACCATATTTGATCGTTATTTCCATTGTAATTATGACTCTAATCTTTCATTGGAA
196 ACCTACTTCCTACCAAATTTGATCGTTATTTCCATTGTAATTATGACTCTAAAATTTCATTCGAA
* *
39712 AGTTCG-CTTAAATATCT-TAAAAATCATGT-ATT-TCTCTT-TTATTTTTGAACATTATATATC
261 AGGT-GACTTAAATATCTCCAAAAA-CATGTGATTCTCTCTTCTTATTTTTGAACATTATATAT-
* * * * * *
39772 ACTT-GTTTTGCATTGTCAAATTTCAACCCAACTCAAGTTTTAGATTCGTGCCGAGTG-AAAAA-
323 AATTCGTTTTCCATTGTAAAATTTCAACACAACTCAAGTTTTAGATACATGCCGAGTGAAAAAAT
* * * *
39834 GGAGAGAAACAGAACATTAAAAGAGTTTGAAGGCGCTTATACATTC-GTGTCTATTTCCCTTAAA
388 GGA-A-AAACAAAACATAAAAAGAGTTTGAAGGCGCTTATACAATCGGT-TCTATTTCACTTAAA
39898 TGAATTATTTTGTGTCTATTTTGAGTTCTTTAATGAATTTATACTTAAATAAATTGAAAAAATCT
450 TGAATTATTTTGTGTCTATTTTGAGTTCTTTAATGAATTTATACTTAAATAAATTGAAAAAATCT
39963 TAAGAAGAAAGTGACGA
515 TAAGAAGAAAGTGACGA
*
39980 CTCACAGTAAAA-TTGCCAAGTTTCTATATGTTTCTAGAATATCCATATAAATAAATAGAGGGTA
1 CTCACAGTAAAAGTT-CCAAGTTTCTATATGTTTCTAGAATATCCATATAAATAAATAGAGAGTA
* * * * *
40044 ATTGCATTGCAACATATAGAAATATAGAGGGGGAAAAATAAATAAAAGGAGAGGTGAAGACAAAA
65 ATTGCATTCCAACATATAGAAATATAGAAGGGAAAAAATAAATAAAAAGAGA-GTGAAGAAAAAA
* * * * *
40109 TCGAGGCTGACCCATTAAAATAGT-TGGAAAATACAAAGTATCCAATT-GTTTAGAGG-TCAACC
129 ACGAGGCTGACCAATTAAAAGAGTCT-CAAAATACAAAGTATCAAATTAG-TTAGAGGCT-AACC
* *
40171 AAGATACCTACTTCCTACCAAATTTG-TCTGTTGTTTCCA-TG-AATTTATGACTTTAAAATTTC
191 AAGATACCTACTTCCTACCAAATTTGATC-GTTATTTCCATTGTAA-TTATGACTCTAAAATTTC
* * * *
40233 TTTCGAAAGGTGACTTAAATATCTCCAAAAACATGTGTTTCTCTCTTCTTTTTTTTGAATATTAT
254 ATTCGAAAGGTGACTTAAATATCTCCAAAAACATGTGATTCTCTCTTCTTATTTTTGAACATTAT
* *
40298 ATATAATTCGTTTTCCATTGTAAAATTTCAACACAATTCAAGTTTTAGATACATGTCGAGTGAAA
319 ATATAATTCGTTTTCCATTGTAAAATTTCAACACAACTCAAGTTTTAGATACATGCCGAGTG-AA
* ** *
40363 AAAATGGAAAAATAAAACATAAAAAGAGTTTGGGGGTGCTTATACAATCGGTTCTATTTCACTTA
383 AAAATGGAAAAACAAAACATAAAAAGAGTTTGAAGGCGCTTATACAATCGGTTCTATTTCACTTA
40428 AA
448 AA
40430 GGCTTCACTC
Statistics
Matches: 386, Mismatches: 47, Indels: 30
0.83 0.10 0.06
Matches are distributed among these distances:
527 5 0.01
528 152 0.39
529 97 0.25
530 9 0.02
531 65 0.17
532 47 0.12
533 8 0.02
534 3 0.01
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (531 bp):
CTCACAGTAAAAGTTCCAAGTTTCTATATGTTTCTAGAATATCCATATAAATAAATAGAGAGTAA
TTGCATTCCAACATATAGAAATATAGAAGGGAAAAAATAAATAAAAAGAGAGTGAAGAAAAAAAC
GAGGCTGACCAATTAAAAGAGTCTCAAAATACAAAGTATCAAATTAGTTAGAGGCTAACCAAGAT
ACCTACTTCCTACCAAATTTGATCGTTATTTCCATTGTAATTATGACTCTAAAATTTCATTCGAA
AGGTGACTTAAATATCTCCAAAAACATGTGATTCTCTCTTCTTATTTTTGAACATTATATATAAT
TCGTTTTCCATTGTAAAATTTCAACACAACTCAAGTTTTAGATACATGCCGAGTGAAAAAATGGA
AAAACAAAACATAAAAAGAGTTTGAAGGCGCTTATACAATCGGTTCTATTTCACTTAAATGAATT
ATTTTGTGTCTATTTTGAGTTCTTTAATGAATTTATACTTAAATAAATTGAAAAAATCTTAAGAA
GAAAGTGACGA
Found at i:41084 original size:587 final size:584
Alignment explanation
Indices: 39956--41088 Score: 1344
Period size: 582 Copynumber: 1.9 Consensus size: 584
39946 ATAAATTGAA
* * * * *
39956 AAAATCTTAAGAAGAAAGTGACGACTCACAGTAAAATTGCCAAGTTTCTATATGTTTCTAGAATA
1 AAAATCTCAAGAAGAAAGTGACGACTCACAATAAAACTGCCAAGTTTCTATATGTTTCCAAAATA
* * *
40021 TCCATATAAATAAATAGAGGGTAATTGCATTGCAACATATAGAAATATAGAGGGGGAAAAATAAA
66 TCCATATAAATAAATAGAGAGTAACTGCATTGCAACATATAGAAATATAGAGAGGGAAAAATAAA
* * * *
40086 TAAAAGGAGAGGTGAAGACAAAATCGAGGCTGACCCATTAAAATAGTTGGAAAATACAAAGTATC
131 TAAAAAGAGAGGTAAAGACAAAATCGAGGCTGACCCATTAAAAGAGCTGGAAAATACAAAGTATC
* *
40151 CAATTGTTTAGAGGTCAACCAAGATACCTACTTCCTACCAAATTTGTCTGTTGTTTCCATGAATT
196 CAATTGTTTAGAGGTCAACCAAGATACCTACTTCCTACCAAATTTGTCCGTTGTTTCCATGAATA
* * *
40216 TATGACTTTAAAATTTCTTTCGAAAGGTGACTTAAATATCTCCAAAAACATGTGTTTCTCTCTTC
261 TATGACTTTAAAATTTCATTCGAAAAGTCACTTAAATATCTCCAAAAACATGTGTTTCTCTCTTC
* * *
40281 TTTTTTTTGAATATTATATATAATTCGTTTTCCATTGTAAAATTTCAACACAATTCAAGTTTTAG
326 TTTTTTTTAAATATTATATATAATTCGTTTGCCATTGTAAAATTTCAACACAATTCAAGTTTTAA
* * * * *
40346 ATACATGTCGAGTGAAAAAAATGGAAAAATAAAACATAAAAAGAGTTTGGGGGTGCTTATACAAT
391 AGACATATCAAGTGAAAAAAATGGAAAAACAAAACATAAAAAGAGTTTGGGGGTGCTTACACAAT
* * * *
40411 CGGTTCTATTTCACTTAAAGGCTTCACTCCCTATTTTCATGCTCTCTTTCGATATAAACTATTTT
456 CGGTTATATTTCACTTAAAGGCTTCACTCCCTATTTTCATCCTCACTTTCGATATAAACCATTTT
*
40476 CTTCGATCTTATTTTGTGTCAAGTTTGAGCTCTATAGTGATTTTATACAGAATTTTTTTTAAAG
521 CTTCGATCTTATTTAGTGTCAAGTTTGAGCTCTATAGTGATTTTATACAGAATTTTTTTTAAAG
* * *
40540 AAAATCTCAAGAAGAAATTGATGACTCACAATAAAACTGCCAAGTTTCTGTATGTTTCCAAAATA
1 AAAATCTCAAGAAGAAAGTGACGACTCACAATAAAACTGCCAAGTTTCTATATGTTTCCAAAATA
* *
40605 TCCATATAAATAAATAGAGAGTAACTGCATTGCAA-ATATAGCAATATTGAGAGGG-AAAATAAA
66 TCCATATAAATAAATAGAGAGTAACTGCATTGCAACATATAGAAATATAGAGAGGGAAAAATAAA
* * * * *
40668 TAAAAAGAGAGGTAAAGACAAAATTGAGGCTGGCCTATTTAAAGAGGCT-GAAAATGA-AGAGTA
131 TAAAAAGAGAGGTAAAGACAAAATCGAGGCTGACCCATTAAAAGA-GCTGGAAAAT-ACAAAGTA
** * * * *
40731 TCCAATTTGTTT-GAGG-CTAACCATTATACCTGCTTCTTACCATATTTGTCCGTTGTTTCTATT
194 TCCAA-TTGTTTAGAGGTC-AACCAAGATACCTACTTCCTACCAAATTTGTCCGTTGTTTCCA-T
* **
40794 GTAA-ATATGACTTTAATATTTCATT-GAAAAGTACACTTAAATATCTCCAAATGCATGTGTTTC
256 G-AATATATGACTTTAAAATTTCATTCGAAAAGT-CACTTAAATATCTCCAAAAACATGTGTTTC
* * * * *
40857 TCT-TT-TATTTTTTTAACAT-TTA-ATATCACTT-GTTTGGCATTGTCAAATTTCACCAGAATT
319 TCTCTTCT-TTTTTTTAA-ATATTATATAT-AATTCGTTTGCCATTGTAAAATTTCAACACAATT
* * * * * * ** ** *
40917 CAGGTTTCTTTAAAGGCTTATACAATCTTG-TATATTTGAGGGAAACAAAACATAAAATA-TGTT
381 CAAG--T-TTTAAAGACATAT-CAA--GTGAAAAAAATG-GAAAAACAAAACATAAAA-AGAGTT
* * *
40980 TGGGGGTGCTTACACAATC-TTGTATATTTCCCTTAAAGGCTTCACTCCCTGTTTTCATCCTCAC
438 TGGGGGTGCTTACACAATCGGT-TATATTTCACTTAAAGGCTTCACTCCCTATTTTCATCCTCAC
* * *
41044 TTTCGATATCAACCATTTTCTTTGATCTTGTTTAGTGTCAAGTTT
502 TTTCGATATAAACCATTTTCTTCGATCTTATTTAGTGTCAAGTTT
41089 TTCCATTCTT
Statistics
Matches: 459, Mismatches: 71, Indels: 35
0.81 0.13 0.06
Matches are distributed among these distances:
581 33 0.07
582 124 0.27
583 79 0.17
584 100 0.22
585 2 0.00
586 5 0.01
587 115 0.25
588 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (584 bp):
AAAATCTCAAGAAGAAAGTGACGACTCACAATAAAACTGCCAAGTTTCTATATGTTTCCAAAATA
TCCATATAAATAAATAGAGAGTAACTGCATTGCAACATATAGAAATATAGAGAGGGAAAAATAAA
TAAAAAGAGAGGTAAAGACAAAATCGAGGCTGACCCATTAAAAGAGCTGGAAAATACAAAGTATC
CAATTGTTTAGAGGTCAACCAAGATACCTACTTCCTACCAAATTTGTCCGTTGTTTCCATGAATA
TATGACTTTAAAATTTCATTCGAAAAGTCACTTAAATATCTCCAAAAACATGTGTTTCTCTCTTC
TTTTTTTTAAATATTATATATAATTCGTTTGCCATTGTAAAATTTCAACACAATTCAAGTTTTAA
AGACATATCAAGTGAAAAAAATGGAAAAACAAAACATAAAAAGAGTTTGGGGGTGCTTACACAAT
CGGTTATATTTCACTTAAAGGCTTCACTCCCTATTTTCATCCTCACTTTCGATATAAACCATTTT
CTTCGATCTTATTTAGTGTCAAGTTTGAGCTCTATAGTGATTTTATACAGAATTTTTTTTAAAG
Found at i:43779 original size:15 final size:15
Alignment explanation
Indices: 43761--43794 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
43751 CTATGTATAT
43761 GATCCTCAGACTTGA
1 GATCCTCAGACTTGA
*
43776 GATCCTCAGATTTGA
1 GATCCTCAGACTTGA
43791 GATC
1 GATC
43795 ATCATTATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (15 bp):
GATCCTCAGACTTGA
Found at i:44675 original size:123 final size:121
Alignment explanation
Indices: 44541--45028 Score: 608
Period size: 123 Copynumber: 4.0 Consensus size: 121
44531 ATTTTTTTAA
* *
44541 AATATTAAAACATGCATA-TTAATATCCATTGAGAAGTATATAATAGTTTTAATAAACCTTCCAT
1 AATATTAAAACATGGA-AGTTAATATCCATTGAGAAGGATATAAT-GTTTTAATAAACCTTCCAT
* * *
44605 ATATTTCTCTAAAGAAATAATTCCATTTTAATATGAGATGTTAAATAAAAAGAAATTG
64 ATATTTCTATAAAGAAATAATTTCATTTTAATATGAGATATTAAATAAAAAGAAATTG
* * * * *
44663 AATATTACAAACATGGAAATTAATATCCTTTTCAAAAGGATATAATGTTTTAATAAACCTTCTAT
1 AATATTA-AAACATGGAAGTTAATATCC-ATTGAGAAGGATATAATGTTTTAATAAACCTTCCAT
* * * *
44728 ATATTTCTATAAAAAAATATTTTCATTTTAATATGAGATATTAAATAAAAGGAAATTT
64 ATATTTCTATAAAGAAATAATTTCATTTTAATATGAGATATTAAATAAAAAGAAATTG
44786 AATATTAAAAACATGGAAGTTAATAT-CATTTTG-GAAAGGATATAATGTTTTAATAAACCTTCC
1 AATATT-AAAACATGGAAGTTAATATCCA--TTGAG-AAGGATATAATGTTTTAATAAACCTTCC
* * * * *
44849 ATATATTTCTCTAAAGGAATATTTTCGTTTTAATATGAGATATTAAATAAAATA-AAAATG
62 ATATATTTCTATAAAGAAATAATTTCATTTTAATATGAGATATTAAATAAAA-AGAAATTG
**
44909 AATATTAAAACATGGAAGTTAATATACTTTTCGA-AAGGATATAATGGTTTTAATAAACCTTCCA
1 AATATTAAAACATGGAAGTTAATAT-CCATT-GAGAAGGATATAAT-GTTTTAATAAACCTTCCA
* * * *
44973 TATATTTCTATAAAGGAATAATTTCGTTTTAATATGAGAAATTAAATAAAAGGAAA
63 TATATTTCTATAAAGAAATAATTTCATTTTAATATGAGATATTAAATAAAAAGAAA
45029 GATGGCAGAA
Statistics
Matches: 321, Mismatches: 31, Indels: 27
0.85 0.08 0.07
Matches are distributed among these distances:
122 41 0.13
123 266 0.83
124 14 0.04
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (121 bp):
AATATTAAAACATGGAAGTTAATATCCATTGAGAAGGATATAATGTTTTAATAAACCTTCCATAT
ATTTCTATAAAGAAATAATTTCATTTTAATATGAGATATTAAATAAAAAGAAATTG
Found at i:44803 original size:22 final size:21
Alignment explanation
Indices: 44765--44811 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
44755 TTAATATGAG
*
44765 ATATTAAATAAAAGGAAATTTA
1 ATATTAAATAAAAGG-AAGTTA
*
44787 ATATTAAA-AACATGGAAGTTA
1 ATATTAAATAA-AAGGAAGTTA
44808 ATAT
1 ATAT
44812 CATTTTGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.55, C:0.02, G:0.11, T:0.32
Consensus pattern (21 bp):
ATATTAAATAAAAGGAAGTTA
Found at i:44978 original size:246 final size:247
Alignment explanation
Indices: 44578--45028 Score: 728
Period size: 246 Copynumber: 1.8 Consensus size: 247
44568 ATTGAGAAGT
44578 ATATAATAGTTTTAATAAACCTTCCATATATTTCTCTAAAGAAATAATTCCATTTTAATATGAGA
1 ATATAATAGTTTTAATAAACCTTCCATATATTTCTCTAAAGAAATAATTCCATTTTAATATGAGA
* * *
44643 TGTTAAATAAAAAGAAATTGAATATTACAAACATGGAAATTAATATCCTTTTCAAAAGGATATAA
66 TATTAAATAAAAAGAAAATGAATATTACAAACATGGAAATTAATATACTTTTCAAAAGGATATAA
* * *
44708 TGTTTTAATAAACCTTCTATATATTTCTATAAAAAAATATTTTCATTTTAATATGAGATATTAAA
131 TGTTTTAATAAACCTTCCATATATTTCTATAAAAAAATAATTTCATTTTAATATGAGAAATTAAA
44773 TAAAAGGAAATTTAATATTAAAAACATGGAAGTTAATATCATTTTGGAAAGG
196 TAAAAGGAAATTTAATATTAAAAACATGGAAGTTAATATCATTTTGGAAAGG
* * * *
44825 ATATAAT-GTTTTAATAAACCTTCCATATATTTCTCTAAAGGAATATTTTCGTTTTAATATGAGA
1 ATATAATAGTTTTAATAAACCTTCCATATATTTCTCTAAAGAAATAATTCCATTTTAATATGAGA
* *
44889 TATTAAATAAAATA-AAAATGAATATTA-AAACATGGAAGTTAATATACTTTTCGAAAGGATATA
66 TATTAAATAAAA-AGAAAATGAATATTACAAACATGGAAATTAATATACTTTTCAAAAGGATATA
** *
44952 ATGGTTTTAATAAACCTTCCATATATTTCTATAAAGGAATAATTTCGTTTTAATATGAGAAATTA
130 AT-GTTTTAATAAACCTTCCATATATTTCTATAAAAAAATAATTTCATTTTAATATGAGAAATTA
45017 AATAAAAGGAAA
194 AATAAAAGGAAA
45029 GATGGCAGAA
Statistics
Matches: 187, Mismatches: 15, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
245 35 0.19
246 144 0.77
247 8 0.04
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (247 bp):
ATATAATAGTTTTAATAAACCTTCCATATATTTCTCTAAAGAAATAATTCCATTTTAATATGAGA
TATTAAATAAAAAGAAAATGAATATTACAAACATGGAAATTAATATACTTTTCAAAAGGATATAA
TGTTTTAATAAACCTTCCATATATTTCTATAAAAAAATAATTTCATTTTAATATGAGAAATTAAA
TAAAAGGAAATTTAATATTAAAAACATGGAAGTTAATATCATTTTGGAAAGG
Found at i:49397 original size:20 final size:20
Alignment explanation
Indices: 49372--49415 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
49362 TAATTTAGCC
*
49372 ATTTTTATTTTTACTTTAAT
1 ATTTTTATTTTTAATTTAAT
49392 ATTTTTATTTTTAATTTAAT
1 ATTTTTATTTTTAATTTAAT
49412 -TTTT
1 ATTTT
49416 AAATTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (20 bp):
ATTTTTATTTTTAATTTAAT
Found at i:49421 original size:20 final size:20
Alignment explanation
Indices: 49372--49423 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
49362 TAATTTAGCC
* *
49372 ATTTTTATTTTTACTTTAAT
1 ATTTTAATTTTTAATTTAAT
*
49392 ATTTTTATTTTTAATTTAAT
1 ATTTTAATTTTTAATTTAAT
49412 -TTTTAAATTTTT
1 ATTTT-AATTTTT
49424 TATTCTTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 4 0.14
20 25 0.86
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (20 bp):
ATTTTAATTTTTAATTTAAT
Found at i:51789 original size:30 final size:30
Alignment explanation
Indices: 51741--52070 Score: 130
Period size: 30 Copynumber: 11.2 Consensus size: 30
51731 AATTTGAAAT
51741 TTTTAT-AAGTTCGAGGGTTAAAAATGTAAA
1 TTTTATGAAGTTCG-GGGTTAAAAATGTAAA
* *
51771 TTTTATGAAGTTCGGGGTTAAAAATGGAAT
1 TTTTATGAAGTTCGGGGTTAAAAATGTAAA
51801 TTTTA-GAAGTTCGGTGG-T-AAAATGGT-AA
1 TTTTATGAAGTTCGG-GGTTAAAAAT-GTAAA
* *
51829 TATTACTGAAGTTCGAGGTTAAAAAT-TAAAA
1 TTTTA-TGAAGTTCGGGGTTAAAAATGT-AAA
** * *
51860 TTTTA--AACATCTGAGGGGT-AAAATGGTAAT
1 TTTTATGAAGTTC-G-GGGTTAAAAAT-GTAAA
* * *
51890 TTTTATGGAGCTCGGGGTTAAAAAT-TGAA
1 TTTTATGAAGTTCGGGGTTAAAAATGTAAA
* **
51919 TTTT-TAGACA-TTCGGGGGTAAAACGGT-AA
1 TTTTAT-GA-AGTTCGGGGTTAAAAATGTAAA
* *
51948 TTTT-TGGAAAGTTCGGGATCAAAAATG-AAA
1 TTTTAT-G-AAGTTCGGGGTTAAAAATGTAAA
51978 TTTTA-GACA-TTCGAGGG-T-AAAATG-ATAA
1 TTTTATGA-AGTTCG-GGGTTAAAAATGTA-AA
** * *
52006 TTTTCAAAAATTTTGGGGTTAAAAAT-TAAA
1 TTTT-ATGAAGTTCGGGGTTAAAAATGTAAA
** *
52036 TTTT-TAGAAGTTTAAGGG-TAAAAATGTAAT
1 TTTTAT-GAAG-TTCGGGGTTAAAAATGTAAA
52066 TTTTA
1 TTTTA
52071 GAAAGTTTAG
Statistics
Matches: 225, Mismatches: 39, Indels: 71
0.67 0.12 0.21
Matches are distributed among these distances:
27 7 0.03
28 26 0.12
29 65 0.29
30 93 0.41
31 31 0.14
32 3 0.01
ACGTcount: A:0.37, C:0.05, G:0.22, T:0.35
Consensus pattern (30 bp):
TTTTATGAAGTTCGGGGTTAAAAATGTAAA
Found at i:51949 original size:59 final size:58
Alignment explanation
Indices: 51761--52039 Score: 264
Period size: 58 Copynumber: 4.8 Consensus size: 58
51751 TCGAGGGTTA
* * *
51761 AAAAT-GTAAATTTTATGAAGTTCGGGGTTAAAAATGGAATTTTTAGA-AGTTCGGTGGT
1 AAAATGGT-AATTTTATGAAGTTCGGGGTTAAAAATTGAAATTTTAGACA-TTCGGGGGT
* * * *
51819 AAAATGGTAATATTACTGAAGTTCGAGGTTAAAAATTAAAATTTTAAACA-TCTGAGGGGT
1 AAAATGGTAATTTTA-TGAAGTTCGGGGTTAAAAATTGAAATTTTAGACATTC-G-GGGGT
* * *
51879 AAAATGGTAATTTTTATGGAGCTCGGGGTTAAAAATTGAATTTTTAGACATTCGGGGGT
1 AAAATGGTAA-TTTTATGAAGTTCGGGGTTAAAAATTGAAATTTTAGACATTCGGGGGT
* * * *
51938 AAAACGGTAATTTT-TGGAAAGTTCGGGATCAAAAA-TGAAATTTTAGACATTCGAGGGT
1 AAAATGGTAATTTTAT-G-AAGTTCGGGGTTAAAAATTGAAATTTTAGACATTCGGGGGT
* ** * *
51996 AAAATGATAATTTTCAAAAATTTTGGGGTTAAAAATT-AAATTTT
1 AAAATGGTAATTTT-ATGAAGTTCGGGGTTAAAAATTGAAATTTT
52040 TAGAAGTTTA
Statistics
Matches: 180, Mismatches: 29, Indels: 24
0.77 0.12 0.10
Matches are distributed among these distances:
57 1 0.01
58 71 0.39
59 58 0.32
60 44 0.24
61 6 0.03
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.34
Consensus pattern (58 bp):
AAAATGGTAATTTTATGAAGTTCGGGGTTAAAAATTGAAATTTTAGACATTCGGGGGT
Found at i:51960 original size:119 final size:117
Alignment explanation
Indices: 51750--52047 Score: 302
Period size: 119 Copynumber: 2.5 Consensus size: 117
51740 TTTTTATAAG
* *
51750 TTCGAGGGTTAAAAAT-GTAAATTTTATGAAGTTCGGGGTTAAAAATGGAATTTTTAGAAGTTCG
1 TTCGAGGG-T-AAAATGGTAATTTTTATGAAGCTCGGGGTTAAAAATGGAATTTTTAGAAGTTCG
* * *
51814 GTGGTAAAATGGTAATATTACTGAAGTTCGAGG-TTAAAAATTAAAATTTTAAACA
64 GGGGTAAAACGGTAATATTACTGAAGTTCG-GGATCAAAAA-TAAAATTTTAAACA
* *
51869 -TCTGAGGGGTAAAATGGTAATTTTTATGGAGCTCGGGGTTAAAAATTGAATTTTTAGACA-TTC
1 TTC-GA-GGGTAAAATGGTAATTTTTATGAAGCTCGGGGTTAAAAATGGAATTTTTAGA-AGTTC
* * *
51932 GGGGGTAAAACGGTAAT-TT-TTGGAAAGTTCGGGATCAAAAATGAAATTTTAGACA
63 GGGGGTAAAACGGTAATATTACT-G-AAGTTCGGGATCAAAAATAAAATTTTAAACA
* * ** ** * **
51987 TTCGAGGGTAAAATGATAATTTTCAAAAATTTTGGGGTTAAAAATTAAATTTTTAGAAGTT
1 TTCGAGGGTAAAATGGTAATTTTTATGAAGCTCGGGGTTAAAAATGGAATTTTTAGAAGTT
52048 TAAGGGTAAA
Statistics
Matches: 151, Mismatches: 19, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
116 1 0.01
117 46 0.30
118 26 0.17
119 74 0.49
120 4 0.03
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.35
Consensus pattern (117 bp):
TTCGAGGGTAAAATGGTAATTTTTATGAAGCTCGGGGTTAAAAATGGAATTTTTAGAAGTTCGGG
GGTAAAACGGTAATATTACTGAAGTTCGGGATCAAAAATAAAATTTTAAACA
Found at i:52008 original size:58 final size:58
Alignment explanation
Indices: 51750--52009 Score: 192
Period size: 59 Copynumber: 4.4 Consensus size: 58
51740 TTTTTATAAG
* * * * * *
51750 TTCGAGGGTTAAAAAT-GTAAATTTTATGAAGTTCGGGGTTAAAAATGGAATTTTTAGA-A
1 TTCGAGGG-T-AAAATGGT-AATTTTATGGAGCTCGGGATCAAAAATTGAAATTTTAGACA
* * * * * *
51809 GTTCG-GTGGTAAAATGGTAATATTACTGAAGTTCGAGG-TTAAAAATTAAAATTTTAAACA
1 -TTCGAG-GGTAAAATGGTAATTTTA-TGGAGCTCG-GGATCAAAAATTGAAATTTTAGACA
* * *
51869 -TCTGAGGGGTAAAATGGTAATTTTTATGGAGCTCGGGGTTAAAAATTGAATTTTTAGACA
1 TTC-GA-GGGTAAAATGGTAA-TTTTATGGAGCTCGGGATCAAAAATTGAAATTTTAGACA
* * *
51929 TTCGGGGGTAAAACGGTAATTTT-TGGAAAGTTCGGGATCAAAAA-TGAAATTTTAGACA
1 TTCGAGGGTAAAATGGTAATTTTATGG--AGCTCGGGATCAAAAATTGAAATTTTAGACA
*
51987 TTCGAGGGTAAAATGATAATTTT
1 TTCGAGGGTAAAATGGTAATTTT
52010 CAAAAATTTT
Statistics
Matches: 167, Mismatches: 20, Indels: 28
0.78 0.09 0.13
Matches are distributed among these distances:
57 3 0.02
58 50 0.30
59 58 0.35
60 49 0.29
61 7 0.04
ACGTcount: A:0.36, C:0.06, G:0.24, T:0.34
Consensus pattern (58 bp):
TTCGAGGGTAAAATGGTAATTTTATGGAGCTCGGGATCAAAAATTGAAATTTTAGACA
Found at i:52079 original size:30 final size:29
Alignment explanation
Indices: 51934--52090 Score: 101
Period size: 29 Copynumber: 5.3 Consensus size: 29
51924 AGACATTCGG
** * *
51934 GGGTAAAACGGTAATTTTTGGAAAG-TTC
1 GGGTAAAAATGTAATTTTTAGAAAGTTTA
* * *
51962 GGGATCAAAAATG-AAATTTTAGACA-TTCGA
1 GGG-T-AAAAATGTAATTTTTAGAAAGTT-TA
* * * *
51992 GGGT-AAAATGATAATTTTCAAAAATTTTG
1 GGGTAAAAATG-TAATTTTTAGAAAGTTTA
52021 GGGTTAAAAAT-TAAATTTTTAG-AAGTTTAA
1 GGG-TAAAAATGT-AATTTTTAGAAAGTTT-A
52051 GGGTAAAAATGTAATTTTTAGAAAGTTTA
1 GGGTAAAAATGTAATTTTTAGAAAGTTTA
52080 GGGTCAAAAAT
1 GGGT-AAAAAT
52091 AGAGTTTTGG
Statistics
Matches: 98, Mismatches: 17, Indels: 26
0.70 0.12 0.18
Matches are distributed among these distances:
27 6 0.06
28 3 0.03
29 50 0.51
30 34 0.35
31 5 0.05
ACGTcount: A:0.41, C:0.04, G:0.21, T:0.34
Consensus pattern (29 bp):
GGGTAAAAATGTAATTTTTAGAAAGTTTA
Found at i:52089 original size:59 final size:58
Alignment explanation
Indices: 51904--52090 Score: 164
Period size: 59 Copynumber: 3.2 Consensus size: 58
51894 ATGGAGCTCG
* * ** ** * *
51904 GGGTTAAAAATTGAATTTTTAGACATTCGGGGGTAAAACGGTAATTTTTGGAAAG-TTC
1 GGGTCAAAAA-TGAAATTTTAGACATTCAAGGGTAAAAATGTAATTTTTAGAAAGTTTA
* * * * *
51962 GGGATCAAAAATGAAATTTTAGACATTCGAGGGT-AAAATGATAATTTTCAAAAATTTTG
1 GGG-TCAAAAATGAAATTTTAGACATTCAAGGGTAAAAATG-TAATTTTTAGAAAGTTTA
* * *
52021 GGGTTAAAAATTAAATTTTTAGA-AGTTTAAGGGTAAAAATGTAATTTTTAGAAAGTTTA
1 GGGTCAAAAATGAAA-TTTTAGACA-TTCAAGGGTAAAAATGTAATTTTTAGAAAGTTTA
52080 GGGTCAAAAAT
1 GGGTCAAAAAT
52091 AGAGTTTTGG
Statistics
Matches: 104, Mismatches: 19, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
57 4 0.04
58 45 0.43
59 49 0.47
60 6 0.06
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.34
Consensus pattern (58 bp):
GGGTCAAAAATGAAATTTTAGACATTCAAGGGTAAAAATGTAATTTTTAGAAAGTTTA
Found at i:52098 original size:29 final size:29
Alignment explanation
Indices: 52037--52123 Score: 81
Period size: 30 Copynumber: 2.9 Consensus size: 29
52027 AAAATTAAAT
*
52037 TTTTAG-AAGTTTAAGGGT-AAAAATGTAAT
1 TTTTAGAAAGTTT-AGGGTCAAAAATG-AAG
52066 TTTTAGAAAGTTTAGGGTCAAAAAT-AGAG
1 TTTTAGAAAGTTTAGGGTCAAAAATGA-AG
* *
52095 TTTTGGAAAAGTTCAGGGTCAAAACATGA
1 TTTTAG-AAAGTTTAGGGTCAAAA-ATGA
52124 TTTTTGGACA
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
28 1 0.02
29 17 0.35
30 28 0.57
31 2 0.04
32 1 0.02
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.32
Consensus pattern (29 bp):
TTTTAGAAAGTTTAGGGTCAAAAATGAAG
Found at i:52106 original size:30 final size:30
Alignment explanation
Indices: 52072--52131 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
52062 TAATTTTTAG
*
52072 AAAGTTTAGGGTCAAAA-ATAGAGTTTTGGA
1 AAAGTTCAGGGTCAAAACAT-GAGTTTTGGA
*
52102 AAAGTTCAGGGTCAAAACATGATTTTTGGA
1 AAAGTTCAGGGTCAAAACATGAGTTTTGGA
52132 CAGTATAGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
AAAGTTCAGGGTCAAAACATGAGTTTTGGA
Found at i:52141 original size:29 final size:28
Alignment explanation
Indices: 52064--52141 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 28
52054 TAAAAATGTA
*
52064 ATTTTTAGAAAGTTTAGGGTCAAAAATAG
1 ATTTTTGGAAAG-TTAGGGTCAAAAATAG
*
52093 AGTTTTGGAAAAGTTCAGGGTCAAAACAT-G
1 ATTTTTGG-AAAGTT-AGGGTCAAAA-ATAG
*
52123 ATTTTTGGACAGTATAGGG
1 ATTTTTGGAAAGT-TAGGG
52142 ACCTTCAGGG
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
29 16 0.39
30 23 0.56
31 2 0.05
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (28 bp):
ATTTTTGGAAAGTTAGGGTCAAAAATAG
Found at i:53258 original size:3 final size:3
Alignment explanation
Indices: 53250--53304 Score: 74
Period size: 3 Copynumber: 18.3 Consensus size: 3
53240 ACTTTCCTTT
* * **
53250 TTA TTA TTA TTA ATA ATA CCA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
53298 TTA TTA T
1 TTA TTA T
53305 AGTGCTATTA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:54050 original size:16 final size:17
Alignment explanation
Indices: 53993--54064 Score: 76
Period size: 17 Copynumber: 4.4 Consensus size: 17
53983 TTTTATTTAC
* *
53993 TAAATTTTAATTTAAAA
1 TAAATTTAAACTTAAAA
*
54010 TAAATTTAAACTCAAAA
1 TAAATTTAAACTTAAAA
* * *
54027 CAAGTTT-AATTTAAAA
1 TAAATTTAAACTTAAAA
54043 TAAATTTAAACTT-AAA
1 TAAATTTAAACTTAAAA
54059 TAAATT
1 TAAATT
54065 AAAATTTGAG
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
16 21 0.48
17 23 0.52
ACGTcount: A:0.54, C:0.06, G:0.01, T:0.39
Consensus pattern (17 bp):
TAAATTTAAACTTAAAA
Found at i:55104 original size:377 final size:377
Alignment explanation
Indices: 54408--55149 Score: 806
Period size: 377 Copynumber: 2.0 Consensus size: 377
54398 CATTTAAAGA
*
54408 GTCTGAAAATGAAAAGTATCCAATTGGTTAAAGGCCAACAATGATACTTGCTCCCTACCATATTT
1 GTCTGAAAATGAAAAGAATCCAATTGGTTAAAGGCCAACAATGATACTTGCTCCCTACCATATTT
*** * **
54473 GTCTATTGTTTCCATTTTAATATTGACTCTAATCTTTCATTGGAAAGTTCCCTTAAATATTTTCA
66 GTCTATTGTTTCCACAGTAATATCGACTCTAATCTTTCATTGGAAAGTTCCCTTAAATATTCACA
* * * * *
54538 AAAACCTTAATTTTTGTTTTATTTTTGAACATTATATACCACTTGTTTTGCATTGTCAACTTTCA
131 AAAA-CATAATTTTTCTTCTATTTTTGAACATTATATACCACTTATTTTGCATTGTCAAATTTCA
* * ** * * * *
54603 CCACGATTCATGTTTTCTATACGCACTGAGTGAATAAAGGGTGGAAGAAAATCATAAAAGGAGTT
195 CCACAATTCACGTTTTCTATACGCACCAAGTGAATAAAGGGGGGAAGAAAAACATAAAAAGAATT
* ** * * *
54668 TGGGGTTCTTATACAATCATATCTATTTCCCAAAAAAGCTTCGCTCCCTATTCTCATCCTCACTT
260 TCGAATACTTATACAATCATATCTATTTACCAAAAAAGCTTCACTCCCTATTCTCATCCTCACTT
* * * * *
54733 TTTATATAAAATATTTTCTTT-ATCTTCTTTTGTTTCAAGCATTTTGTGTCAC
325 TTGATACAAAACACTTTCTTTGATCTTCTTTTGTGTCAAGCATTTTGTGTCAC
* * * * *
54785 GTCTGAAAATGCAGAGAATCCAATTGGTTAGAGGCCAACCAA-GATAAC-TGGTTCCTACCATAT
1 GTCTGAAAATGAAAAGAATCCAATTGGTTAAAGGCCAA-CAATGAT-ACTTGCTCCCTACCATAT
* * * *
54848 TTGTTTATTGTTTCCACAGTAAT-TACGACTCTAATTTTTCATTGGAATGTTCGCTTAAATA-TC
64 TTGTCTATTGTTTCCACAGTAATAT-CGACTCTAATCTTTCATTGGAAAGTTCCCTTAAATATTC
*
54911 ACAAAAA-AT-ATGTGTTTCTCTGCTACTTTTT-AACATTATATATCACTTATTTTGCATTGTCA
128 ACAAAAACATAAT-T-TTTCT-T-CTA-TTTTTGAACATTATATACCACTTATTTTGCATTGTCA
**
54973 AATTTCACCACAATAT-ACG-TTTCATATACGTGCCAAGTGAATAAAGGGGGGAA-ACAAAACAT
188 AATTTCACCACAAT-TCACGTTTTC-TATACGCACCAAGTGAATAAAGGGGGGAAGA-AAAACAT
* * * ** * * *
55035 AAAAAGAATTTACGAATACTTATACAATCGTGTTTATTTACCTTAAAGGCTTCACTCCTTGTT-T
250 AAAAAGAATTT-CGAATACTTATACAATCATATCTATTTACCAAAAAAGCTTCACTCCCTATTCT
* *
55099 CATCCTCACTTTTGATACAAACCCCTTTCTTTGATCTTCTTTTGTGTCAAG
314 CATCCTCACTTTTGATACAAAACACTTTCTTTGATCTTCTTTTGTGTCAAG
55150 TTTAACTTTT
Statistics
Matches: 299, Mismatches: 53, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
373 2 0.01
374 2 0.01
375 4 0.01
376 14 0.05
377 212 0.71
378 65 0.22
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (377 bp):
GTCTGAAAATGAAAAGAATCCAATTGGTTAAAGGCCAACAATGATACTTGCTCCCTACCATATTT
GTCTATTGTTTCCACAGTAATATCGACTCTAATCTTTCATTGGAAAGTTCCCTTAAATATTCACA
AAAACATAATTTTTCTTCTATTTTTGAACATTATATACCACTTATTTTGCATTGTCAAATTTCAC
CACAATTCACGTTTTCTATACGCACCAAGTGAATAAAGGGGGGAAGAAAAACATAAAAAGAATTT
CGAATACTTATACAATCATATCTATTTACCAAAAAAGCTTCACTCCCTATTCTCATCCTCACTTT
TGATACAAAACACTTTCTTTGATCTTCTTTTGTGTCAAGCATTTTGTGTCAC
Found at i:57294 original size:2 final size:2
Alignment explanation
Indices: 57287--57317 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
57277 TTGCTAGAAG
57287 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
57318 TTCCAAATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63540 original size:152 final size:152
Alignment explanation
Indices: 63261--63563 Score: 579
Period size: 152 Copynumber: 2.0 Consensus size: 152
63251 CTCACAATAG
*
63261 TTAATATCGAAAGAATAGAACATACCATAATAATATCAAGTACTGTAACTTCAGATCCATCATTA
1 TTAATATCGAAAGAATAGAACATACCAGAATAATATCAAGTACTGTAACTTCAGATCCATCATTA
*
63326 TGTCTTTGATCTCACTTTATTTACCTATACTCAGGGATAGAAATTTGTAAAGACACTAAATTAGC
66 TATCTTTGATCTCACTTTATTTACCTATACTCAGGGATAGAAATTTGTAAAGACACTAAATTAGC
63391 TTTCACAATTTCTATAAATCAC
131 TTTCACAATTTCTATAAATCAC
63413 TTAATATCGAAAGAATAGAACATACCAGAATAATATCAAGTACTGTAACTTCAGATCCATCATTA
1 TTAATATCGAAAGAATAGAACATACCAGAATAATATCAAGTACTGTAACTTCAGATCCATCATTA
*
63478 TATCTTTGATCTCACTTTATTTACCTATACTCAGGGATAGAAATTTGTAAAGACACTTAATTAGC
66 TATCTTTGATCTCACTTTATTTACCTATACTCAGGGATAGAAATTTGTAAAGACACTAAATTAGC
63543 TTTCACAATTTCTATAAATCA
131 TTTCACAATTTCTATAAATCA
63564 TTGTCTCATT
Statistics
Matches: 148, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
152 148 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.34
Consensus pattern (152 bp):
TTAATATCGAAAGAATAGAACATACCAGAATAATATCAAGTACTGTAACTTCAGATCCATCATTA
TATCTTTGATCTCACTTTATTTACCTATACTCAGGGATAGAAATTTGTAAAGACACTAAATTAGC
TTTCACAATTTCTATAAATCAC
Found at i:67874 original size:376 final size:374
Alignment explanation
Indices: 66486--67942 Score: 1596
Period size: 375 Copynumber: 3.9 Consensus size: 374
66476 ATGATGCATG
* * * * *** *
66486 TTTCCTACCATATTTGCCTGTTATTTTCATTGTAATTATGACTCTAATCTTTC-ATTTACAATTT
1 TTTCATACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAACGGA-AAGTT
* * * * *
66550 CGCTTAAATAT-CTTAAAAAACAT-TAGTTTCTTTATTTTATTTTTTAACATTATATA-CATCTT
65 CGCTTAAATATAC--CAAAAACATGT-GTTTC--TCTTTTATTTTTGAAAATTATTTATCA-CTT
* * ***
66612 GTTTTGCATTGTCAACTTTCACCACAATTCAAGTTTCCTATACG-AGTCGAGTGAAAAAAG-GGT
124 GTTTTGCATTGTCAAATTTCACCACAATTCAACTTTAAGATACGCA-TCGAGTGAAAAAAGAGG-
* * * * * *
66675 GGAAA-AAAACATAAAAAGGGTTTTGGGGTGTTTATACAATCATATCTACTTCTCTTAAAGGCTT
187 GGAAACAAAACAT-AAAAGAGTTTGGGGGTGCTTATACAATCATATCTATTTCCCTAAAAGGCTT
* * * *
66739 TGCTCCCTGTTTTCAACCTT-ACTTTTGATATAAACTATTTTCTTTGATCATCTTTTGTTTCAAG
251 CGCTCCCTATTTTCAA-CTTCACTTTCG--ATAAACTATTTTCTTTGATCTTCTTTTGTTTCAAG
*
66803 TATTTTGTGTCAAGTCTGAAAATACAG-ATTATCCAA----TT---GGCCAACCAAGAT-ACT
313 TATTTTGTGTCATGTCTGAAAATACAGAATT-TCCAATTGGTTAGAGGCCAACCAAGATAACT
* * * *
66857 TGCTTCCTAGCATATTTGTTTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAATGGAAAGT
1 T--TTCATACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAACGGAAAGT
* * * *
66922 TCACTTAAATATCACCAAAAACACGTGTTTCTCTTTTTTTTTTTTGAAATTTATTTATCACTTGT
64 TCGCTTAAATAT-ACCAAAAACATGTGTTTCTC--TTTTATTTTTGAAAATTATTTATCACTTGT
* * *
66987 TTTGCATTGTCAAATTTCACCGCAATTCAACTTTTAGATACGCGTCGAGTGAAAAAAGAGGGGAA
126 TTTGCATTGTCAAATTTCACCACAATTCAACTTTAAGATACGCATCGAGTGAAAAAAGAGGGGAA
* *
67052 ACAAAACATGAAAAGAGTTTGGGGGTGCTTACACAATCATATCTATTTCCCTAAAAGGCTTCAC-
191 ACAAAACAT-AAAAGAGTTTGGGGGTGCTTATACAATCATATCTATTTCCCTAAAAGGCTTCGCT
* *
67116 CTCCTATTTTCAAACTTCACCTTCGATGTAAACTATTTTCTTTCATCTTCTTTTGTTTCAAGTAT
255 C-CCTATTTTC-AACTTCACTTTCGA--TAAACTATTTTCTTTGATCTTCTTTTGTTTCAAGTAT
* * *
67181 TTTGTGTCATGTCTGAAAATATAGAATATCCAATTGGTTAGAGGCCAACCAAGAGAACT
316 TTTGTGTCATGTCTGAAAATACAGAATTTCCAATTGGTTAGAGGCCAACCAAGATAACT
*
67240 GTTTCATACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTC-ACGAAAAGTT
1 -TTTCATACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAACGGAAAGTT
* *
67304 CGCATAAATAT-CTCAAAAAACATGTGTTTCTCTTTTATTTTTGAAATTTATTTATCACTTGTTT
65 CGCTTAAATATAC-C-AAAAACATGTGTTTCTCTTTTATTTTTGAAAATTATTTATCACTTGTTT
* * * *
67368 TGCATTGTCAAATTTCACCACAATTCAACTTTAAGATACTCGTCGAGTGAAAAATGGGGGGAAAC
128 TGCATTGTCAAATTTCACCACAATTCAACTTTAAGATACGCATCGAGTGAAAAAAGAGGGGAAAC
* *
67433 AAAACATAGAAAGAGTTTGGGGGTGCTTATACAATCATGT-TGTTTCCCTAAAAGGCTTCGCTCC
193 AAAACATA-AAAGAGTTTGGGGGTGCTTATACAATCATATCTATTTCCCTAAAAGGCTTCGCTCC
* * * * *
67497 CTATTTTCAACTTCACTTTCGATAAATTGTTTTCGTTGATCTTCTTTTCTTTTAAGTATTTTGTG
257 CTATTTTCAACTTCACTTTCGATAAACTATTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTG
**
67562 TCATGTCTGAAAATGGAGAATTTCCAATTGGTTAGAGGCCAACCAAGATAACT
322 TCATGTCTGAAAATACAGAATTTCCAATTGGTTAGAGGCCAACCAAGATAACT
* * * * *
67615 ATTTCGTTCCATATTTGTCTGTTGTTTCCATTGTAATTATGGCCCTACTCTTTCAACGGAAAGTT
1 -TTTCATACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAACGGAAAGTT
67680 CGCTTAAATAATACCAAAAACATGTGTTTCTCTTTTATTTTT-AAACATTATTTATCACTTGTTT
65 CGCTTAAAT-ATACCAAAAACATGTGTTTCTCTTTTATTTTTGAAA-ATTATTTATCACTTGTTT
* * * * *
67744 TGCATTGTAAAATTTAAACACAATTCAA-GTTATAGATACGCACCGAGTGAAAAAAGAGGGGAAA
128 TGCATTGTCAAATTTCACCACAATTCAACTTTA-AGATACGCATCGAGTGAAAAAAGAGGGGAAA
* * * * * * * *
67808 CGAAACATAAAATGAGTTT-GGGTTGGTTATACAATCGTGTATATTTCTCTTAAAGG-TTCGGCT
192 CAAAACATAAAA-GAGTTTGGGGGTGCTTATACAATCATATCTATTTCCCTAAAAGGCTTC-GCT
* * * * ** * * * *
67871 CCCTGTTTTCATCCTCACTTTTGATATAAACCCTTTTCTTTAATCTTCTTTTATGTCAAGTCTTT
255 CCCTATTTTCAACTTCACTTTCG--ATAAACTATTTTCTTTGATCTTCTTTTGTTTCAAGTATTT
67936 TGTGTCA
318 TGTGTCA
67943 AGTTTAAGTT
Statistics
Matches: 935, Mismatches: 110, Indels: 75
0.83 0.10 0.07
Matches are distributed among these distances:
371 2 0.00
373 152 0.16
374 71 0.08
375 234 0.25
376 162 0.17
377 16 0.02
378 68 0.07
379 131 0.14
380 1 0.00
381 33 0.04
382 61 0.07
383 3 0.00
384 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (374 bp):
TTTCATACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAACGGAAAGTTC
GCTTAAATATACCAAAAACATGTGTTTCTCTTTTATTTTTGAAAATTATTTATCACTTGTTTTGC
ATTGTCAAATTTCACCACAATTCAACTTTAAGATACGCATCGAGTGAAAAAAGAGGGGAAACAAA
ACATAAAAGAGTTTGGGGGTGCTTATACAATCATATCTATTTCCCTAAAAGGCTTCGCTCCCTAT
TTTCAACTTCACTTTCGATAAACTATTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTCAT
GTCTGAAAATACAGAATTTCCAATTGGTTAGAGGCCAACCAAGATAACT
Found at i:68841 original size:434 final size:430
Alignment explanation
Indices: 67972--68841 Score: 1128
Period size: 431 Copynumber: 2.0 Consensus size: 430
67962 ATTTATACAT
* * * * *
67972 AAAAATTTGTTTAAAAAATCTCAAGAATAAACTAATGGCTCACAGTAAATATGACAAGTTCCTAT
1 AAAAAATTGTCTAAAAAATCTCAAGAAGAAACTAACGGCTAACAGTAAATATGACAAGTTCCTAT
* * *
68037 ATGTTTCAAGAATATCCATATAAATAAATAGAGAGTAATTGCAATGCAACATATTGCAATATTGA
66 ATGTTTCAAGAATATCCATATAAATAAATAGAGAGCAATTACAATGCAACATATAGCAATATTGA
** **
68102 GGGGAAAAATAAATAAAAAGTGAGATGAAGACAAAAATCGAGGTTGACCCATTGTAAAAGTCTAA
131 GGGGAAAAATAAATAAAAAAAGAGATGAAGACAAAAATCGAGGCAGACCCATTGTAAAAGTCTAA
* ***
68167 AAATGGAGACTATCCAATTTGTTAGAGGCCAAACATAATACATGTTTCCTACCATATTCGTCTGT
196 AAATAGAGACTATCCAATTACCTAGAGGCCAAACATAATACATGTTTCCTACCATATTCGTCTGT
* * *
68232 TGTTTCCATTGTAATTATGACTCTAATCTTTCATTGGAAATTTTGTTTAAATAACTTCAAAAACA
261 TGTTTCCATTGTAATTATGACTCTAATCTTTCATTGAAAATTTTGCTTAAATAACTTAAAAAACA
* * *
68297 TTAGTTTTTCTTTTATTTTTTAACATTAAATATCACTTGTTTTGCATTATCAACATTCACAACAA
326 GTAGTTTTTCTTTTAATTTTTAACATTAAATACCACTTGTTTTGCATTATCAACATTCACAACAA
*
68362 TTCAAGTTTCCTATATGCACCGAGTGAAAAAAGGGTGGCA
391 TTCAAGTTTCCTATACGCACCGAGTGAAAAAAGGGTGGCA
* * * *
68402 AAAAAATTGTCTAAACAATCTCAAGAAGAAAGTAACGGCTAACGGTAAA-AGTGCCAAGTTTCC-
1 AAAAAATTGTCTAAAAAATCTCAAGAAGAAACTAACGGCTAACAGTAAATA-TGACAAG-TTCCT
* * * *
68465 ATATGTTTCCAGAATATCCA-ATAATTAAATAGAGTGCAATTACATTGCAACATATAGCAATATT
64 ATATGTTTCAAGAATATCCATATAAATAAATAGAGAGCAATTACAATGCAACATATAGCAATATT
** *
68529 GAGGGGTGGAAATAAATAAAAAAAGAGAAGTGAAGAC-AAAATTGAGGCAGACCCATT-TAAAAA
129 GAGGGG-AAAAATAAATAAAAAAAGAG-A-TGAAGACAAAAATCGAGGCAGACCCATTGT-AAAA
** * * * *
68592 GTCTAAAAATAGAGTGTATCCAATTACCTAGATGCGAACCATGATACATG-TTCTCTACCATATT
190 GTCTAAAAATAGAGACTATCCAATTACCTAGAGGCCAAACATAATACATGTTTC-CTACCATATT
* * *
68656 TGTTTGTTGTTTCCATTGTAATTATGACTCTAAATCTTTCATTGAAAATTTTGCTTAAATATCTT
254 CGTCTGTTGTTTCCATTGTAATTATGACTCT-AATCTTTCATTGAAAATTTTGCTTAAATAACTT
* * * * *
68721 AAAAAATAGTAGTTTTTTTCTTTTAATTTTTAACATTATATACCACTTGTTTTGCGTTGTCAACT
318 AAAAAACAGTAG--TTTTTCTTTTAATTTTTAACATTAAATACCACTTGTTTTGCATTATCAACA
68786 TTCAGC-ACAATTCAAGTTTCCTATACG-AGCCGAGTGAAAAAAGGGGTGG-A
381 TTCA-CAACAATTCAAGTTTCCTATACGCA-CCGAGTGAAAAAA-GGGTGGCA
68836 AAAAAA
1 AAAAAA
68842 CTTAAAATGG
Statistics
Matches: 379, Mismatches: 48, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
429 45 0.12
430 86 0.23
431 105 0.28
432 46 0.12
433 1 0.00
434 89 0.23
435 7 0.02
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (430 bp):
AAAAAATTGTCTAAAAAATCTCAAGAAGAAACTAACGGCTAACAGTAAATATGACAAGTTCCTAT
ATGTTTCAAGAATATCCATATAAATAAATAGAGAGCAATTACAATGCAACATATAGCAATATTGA
GGGGAAAAATAAATAAAAAAAGAGATGAAGACAAAAATCGAGGCAGACCCATTGTAAAAGTCTAA
AAATAGAGACTATCCAATTACCTAGAGGCCAAACATAATACATGTTTCCTACCATATTCGTCTGT
TGTTTCCATTGTAATTATGACTCTAATCTTTCATTGAAAATTTTGCTTAAATAACTTAAAAAACA
GTAGTTTTTCTTTTAATTTTTAACATTAAATACCACTTGTTTTGCATTATCAACATTCACAACAA
TTCAAGTTTCCTATACGCACCGAGTGAAAAAAGGGTGGCA
Found at i:69314 original size:383 final size:382
Alignment explanation
Indices: 68649--69677 Score: 1029
Period size: 383 Copynumber: 2.7 Consensus size: 382
68639 ATGTTCTCTA
* * * ** *
68649 CCATATTTGTTTGTTGTTTCCATTGTAATTATGACTCTAAATCTTTC-ATTGAAAATTTTGCTTA
1 CCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCT-AATCTTTCAATCG-AAAGTTCACTAA
*** * * * * * *
68713 AA-TATCTTAAAAAATAGTAGTTTTTTTCTTTTAATTTT-TAACATTATATACCACTTGTTTTGC
64 AATTATCACCAAAAACA-T-GTGTTTCTC-TTTAATTTTGAAACATTATTTATCACTTGTTTTGC
* * * * *** * *** *
68776 GTTGTCAACTTTCAGCACAATTCAAGTTTCCTATACG-AGCCGAGTG--AAAAAAGGGGTGGAAA
126 ATTGTCAAATTTCACCACAATTCAACTTTTAGATACGCA-CCGAGAGAAAAAAAAAAAGAGGAAA
* * * * * * * * * * ** * *
68838 -AAAACTTAAAATGGGTTTTGGGGATGTTTATAGAATAATTTCTATTTTTCTTAAAGGCTTCGCT
190 CCAAACATAAAAAGAG-TTTGGGG-TGCTTAGACAATCATGTATATTTCCCTAAAAGGCTTCACT
* *
68902 CCCTGTTTTCAACCTCACATTCAATATAAACTGTTTTCTTTGA-CTATATTTTCTTTCAAGTATT
253 CCCTGTTTTCAACCTCACATTCAATATAAACTATTTTCTTTGATCT-TATTTTCTTCCAAGTATT
* * * * * * *
68966 TTTTGTTAAGTCTGAAAATGCAGAGTATCCAATTTGCTTAGAGGCCAACCAAGATACCTGCTTCC
317 TTGTGTCAAGTCTGAAAATGCAGAATATCCAA-TTGCTTAGAGGCCAACCAAGACAACTACTTCA
69031 TAG
381 T-G
* * * *
69034 -CATATTTGTCTGTTGTTTGCATTGTAATTATGACTCTAATCTTTCAA-CGAAATGTTCGCTTAT
1 CCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAATCGAAA-GTTCACTAAA
* *
69097 A-TATCACCAAAACCATGTGTTTCTCATTTAATTTTGAAA-TTTATTTATCACTTGTTTTGCATT
65 ATTATCACCAAAAACATGTGTTTCTC-TTTAATTTTGAAACATTATTTATCACTTGTTTTGCATT
** ***** * *
69160 GTCAAATTTCACCACAATTCAACTTTTAGATACGCGTCGAGAGAAAAAAGGGGGGGGGGAACCAA
129 GTCAAATTTCACCACAATTCAACTTTTAGATACGCACCGAGAGAAAAAAAAAAAGAGGAAACCAA
* * * * * *
69225 ATATAAAAAGAGTTTGGGGTTGGTTAGACAGTCATGTCTATTTCCCTAAAAGGCTTCACTCTCTA
194 ACATAAAAAGAGTTTGGGG-TGCTTAGACAATCATGTATATTTCCCTAAAAGGCTTCACTCCCTG
* * * * *
69290 TTTTCAACTTCACATTCGATATAAACTATTTTCTTTTATCTTCTTTTGTTCCAAGTATTTTGTGT
258 TTTTCAACCTCACATTCAATATAAACTATTTTCTTTGATCTTATTTTCTTCCAAGTATTTTGTGT
** * *
69355 CATTTCTGAAAATGCAGAATATCCAATTGGTTAGAGGCCAACCAAGACAACTATTTCATG
323 CAAGTCTGAAAATGCAGAATATCCAATTGCTTAGAGGCCAACCAAGACAACTACTTCATG
* *
69415 CCATATTTTTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAATGGAAAGTTCACTAAAA
1 CCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAATCGAAAGTTCACTAAAA
* * *
69480 TTATCTCCAAAAACATGTGTTTCTCTTTTATTTTTAAACATTATTTATCACTTGTTTTGCATTGT
66 TTATCACCAAAAACATGTGTTTCTCTTTAATTTTGAAACATTATTTATCACTTGTTTTGCATTGT
* * *
69545 CAAATTTCACCACAATTCAAGTTTTAGATACGCACCGAGTGAAAAAAAAAAAGAGGAAACGAAAC
131 CAAATTTCACCACAATTCAACTTTTAGATACGCACCGAGAGAAAAAAAAAAAGAGGAAACCAAAC
* * *
69610 ATAAAACGAGTTTGGGGTGCTTAGACAATCGTGTATATTTCCCTTAAAGGCTTCACTCCCTGTTT
196 ATAAAAAGAGTTTGGGGTGCTTAGACAATCATGTATATTTCCCTAAAAGGCTTCACTCCCTGTTT
69675 TCA
261 TCA
69678 TCATCTCTTT
Statistics
Matches: 532, Mismatches: 100, Indels: 27
0.81 0.15 0.04
Matches are distributed among these distances:
381 70 0.13
382 141 0.27
383 273 0.51
384 48 0.09
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (382 bp):
CCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCAATCGAAAGTTCACTAAAA
TTATCACCAAAAACATGTGTTTCTCTTTAATTTTGAAACATTATTTATCACTTGTTTTGCATTGT
CAAATTTCACCACAATTCAACTTTTAGATACGCACCGAGAGAAAAAAAAAAAGAGGAAACCAAAC
ATAAAAAGAGTTTGGGGTGCTTAGACAATCATGTATATTTCCCTAAAAGGCTTCACTCCCTGTTT
TCAACCTCACATTCAATATAAACTATTTTCTTTGATCTTATTTTCTTCCAAGTATTTTGTGTCAA
GTCTGAAAATGCAGAATATCCAATTGCTTAGAGGCCAACCAAGACAACTACTTCATG
Found at i:71936 original size:962 final size:953
Alignment explanation
Indices: 70455--72345 Score: 2381
Period size: 962 Copynumber: 2.0 Consensus size: 953
70445 ATATTTTTTG
* * * *
70455 AAAATTGTTTAAAAGAAATCTCAAGAAGAAATTGACCGCTCACAGTAAAAGTGCAGAGTTTCTAT
1 AAAATTGTCTAAAAGAAATCTCAAGAAGAAAGTGAACGCTCACAGTAAAAGTGCAGAGTCTCTAT
* *
70520 ATGTTTCCAGAATATCCATATAAATAAATAGAGAGTAATTGTATCGCAACATATAGCAATACCAA
66 ATGTTTCCAGAATATCCAAATAAATAAATAGAGAGTAATTGCATCGCAACATATAGCAATACCAA
* * * * *
70585 TGAGGAAAATAAATAAAAAGAGAGGTGAAAACAAAATTGAGGCTAACCCATTTAAAGAGTTTGAA
131 GGAGGAAAATAAATAAAAAGAGAAGTGAAAACAAAATTGAGGCGAACACATTTAAAGAATTTGAA
* * * * **
70650 AATACAGAATATCTAATTAGTTAAAGCCAACCATGATACCTGCTCCTTGCCATATTTGTCAGTTG
196 AATACAGAATATCCAATTACTTAAAGCAAACCATGATACATGCTCCTCACCATATTTGTCAGTTG
* * *
70715 TTTCCATTGTAATAATAACTAATCTTTCATTGGAAAGTTCGCTTAAATATTTTCGAAAACATTAA
261 TTTCCATTGTAATAATAACTAATCTTTCATTGAAAAGTTCGCTTAAATATCTTCAAAAACATTAA
* * *
70780 TTTTTGTTTTATTTTTGAACATTATATACCACTTGATTTGCATTGTCAACTTTCACCACAATTCA
326 TTTTTCTTTTATTTTTGAACATAATATACCACTTGATTTGCATTGCCAACTTTCACCACAATTCA
* *
70845 AGATTGCTATACGCAACGAGTGAATAAAGGGTGGAAGAAAAACATAAAAAGAATTTGGAGTTCTT
391 AGATTCCTATAC-CAACGAGTGAATAAACGGTGGAAGAAAAACATAAAAAGAATTTGGAGTTCTT
* * * * * **
70910 GTACAATCATGTCTATTTCCTTTATAGGCTTCTCTCCCTGTTCTAATCCTCACTTTTTATATAAA
455 ATACAATCATGTCTATTTCCTTTAAAAGCTTCGCTCCCTGTTCTAATACTCACTTTCGATATAAA
70975 CTACTTTCTTTGATATTCTTTTGTTTCAAGTATTTTGTGTCATGTCT-AAAATTGCA-AAGAATC
520 CTACTTTCTTTGATATTCTTTTGTTTCAAGTATTTTGTGTCATGTCTGAAAA-TGCAGAA-AATC
*
71038 CAATTGGTTAGAGGCC-ACCTAAGATAACTGCTTCCTACCATATTTGTCGGTAGTTTCCACTGTA
583 CAATTGGTTAGAGGCCAACC-AAGATAACTGCTTCCTACCATATTTGTCGATAGTTTCCACTGTA
* * * *
71102 ATTATGACTCTAATATTTCATTGGAATGTTCGCTTAAATATCACAAAAAACATGTATTTCTCTTT
647 ATTATGACTCTAATATTTCAATGGAAAGTTCCCATAAATATCACAAAAAACATGTATTTCTCTTT
* *
71167 TATTTTTTAACATTATTGT-TCACTTGTTTTGCATTGTCAAATTTCACTACAAGTCAAGTTTCAA
712 TATTTTTAAACATTATT-TATCACTTGTTTTGCATTGTCAAATTTCACCACAAGTCAAGTTTCAA
** ** * * *
71231 ATACGCGTCGAGTGAATAATGGTGGGGAAACAAAATATAAAA-AGAGTTTAGGGATACTTATACA
776 ATACGCACCGAGTGAA-AAAAGAGGGGAAACAAAACATAAAACA-AGTTT-GGGATACTTACACA
* *
71295 ATCGTGTTTATTTCCCTTAAAGGCTTCA-TTCCTTGTTTTCATCCTCCCTTTTGAAATAAA-CCC
838 ATCGTGTATATTTCCCTTAAAGGCTTCACTTCC-TGTTTTCATCCTCACTTTTGAAATAAACCCC
*
71358 TATGCTTTGATCTTCTTTTGTGTCAAGTTTAAGTTAAATGAATTTATTCATAA
902 T-TGCTTTGATCTTCTATTGTGTCAAGTTTAAGTTAAATGAATTTATTCATAA
*
71411 AAAATTGTCT-AAA-AAATCTCAAGAAGAAAGT-AACGACTCACGGTAAAAGTGCCA-AGTCTCT
1 AAAATTGTCTAAAAGAAATCTCAAGAAGAAAGTGAACG-CTCACAGTAAAAGTG-CAGAGTCTCT
* * *
71472 ATATGTTTCCAGAATATCCAAATAAATAAATAGAGTGTAATTGCATTGCAACATATAGCAATATT
64 ATATGTTTCCAGAATATCCAAATAAATAAATAGAGAGTAATTGCATCGCAACATATAGCAATA-C
* * * *
71537 GAGACGGGGGGAGAAAT-AA-AAAAAGAGAAGTGAAGACAAAATTGAGGCGGACACATTTAAA-A
128 CA-A--GGAGGA-AAATAAATAAAAAGAGAAGTGAAAACAAAATTGAGGCGAACACATTTAAAGA
* *** * * *
71599 ATTCT-AGAAATAGATTGTATCCAATTTCTTAGAGGCAAACCATGATACATGTTTCC-CACCATA
189 ATT-TGA-AAATACAGAATATCCAATTACTTA-AAGCAAACCATGATACATG-CTCCTCACCATA
* * * * *
71662 TTTGTCTGTTGTTTCCATTGTACTTATCACTCTAATCTTTCATTGAAAATTTCGCTTAAATATCT
250 TTTGTCAGTTGTTTCCATTGTAATAAT-A-ACTAATCTTTCATTGAAAAGTTCGCTTAAATATCT
* * * *
71727 TCAAAAACATTAGTTTTTTTCTTTTATTTTTTAACATAATATACCACTTGTTTTGCCTTGCCAAC
313 TCAAAAACATTA--ATTTTTCTTTTATTTTTGAACATAATATACCACTTGATTTGCATTGCCAAC
*
71792 TTTCACCACAATTCAAGTTTCCTATA-CAAGTCGAGTGAA-AACACGGT-GAA-AATAAACATAA
376 TTTCACCACAATTCAAGATTCCTATACCAA--CGAGTGAATAA-ACGGTGGAAGAA-AAACATAA
** *
71853 AAAGGGTTTTGG-GATGT-TTATACAATCATGTCTATTT-CTATTAAAAGCTTCGCTCCCTGTTT
437 AAA-GAATTTGGAG-T-TCTTATACAATCATGTCTATTTCCT-TTAAAAGCTTCGCTCCCTGTTC
** * *
71915 TCAA-ACTCACTTTCGATATAAACTGTTTTCTTTTATCTTCTTTTGTTTCAAGTATTTTGTGTCA
498 T-AATACTCACTTTCGATATAAACTACTTTCTTTGATATTCTTTTGTTTCAAGTATTTTGTGTCA
* * * * *
71979 TGTCTGAAAATGCAGAATATCCGATTGGTTAGAGGCCAACCAAGATAACTGTTTCGTATCATATT
562 TGTCTGAAAATGCAGAAAATCCAATTGGTTAGAGGCCAACCAAGATAACTGCTTCCTACCATATT
* * * * * * *
72044 TGTCTATTGTTTCTATTGTAATTATGACTCTAATCTTTCAATGGAAAGTTCCCATAAATATCTCC
627 TGTCGATAGTTTCCACTGTAATTATGACTCTAATATTTCAATGGAAAGTTCCCATAAATATCACA
*
72109 AAAAACATGTGTTTCTCTTTTATTTTTAAACATTATTTATCACTTGTTTTGCATTGTCAAATTTC
692 AAAAACATGTATTTCTCTTTTATTTTTAAACATTATTTATCACTTGTTTTGCATTGTCAAATTTC
* * *
72174 ACCACAATTCAAGTTTCAGATACGCACCGAGTGAAAAAAGAGGGGAAACGAAACATAAAACAAGT
757 ACCACAAGTCAAGTTTCAAATACGCACCGAGTGAAAAAAGAGGGGAAACAAAACATAAAACAAGT
* * * *
72239 TTGGGGTGCTTACACAATTGTGTATATTTCTCTTAAAGGCTTCACTTCCTGTTTTCATCCTCACT
822 TTGGGATACTTACACAATCGTGTATATTTCCCTTAAAGGCTTCACTTCCTGTTTTCATCCTCACT
* *
72304 TTTGATATAAACCCCTTTCTTTGATCTTCTATTGTGTCAAGT
887 TTTGAAATAAACCCCTTGCTTTGATCTTCTATTGTGTCAAGT
72346 CTTTTGTGTA
Statistics
Matches: 801, Mismatches: 103, Indels: 58
0.83 0.11 0.06
Matches are distributed among these distances:
953 3 0.00
954 96 0.12
955 6 0.01
956 14 0.02
957 55 0.07
958 51 0.06
959 8 0.01
960 132 0.16
961 53 0.07
962 371 0.46
963 12 0.01
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (953 bp):
AAAATTGTCTAAAAGAAATCTCAAGAAGAAAGTGAACGCTCACAGTAAAAGTGCAGAGTCTCTAT
ATGTTTCCAGAATATCCAAATAAATAAATAGAGAGTAATTGCATCGCAACATATAGCAATACCAA
GGAGGAAAATAAATAAAAAGAGAAGTGAAAACAAAATTGAGGCGAACACATTTAAAGAATTTGAA
AATACAGAATATCCAATTACTTAAAGCAAACCATGATACATGCTCCTCACCATATTTGTCAGTTG
TTTCCATTGTAATAATAACTAATCTTTCATTGAAAAGTTCGCTTAAATATCTTCAAAAACATTAA
TTTTTCTTTTATTTTTGAACATAATATACCACTTGATTTGCATTGCCAACTTTCACCACAATTCA
AGATTCCTATACCAACGAGTGAATAAACGGTGGAAGAAAAACATAAAAAGAATTTGGAGTTCTTA
TACAATCATGTCTATTTCCTTTAAAAGCTTCGCTCCCTGTTCTAATACTCACTTTCGATATAAAC
TACTTTCTTTGATATTCTTTTGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAAAATCCAA
TTGGTTAGAGGCCAACCAAGATAACTGCTTCCTACCATATTTGTCGATAGTTTCCACTGTAATTA
TGACTCTAATATTTCAATGGAAAGTTCCCATAAATATCACAAAAAACATGTATTTCTCTTTTATT
TTTAAACATTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAAGTCAAGTTTCAAATACG
CACCGAGTGAAAAAAGAGGGGAAACAAAACATAAAACAAGTTTGGGATACTTACACAATCGTGTA
TATTTCCCTTAAAGGCTTCACTTCCTGTTTTCATCCTCACTTTTGAAATAAACCCCTTGCTTTGA
TCTTCTATTGTGTCAAGTTTAAGTTAAATGAATTTATTCATAA
Found at i:72325 original size:378 final size:380
Alignment explanation
Indices: 71627--72354 Score: 892
Period size: 378 Copynumber: 1.9 Consensus size: 380
71617 ATCCAATTTC
* * *
71627 TTAGAGGCAAACCATGATACATGTTTCCCACCATATTTGTCTGTTGTTTCCATTGTACTTATCAC
1 TTAGAGGCAAACCAAGATACATGTTTCCCACCATATTTGTCTATTGTTTCCATTGTAATTATCAC
* * * * * * *
71692 TCTAATCTTTCATTGAAAATTTCGCTTAAATATCTTCAAAAACATTAGTTTTTTTCTTTTATTTT
66 TCTAATCTTTCAATGAAAAGTTCCCATAAATATCTCCAAAAACATTAGTGTTTCTCTTTTATTTT
* * * **
71757 TTAACATAATATACCACTTGTTTTGCCTTGCCAACTTTCACCACAATTCAAGTTTCCTATACAAG
131 TAAACATAATATACCACTTGTTTTGCATTGCCAAATTTCACCACAATTCAAGTTTCAGATACAAG
* * * * * * * * *
71822 TCGAGTGAAAACACGGTGAAAATAAACATAAAAAGGGTTTTGGGATGTTTATACAATCATGTCTA
196 CCGAGTGAAAAAAAGGGGAAAAGAAACATAAAAAGAGTTTTGGGATGCTTACACAATCATGTATA
* *** *
71887 TTTCTATTAAAAGCTTCGCTCCCTGTTTTCAAACTCACTTTCGATATAAACTGTTTTCTTTTATC
261 TTTCTATTAAAAGCTTCACTCCCTGTTTTCAAACTCACTTTCGATATAAACCCCTTTCTTTGATC
* *
71952 TTCTTTTGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAATATCCGATTGG
326 TTCTATTGTGTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAATATCCGATTGG
* ** * * *
72007 TTAGAGGCCAACCAAGATA-ACTGTTTCGTATCATATTTGTCTATTGTTTCTATTGTAATTATGA
1 TTAGAGGCAAACCAAGATACA-TGTTTCCCACCATATTTGTCTATTGTTTCCATTGTAATTATCA
*
72071 CTCTAATCTTTCAATGGAAAGTTCCCATAAATATCTCCAAAAACA-T-GTGTTTCTCTTTTATTT
65 CTCTAATCTTTCAATGAAAAGTTCCCATAAATATCTCCAAAAACATTAGTGTTTCTCTTTTATTT
* * * * *
72134 TTAAACATTATTTATCACTTGTTTTGCATTGTCAAATTTCACCACAATTCAAGTTTCAGATACGC
130 TTAAACATAATATACCACTTGTTTTGCATTGCCAAATTTCACCACAATTCAAGTTTCAGATAC-A
* * **
72199 A-CCGAGTGAAAAAAGAGGGGAAACGAAACATAAAACA-AG-TTTGGGGTGCTTACACAATTGTG
194 AGCCGAGTGAAAAAA-AGGGGAAAAGAAACATAAAA-AGAGTTTTGGGATGCTTACACAATCATG
* * * ** *
72261 TATATTTCTCTTAAAGGCTTCACTTCCTGTTTTCATCCTCACTTTTGATATAAACCCCTTTCTTT
257 TATATTTCTATTAAAAGCTTCACTCCCTGTTTTCAAACTCACTTTCGATATAAACCCCTTTCTTT
*
72326 GATCTTCTATTGTGTCAAGTCTTTTGTGT
322 GATCTTCTATTGTGTCAAGTATTTTGTGT
72355 AAAGTTTAAG
Statistics
Matches: 290, Mismatches: 54, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
378 177 0.61
379 20 0.07
380 93 0.32
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (380 bp):
TTAGAGGCAAACCAAGATACATGTTTCCCACCATATTTGTCTATTGTTTCCATTGTAATTATCAC
TCTAATCTTTCAATGAAAAGTTCCCATAAATATCTCCAAAAACATTAGTGTTTCTCTTTTATTTT
TAAACATAATATACCACTTGTTTTGCATTGCCAAATTTCACCACAATTCAAGTTTCAGATACAAG
CCGAGTGAAAAAAAGGGGAAAAGAAACATAAAAAGAGTTTTGGGATGCTTACACAATCATGTATA
TTTCTATTAAAAGCTTCACTCCCTGTTTTCAAACTCACTTTCGATATAAACCCCTTTCTTTGATC
TTCTATTGTGTCAAGTATTTTGTGTCATGTCTGAAAATGCAGAATATCCGATTGG
Found at i:73785 original size:17 final size:18
Alignment explanation
Indices: 73765--73804 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
73755 TTAATTTATT
73765 TTTAAATTTA-GTTTAAA
1 TTTAAATTTATGTTTAAA
*
73782 TTTAAATTTATTTTTAAA
1 TTTAAATTTATGTTTAAA
73800 TTTAA
1 TTTAA
73805 TTAAAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
TTTAAATTTATGTTTAAA
Found at i:79426 original size:9 final size:8
Alignment explanation
Indices: 79412--79494 Score: 64
Period size: 8 Copynumber: 10.4 Consensus size: 8
79402 AAAAATAAAT
79412 AAAAAAGA
1 AAAAAAGA
79420 AAGAAAAGA
1 AA-AAAAGA
79429 AAGAAAA-A
1 AA-AAAAGA
*
79437 AAAAGGAGA
1 AAAA-AAGA
79446 AAAAAAGA
1 AAAAAAGA
79454 AAAAAAG-
1 AAAAAAGA
*
79461 GAAAAAG-
1 AAAAAAGA
*
79468 AAAATAGA
1 AAAAAAGA
* *
79476 AAAAATGG
1 AAAAAAGA
*
79484 GAAAAAGA
1 AAAAAAGA
79492 AAA
1 AAA
79495 GGAGAGGTCG
Statistics
Matches: 59, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
7 13 0.22
8 28 0.47
9 18 0.31
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.02
Consensus pattern (8 bp):
AAAAAAGA
Found at i:79426 original size:20 final size:20
Alignment explanation
Indices: 79398--79458 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
79388 TGGATTTAAT
* * *
79398 GAAAAAAAATAAATAAAAAA
1 GAAAGAAAAGAAAGAAAAAA
79418 GAAAGAAAAGAAAGAAAAAA
1 GAAAGAAAAGAAAGAAAAAA
*
79438 -AAAGGAGAAAAAAAGAAAAAA
1 GAAA-GA-AAAGAAAGAAAAAA
79459 AGGAAAAAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
19 3 0.09
20 19 0.54
21 13 0.37
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (20 bp):
GAAAGAAAAGAAAGAAAAAA
Found at i:79436 original size:21 final size:21
Alignment explanation
Indices: 79412--79460 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
79402 AAAAATAAAT
79412 AAAAAAGAA-AGAAAAGAAAGA
1 AAAAAAGAAGAGAAAA-AAAGA
79433 AAAAAA-AAGGAGAAAAAAAGA
1 AAAAAAGAA-GAGAAAAAAAGA
79454 AAAAAAG
1 AAAAAAG
79461 GAAAAAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 2 0.08
21 17 0.68
22 6 0.24
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (21 bp):
AAAAAAGAAGAGAAAAAAAGA
Found at i:79453 original size:30 final size:30
Alignment explanation
Indices: 79414--79480 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 30
79404 AAATAAATAA
79414 AAAAGAAAGAAAAGAAA-GAAAAA-AAAAGGAG
1 AAAA-AAAGAAAA-AAAGGAAAAAGAAAA-GAG
*
79445 AAAAAAAGAAAAAAAGGAAAAAGAAAATAG
1 AAAAAAAGAAAAAAAGGAAAAAGAAAAGAG
79475 AAAAAA
1 AAAAAA
79481 TGGGAAAAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
29 3 0.09
30 22 0.67
31 8 0.24
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.01
Consensus pattern (30 bp):
AAAAAAAGAAAAAAAGGAAAAAGAAAAGAG
Found at i:79469 original size:23 final size:23
Alignment explanation
Indices: 79413--79494 Score: 78
Period size: 22 Copynumber: 3.4 Consensus size: 23
79403 AAAATAAATA
*
79413 AAAAAGAAAGAAAAGAAAGAAAA-A
1 AAAAAGAAA-AAAAGAAA-AAAAGG
79437 AAAAGGAGAAAAAAAGAAAAAAAGG
1 AAAA--AGAAAAAAAGAAAAAAAGG
* *
79462 AAAAAG-AAAATAGAAAAAATGGG
1 AAAAAGAAAAAAAGAAAAAA-AGG
79485 AAAAAGAAAA
1 AAAAAGAAAA
79495 GGAGAGGTCG
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
22 12 0.24
23 10 0.20
24 11 0.22
25 12 0.24
26 5 0.10
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (23 bp):
AAAAAGAAAAAAAGAAAAAAAGG
Found at i:79488 original size:22 final size:23
Alignment explanation
Indices: 79412--79471 Score: 50
Period size: 25 Copynumber: 2.5 Consensus size: 23
79402 AAAAATAAAT
*
79412 AAAAAAGAAAGAAAA-GAAAGAAAA
1 AAAAAAGAAA-AAAAGGAAA-AAAG
*
79436 AAAAAGGAGAAAAAAAGAAAAAAAG
1 AAAAA--AGAAAAAAAGGAAAAAAG
*
79461 GAAAAAGAAAA
1 AAAAAAGAAAA
79472 TAGAAAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
23 6 0.20
24 5 0.17
25 11 0.37
26 8 0.27
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (23 bp):
AAAAAAGAAAAAAAGGAAAAAAG
Found at i:80941 original size:147 final size:145
Alignment explanation
Indices: 80434--80943 Score: 520
Period size: 147 Copynumber: 3.5 Consensus size: 145
80424 CTGAGAAAAA
* * * * * * *
80434 CATGAAGATTTGAAGGGAAAAGCTGAGACAGAAATGACAAACCTGGTACCTTAGAAGATGTGATG
1 CATGAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGACAAACC-GGTACCTAAGAA-ATGTGATG
** * *
80499 GGAAAGATTAAGGCTGTAACGACGAATCTGGTACCATGAAATGTGATGGGAAAGGTTGAGGCTGC
64 GGAAAGATTAAGGCTACAACGGCGAATCCGGTACCATGAAATGTGATGGGAAAGGTTGAGGCTGC
* * *
80564 AATGGCGAACCCGCTAC
129 AATGACAAACCCGATAC
* * * ** *
80581 CATGAAGATTTGAAGGGAAAGGTTGATGCCGCAACGGCGAACTTGTACCTCAA-AAATGTGATTG
1 CATGAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGACAAACCGGTACCT-AAGAAATGTGATGG
* *** * * * * * * *
80645 GAAAGGTTAAGGCCGTAACGGC-AAACCTGTACCATGAATATTTAAAGGGAAAAGTTGAGGCCGC
65 GAAAGATTAAGGCTACAACGGCGAATCCGGTACCATGAA-ATGTGATGGGAAAGGTTGAGGCTGC
* *
80709 AACGACAAACCCGGTAC
129 AATGACAAACCCGATAC
* * ** * * *
80726 CTAAGAAGATTTGAAGGGAAAGGTTGATGCCATAACGGCGAACCGAGTACCTCAGAAATGTGATG
1 C-ATGAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGACAAACCG-GTACCTAAGAAATGTGATG
*
80791 GGAAAGATTGAGGCTACAACGGCGAATCCGGTACCATGAAATGTGATGGGAAAGGTTGAGGCTGC
64 GGAAAGATTAAGGCTACAACGGCGAATCCGGTACCATGAAATGTGATGGGAAAGGTTGAGGCTGC
*
80856 AATGACAAACCTGATAC
129 AATGACAAACCCGATAC
** * *
80873 CATGAAGATTTGAAGGGAAAGGTTGAGGTTGCAACGACAAACTCGGTACCTAAGAAGATTTGAAG
1 CATGAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGACAAAC-CGGTACCTAAGAA-ATGTGATG
80938 GGAAAG
64 GGAAAG
80944 GTTGATGCAA
Statistics
Matches: 294, Mismatches: 61, Indels: 16
0.79 0.16 0.04
Matches are distributed among these distances:
144 13 0.04
145 61 0.21
146 90 0.31
147 116 0.39
148 14 0.05
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (145 bp):
CATGAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGACAAACCGGTACCTAAGAAATGTGATGGG
AAAGATTAAGGCTACAACGGCGAATCCGGTACCATGAAATGTGATGGGAAAGGTTGAGGCTGCAA
TGACAAACCCGATAC
Found at i:81075 original size:197 final size:194
Alignment explanation
Indices: 80634--81178 Score: 650
Period size: 197 Copynumber: 2.8 Consensus size: 194
80624 TGTACCTCAA
** * * * * * * *
80634 AAATGTGATTGGAAAGGTTAAGGCCGTAACGGCAAACCTG-TACCATGAATATTTAAAGGGAAAA
1 AAATGTGATAAGAAAGGTTGAGGCTGCAATGACAAACCTGATACCATGAAGATTTAAAGGGAAAG
*
80698 GTTGAGGCCGCAACGACAAACCCGGTACCTAAGAAGATTTGAAGGGAAAGGTTGATGCCA-TAAC
66 GTTGAGGTCGCAACGACAAA-CCGGTACCTAAGAAGATTTGAAGGGAAAGGTTGATGCCACT-AC
* * * * * *
80762 GGCGAA-CCGAGTACCTCAGAAATGTGATGGGAAAGATTGAGGCTACAACGGCGAATCCGGTACC
129 GGTGAACCCG-GTACCTTAAAAATGTGATAGGAAAGATTAAGGCTA-AACGACGAATCCGGTACC
80826 ATG
192 ATG
** *
80829 AAATGTGATGGGAAAGGTTGAGGCTGCAATGACAAACCTGATACCATGAAGATTTGAAGGGAAAG
1 AAATGTGATAAGAAAGGTTGAGGCTGCAATGACAAACCTGATACCATGAAGATTTAAAGGGAAAG
* *
80894 GTTGAGGTTGCAACGACAAACTCGGTACCTAAGAAGATTTGAAGGGAAAGGTTGATGCAACTACG
66 GTTGAGGTCGCAACGACAAAC-CGGTACCTAAGAAGATTTGAAGGGAAAGGTTGATGCCACTACG
*
80959 GTGAACCCGGTACCTTAAAAGATGTGATAGGAAAGATTAAGGTCGT-AACGATGAATCCGGTACC
130 GTGAACCCGGTACCTTAAAA-ATGTGATAGGAAAGATTAAGG-C-TAAACGACGAATCCGGTACC
81023 ATG
192 ATG
* * *
81026 AAATGTGATAAGAAAGGTTGAGAGC-GCAATGACGAACCTGATGCCATGAAGATTTTAAGGGAAA
1 AAATGTGATAAGAAAGGTTGAG-GCTGCAATGACAAACCTGATACCATGAAGATTTAAAGGG-AA
* * * * * *
81090 AGGTTGAGGTCGCAATGGCGAACCTGGTACCTAAGAAGATATGAAGGGAAAGGTTGAGGCCACAA
64 AGGTTGAGGTCGCAACGACAAACC-GGTACCTAAGAAGATTTGAAGGGAAAGGTTGATGCCACTA
* *
81155 CGGTGAACCTGATACCTTAGAAAA
128 CGGTGAACCCGGTACCTTA-AAAA
81179 CAAGATGAAA
Statistics
Matches: 305, Mismatches: 34, Indels: 19
0.85 0.09 0.05
Matches are distributed among these distances:
195 35 0.11
196 92 0.30
197 96 0.31
198 78 0.26
199 4 0.01
ACGTcount: A:0.36, C:0.16, G:0.29, T:0.20
Consensus pattern (194 bp):
AAATGTGATAAGAAAGGTTGAGGCTGCAATGACAAACCTGATACCATGAAGATTTAAAGGGAAAG
GTTGAGGTCGCAACGACAAACCGGTACCTAAGAAGATTTGAAGGGAAAGGTTGATGCCACTACGG
TGAACCCGGTACCTTAAAAATGTGATAGGAAAGATTAAGGCTAAACGACGAATCCGGTACCATG
Found at i:81164 original size:50 final size:50
Alignment explanation
Indices: 80473--81176 Score: 419
Period size: 48 Copynumber: 14.3 Consensus size: 50
80463 AGAAATGACA
* * * * * * *
80473 AACCTGGTACCTTAGAAGATGTGATGGGAAAGATTAAGGCTGTAACGACG
1 AACCTGGTACCTAAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCG
* * * * *
80523 AATCTGGTACC-ATGAA-ATGTGATGGGAAAGGTTGAGGCTGCAATGGCG
1 AACCTGGTACCTAAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCG
* * * * *
80571 AACCCGCTACC-ATGAAGATTTGAAGGGAAAGGTTGATGCCGCAACGGCG
1 AACCTGGTACCTAAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCG
* ** * * *
80620 AA-CTTGTACCTCAA-AA-ATGTGATTGGAAAGGTTAAGGCCGTAACGGCA
1 AACCTGGTACCT-AAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCG
* * * * * * *
80668 AACCT-GTACC-ATGAATATTTAAAGGGAAAAGTTGAGGCCGCAACGACA
1 AACCTGGTACCTAAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCG
* * * **
80716 AACCCGGTACCTAAGAAGATTTGAAGGGAAAGGTTGATGCCATAACGGCG
1 AACCTGGTACCTAAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCG
* * * **
80766 AACC-GAGTACCTCAGAA-ATGTGATGGGAAAGATTGAGGCTACAACGGCG
1 AACCTG-GTACCTAAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCG
* * * * * *
80815 AATCC-GGTACC-ATGAA-ATGTGATGGGAAAGGTTGAGGCTGCAATGACA
1 AA-CCTGGTACCTAAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCG
* * * ** *
80863 AACCTGATACC-ATGAAGATTTGAAGGGAAAGGTTGAGGTTGCAACGAC-
1 AACCTGGTACCTAAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCG
* * * ** * *
80911 AAACTCGGTACCTAAGAAGATTTGAAGGGAAAGGTTGATGCAACTACGGTG
1 AACCT-GGTACCTAAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCG
* * * * * **
80962 AACCCGGTACCTTAA-AAGATGTGATA-GGAAAGATTAAGGTCGTAACGATG
1 AACCTGGTACC-TAAGAAGATGTGA-AGGGAAAGGTTGAGGCCGCAACGGCG
* * * *
81012 AATCC-GGTACC-ATGAA-ATGTGATA-AGAAAGGTTGAGAG-CGCAATGACG
1 AA-CCTGGTACCTAAGAAGATGTGA-AGGGAAAGGTTGAG-GCCGCAACGGCG
* * * * * * *
81060 AACCTGATGCC-ATGAAGATTTTAAGGGAAAAGGTTGAGGTCGCAATGGCG
1 AACCTGGTACCTAAGAAGATGTGAAGGG-AAAGGTTGAGGCCGCAACGGCG
* * *
81110 AACCTGGTACCTAAGAAGATATGAAGGGAAAGGTTGAGGCCACAACGGTG
1 AACCTGGTACCTAAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCG
* *
81160 AACCTGATACCTTAGAA
1 AACCTGGTACCTAAGAA
81177 AACAAGATGA
Statistics
Matches: 517, Mismatches: 111, Indels: 52
0.76 0.16 0.08
Matches are distributed among these distances:
46 1 0.00
47 6 0.01
48 188 0.36
49 116 0.22
50 184 0.36
51 22 0.04
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (50 bp):
AACCTGGTACCTAAGAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGCG
Found at i:81462 original size:39 final size:39
Alignment explanation
Indices: 81400--81957 Score: 321
Period size: 39 Copynumber: 14.4 Consensus size: 39
81390 GAAGATTTCG
* * *
81400 ATCTCTTACCCTGAGCCTAGGGCAGATCATCATCAGTAA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAA
* * * *
81439 ATCTCTTTCCTCGAGCTTGGGGCAGATCATCATAAGCAA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAA
* * *
81478 ATCTCTTACCCCGAGCTTGGGGCAGATCATCGTAAGCAA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAA
* * * *
81517 ATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCCG---
1 ATCTCTTACCCCGAGCTTGGGGCAGA-T-C-ATCATCAGTAA
* * * **
81556 ATCTCTTACACGGAGCCTATGGCAGATCATCATCAGTAA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAA
* *
81595 ATCTCTTACCCTGAGCCTGGGGCAGATTGCAGTCATC--T-A
1 ATCTCTTACCCCGAGCTTGGGGCAGA-T-CA-TCATCAGTAA
* * *
81634 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAAT-AT-ACT-G
1 ATCTCTTACCCCGAGCTTGGGGCAGA-T-C-ATCATCAGTAA
* ** * * **
81673 ATCTCTTACCCCGTGCTTGGGGCAGATTGTAACCA-TCCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGT-AA
* **
81712 ATCTCTTA--CAGAGCTTGGGGCAGATCATCATCAACAA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAA
* * *
81749 ATCTCTTACCCTGAGCTTGGGGCAGATTGCAACCATC--T-G
1 ATCTCTTACCCCGAGCTTGGGGCAGA-T-C-ATCATCAGTAA
* * * *
81788 ATCTTTTACCCCGAGCCTGTGGCAGATCATCATCAGCAA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAA
* * *
81827 ATCTCTTACCCCGAGCTTGGGGTAGATTGCAGCGATCCG---
1 ATCTCTTACCCCGAGCTTGGGGCAGA-T-CATC-ATCAGTAA
* * * *
81866 ATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCCG---
1 ATCTCTTACCCCGAGCTTGGGGCAGA-T-C-ATCATCAGTAA
* * * **
81905 ATCTCTTACCCCGAGCCTAGGGCAGATCACCATCAGCCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAA
81944 ATCTCTTACCCCGA
1 ATCTCTTACCCCGA
81958 TCATAGGGCA
Statistics
Matches: 424, Mismatches: 63, Indels: 64
0.77 0.11 0.12
Matches are distributed among these distances:
36 19 0.04
37 32 0.08
38 7 0.02
39 333 0.79
40 8 0.02
41 7 0.02
42 18 0.04
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
ATCTCTTACCCCGAGCTTGGGGCAGATCATCATCAGTAA
Found at i:81532 original size:78 final size:75
Alignment explanation
Indices: 81398--81892 Score: 408
Period size: 78 Copynumber: 6.4 Consensus size: 75
81388 TTGAAGATTT
* * * * * *
81398 CGATCTCTTACCCTGAGCCTAGGGCAGATCATCATCAGTAAATCTCTTTCCTCGAGCTTGGGGCA
1 CGATCTCTTACCCCGAGCCTGGGGCAGATCATCATAAGCAAATCTCTTACCCCGAGCTTGGGGCA
*
81463 GATCATCATAAGC
66 GAT--TCA-AATC
** * * * *
81476 AAATCTCTTACCCCGAGCTTGGGGCAGATCATCGTAAGCAAATCTCTTACCCCGAGCCTAGGGCA
1 CGATCTCTTACCCCGAGCCTGGGGCAGATCATCATAAGCAAATCTCTTACCCCGAGCTTGGGGCA
81541 GATTGCAACCATC
66 GATT-CAA--ATC
* * ** * * * *
81554 CGATCTCTTACACGGAGCCTATGGCAGATCATCATCAGTAAATCTCTTACCCTGAGCCTGGGGCA
1 CGATCTCTTACCCCGAGCCTGGGGCAGATCATCATAAGCAAATCTCTTACCCCGAGCTTGGGGCA
*
81619 GATTGCAGTCATC
66 GATT-CA--AATC
** ** *
81632 TAATCTCTTACCCCGAGCCTGGGGCAGAT--TGCAATATA-CTGATCTCTTACCCCGTGCTTGGG
1 CGATCTCTTACCCCGAGCCTGGGGCAGATCAT-C-ATA-AGCAAATCTCTTACCCCGAGCTTGGG
*
81694 GCAGATTGTAACCATC
63 GCAGATT-CAA--ATC
* * *
81710 CGATCTCTTA--CAGAGCTTGGGGCAGATCATCATCAA-CAAATCTCTTACCCTGAGCTTGGGGC
1 CGATCTCTTACCCCGAGCCTGGGGCAGATCATCAT-AAGCAAATCTCTTACCCCGAGCTTGGGGC
81772 AGATTGCAACCATC
65 AGATT-CAA--ATC
* * * * *
81786 TGATCTTTTACCCCGAGCCTGTGGCAGATCATCATCAGCAAATCTCTTACCCCGAGCTTGGGGTA
1 CGATCTCTTACCCCGAGCCTGGGGCAGATCATCATAAGCAAATCTCTTACCCCGAGCTTGGGGCA
*
81851 GATTGCAGCGATC
66 GATT-CA--AATC
*
81864 CGATCTCTTACCCCGAGCCTAGGGCAGAT
1 CGATCTCTTACCCCGAGCCTGGGGCAGAT
81893 TGCAACCATC
Statistics
Matches: 336, Mismatches: 63, Indels: 36
0.77 0.14 0.08
Matches are distributed among these distances:
76 64 0.19
77 6 0.02
78 265 0.79
79 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (75 bp):
CGATCTCTTACCCCGAGCCTGGGGCAGATCATCATAAGCAAATCTCTTACCCCGAGCTTGGGGCA
GATTCAAATC
Found at i:81805 original size:154 final size:155
Alignment explanation
Indices: 81398--81892 Score: 565
Period size: 156 Copynumber: 3.2 Consensus size: 155
81388 TTGAAGATTT
* ** * *
81398 CGATCTCTTACCCTGAGCCTAGGGCAGATCATCATCAGTAAATCTCTT-TCCTCGAGCTTGGGGC
1 CGATCTCTTACAC-GAGCCTAGGGCAGATCATCATCAACAAATCTCTTACCCT-GAGCCTGGGGC
* * * * *
81462 AGATCAT-CATA--AGCAAATCTCTTACCCCGAGCTTGGGGCAGATCATCGTAAGCAAATCTCTT
64 AGAT--TGCA-ACCATCTAATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAAATCTCTT
* *
81524 ACCCCGAGCCTAGGGCAGATTGCAACCATC
126 ACCCCGAGCTTGGGGCAGATTGCAACCATC
* **
81554 CGATCTCTTACACGGAGCCTATGGCAGATCATCATCAGTAAATCTCTTACCCTGAGCCTGGGGCA
1 CGATCTCTTACAC-GAGCCTAGGGCAGATCATCATCAACAAATCTCTTACCCTGAGCCTGGGGCA
** **
81619 GATTGCAGTCATCTAATCTCTTACCCCGAGCCTGGGGCAGATTGCAAT-AT-A-CTGATCTCTTA
65 GATTGCAACCATCTAATCTCTTACCCCGAGCCTGGGGCAGA-T-C-ATCATCAGCAAATCTCTTA
* *
81681 CCCCGTGCTTGGGGCAGATTGTAACCATC
127 CCCCGAGCTTGGGGCAGATTGCAACCATC
* * *
81710 CGATCTCTTACA-GAGCTTGGGGCAGATCATCATCAACAAATCTCTTACCCTGAGCTTGGGGCAG
1 CGATCTCTTACACGAGCCTAGGGCAGATCATCATCAACAAATCTCTTACCCTGAGCCTGGGGCAG
* * *
81774 ATTGCAACCATCTGATCTTTTACCCCGAGCCTGTGGCAGATCATCATCAGCAAATCTCTTACCCC
66 ATTGCAACCATCTAATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAAATCTCTTACCCC
* * *
81839 GAGCTTGGGGTAGATTGCAGCGATC
131 GAGCTTGGGGCAGATTGCAACCATC
*
81864 CGATCTCTTACCCCGAGCCTAGGGCAGAT
1 CGATCTCTTA-CACGAGCCTAGGGCAGAT
81893 TGCAACCATC
Statistics
Matches: 290, Mismatches: 37, Indels: 24
0.83 0.11 0.07
Matches are distributed among these distances:
151 2 0.01
152 3 0.01
153 2 0.01
154 125 0.43
155 3 0.01
156 146 0.50
157 5 0.02
158 2 0.01
159 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (155 bp):
CGATCTCTTACACGAGCCTAGGGCAGATCATCATCAACAAATCTCTTACCCTGAGCCTGGGGCAG
ATTGCAACCATCTAATCTCTTACCCCGAGCCTGGGGCAGATCATCATCAGCAAATCTCTTACCCC
GAGCTTGGGGCAGATTGCAACCATC
Found at i:81813 original size:232 final size:232
Alignment explanation
Indices: 81490--81931 Score: 647
Period size: 232 Copynumber: 1.9 Consensus size: 232
81480 CTCTTACCCC
*
81490 GAGCTTGGGGCAGATCATCGTAAGCAAATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCC
1 GAGCTTGGGGCAGATCATCATAAGCAAATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCC
* * *
81555 GATCTCTTACACGGAGCCTATGGCAGATCATCATCAGTAAATCTCTTACCCTGAGCCTGGGGCAG
66 GATCTCTTACACCGAGCCTATGGCAGATCATCATCAGCAAATCTCTTACCCCGAGCCTGGGGCAG
* * * *
81620 ATTGCAGTC-ATCTAATCTCTTACCCCGAGCCTGGGGCAGATTGCAA-TATACTGATCTCTTACC
131 ATTGCAG-CGATCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCAT-CCGATCTCTTACC
* * *
81683 CCGTGCTTGGGGCAGATTGTAACCATCCGATCTCTTACA
194 CCGAGCCTAGGGCAGATTGTAACCATCCGATCTCTTACA
* * *
81722 GAGCTTGGGGCAGATCATCATCAA-CAAATCTCTTACCCTGAGCTTGGGGCAGATTGCAACCATC
1 GAGCTTGGGGCAGATCATCAT-AAGCAAATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATC
* * * * * *
81786 TGATCTTTTACCCCGAGCCTGTGGCAGATCATCATCAGCAAATCTCTTACCCCGAGCTTGGGGTA
65 CGATCTCTTACACCGAGCCTATGGCAGATCATCATCAGCAAATCTCTTACCCCGAGCCTGGGGCA
*
81851 GATTGCAGCGATCCGATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCCGATCTCTTACCC
130 GATTGCAGCGATCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCCGATCTCTTACCC
81916 CGAGCCTAGGGCAGAT
195 CGAGCCTAGGGCAGAT
81932 CACCATCAGC
Statistics
Matches: 186, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
231 1 0.01
232 181 0.97
233 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (232 bp):
GAGCTTGGGGCAGATCATCATAAGCAAATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCC
GATCTCTTACACCGAGCCTATGGCAGATCATCATCAGCAAATCTCTTACCCCGAGCCTGGGGCAG
ATTGCAGCGATCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCCGATCTCTTACCCC
GAGCCTAGGGCAGATTGTAACCATCCGATCTCTTACA
Found at i:81909 original size:78 final size:75
Alignment explanation
Indices: 81398--81970 Score: 404
Period size: 78 Copynumber: 7.4 Consensus size: 75
81388 TTGAAGATTT
* * * * *
81398 CGATCTCTTACCCTGAGCCTAGGGCAGATCATCATCAGTAAATCTCTTTCCTCGAGCTTGGGGCA
1 CGATCTCTTACCCCGAGCCTAGGGCAGATCATCATCCG---ATCTCTTACCCCGAGCCTGGGGCA
*
81463 GATCAT-CATA--AGC
63 GAT--TGCA-ACCATC
** * * * ** *
81476 AAATCTCTTACCCCGAGCTTGGGGCAGATCATCGTAAGCAAATCTCTTACCCCGAGCCTAGGGCA
1 CGATCTCTTACCCCGAGCCTAGGGCAGATCATC---ATCCGATCTCTTACCCCGAGCCTGGGGCA
81541 GATTGCAACCATC
63 GATTGCAACCATC
* * * * *
81554 CGATCTCTTACACGGAGCCTATGGCAGATCATCATCAGTAAATCTCTTACCCTGAGCCTGGGGCA
1 CGATCTCTTACCCCGAGCCTAGGGCAGATCATCATCCG---ATCTCTTACCCCGAGCCTGGGGCA
**
81619 GATTGCAGTCATC
63 GATTGCAACCATC
** * * * *
81632 TAATCTCTTACCCCGAGCCTGGGGCAGATTGCAAT-ATACTGATCTCTTACCCCGTGCTTGGGGC
1 CGATCTCTTACCCCGAGCCTAGGGCAGA-T-C-ATCAT-CCGATCTCTTACCCCGAGCCTGGGGC
*
81696 AGATTGTAACCATC
62 AGATTGCAACCATC
* * * * * *
81710 CGATCTCTTA--CAGAGCTTGGGGCAGATCATCATCAACAAATCTCTTACCCTGAGCTTGGGGCA
1 CGATCTCTTACCCCGAGCCTAGGGCAGATCATCATC--C-GATCTCTTACCCCGAGCCTGGGGCA
81773 GATTGCAACCATC
63 GATTGCAACCATC
* * * * *
81786 TGATCTTTTACCCCGAGCCT-GTGGCAGATCATCATCAGCAAATCTCTTACCCCGAGCTTGGGGT
1 CGATCTCTTACCCCGAGCCTAG-GGCAGATCATCATC--C-GATCTCTTACCCCGAGCCTGGGGC
* *
81850 AGATTGCAGCGATC
62 AGATTGCAACCATC
* *
81864 CGATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTAGGGCA
1 CGATCTCTTACCCCGAGCCTAGGGCAGA-T-C-ATCATCCGATCTCTTACCCCGAGCCTGGGGCA
** * * *
81929 GATCACCATCAGC
63 GATTGCAACCATC
* * *
81942 CAATCTCTTACCCCGATCATAGGGCAGAT
1 CGATCTCTTACCCCGAGCCTAGGGCAGAT
81971 TGCAGTCATC
Statistics
Matches: 398, Mismatches: 73, Indels: 49
0.77 0.14 0.09
Matches are distributed among these distances:
73 3 0.01
74 3 0.01
75 4 0.01
76 58 0.15
77 4 0.01
78 306 0.77
79 4 0.01
80 4 0.01
81 12 0.03
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (75 bp):
CGATCTCTTACCCCGAGCCTAGGGCAGATCATCATCCGATCTCTTACCCCGAGCCTGGGGCAGAT
TGCAACCATC
Found at i:81971 original size:117 final size:116
Alignment explanation
Indices: 81400--81983 Score: 562
Period size: 117 Copynumber: 5.0 Consensus size: 116
81390 GAAGATTTCG
* * * * * * *
81400 ATCTCTTACCCTGAGCCTAGGGCAGA-T-C-ATCATCAGTAAATCTCTTTCCTCGAGCTTGGGGC
1 ATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCCG---ATCTCTTACCCCGAGCCTAGGGC
* *
81462 AGATCATCATAAGCAAATCTCTTACCCCGAGCTTGGGGCAGATCATCGTAAGCA---A
63 AGATCATCATCAGCAAATCTCTTACCCCGAGCTTGGGGCAGAT--T-G-CAGCATCCA
* * *
81517 ATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCCGATCTCTTACACGGAGCCTATGGCAGA
1 ATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTAGGGCAGA
* * * *
81582 TCATCATCAGTAAATCTCTTACCCTGAGCCTGGGGCAGATTGCAGTCATCTA
66 TCATCATCAGCAAATCTCTTACCCCGAGCTTGGGGCAGATTGCAG-CATCCA
* * * * * *
81634 ATCTCTTACCCCGAGCCTGGGGCAGATTGCAA-TATACTGATCTCTTACCCCGTGCTTGGGGCAG
1 ATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCAT-CCGATCTCTTACCCCGAGCCTAGGGCAG
** * * * ** * *
81698 ATTGTAACCATCCGATCTCTTA--CAGAGCTTGGGGCAGA-T-CATCATCAACAA
65 ATCATCATCAGCAAATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCATC--C-A
* * * * *
81749 ATCTCTTACCCTGAGCTTGGGGCAGATTGCAACCATCTGATCTTTTACCCCGAGCCT-GTGGCAG
1 ATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTAG-GGCAG
* *
81813 ATCATCATCAGCAAATCTCTTACCCCGAGCTTGGGGTAGATTGCAGCGATCCG
65 ATCATCATCAGCAAATCTCTTACCCCGAGCTTGGGGCAGATTGCAGC-ATCCA
81866 ATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTAGGGCAGA
1 ATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTAGGGCAGA
* * * * *
81931 TCACCATCAGCCAATCTCTTACCCCGATCATAGGGCAGATTGCAGTCATCCA
66 TCATCATCAGCAAATCTCTTACCCCGAGCTTGGGGCAGATTGCAG-CATCCA
81983 A
1 A
81984 AAAACAATGA
Statistics
Matches: 382, Mismatches: 65, Indels: 40
0.78 0.13 0.08
Matches are distributed among these distances:
112 4 0.01
113 4 0.01
114 5 0.01
115 84 0.22
116 4 0.01
117 263 0.69
118 5 0.01
119 4 0.01
120 9 0.02
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (116 bp):
ATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCCGATCTCTTACCCCGAGCCTAGGGCAGA
TCATCATCAGCAAATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCATCCA
Found at i:82999 original size:12 final size:12
Alignment explanation
Indices: 82969--83008 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
82959 ATTTTGGATT
82969 TTTAAATTTTAA
1 TTTAAATTTTAA
82981 TTT--A-TTTAA
1 TTTAAATTTTAA
82990 GTTTAAATTTTAA
1 -TTTAAATTTTAA
83003 TTTAAA
1 TTTAAA
83009 CTTATTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
9 5 0.21
10 4 0.17
12 10 0.42
13 5 0.21
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (12 bp):
TTTAAATTTTAA
Found at i:83013 original size:28 final size:29
Alignment explanation
Indices: 82968--83036 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 29
82958 AATTTTGGAT
* *
82968 TTTTAAATTTTAATTTA-TTTAAGTTTAAA
1 TTTT-AATTTAAACTTATTTTAAGTTTAAA
*
82997 TTTTAATTTAAACTTATTTTGAGTTTAAA
1 TTTTAATTTAAACTTATTTTAAGTTTAAA
*
83026 -TTTATTTTAAA
1 TTTTAATTTAAA
83037 TTAAAATTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 20 0.57
29 15 0.43
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.58
Consensus pattern (29 bp):
TTTTAATTTAAACTTATTTTAAGTTTAAA
Found at i:83043 original size:17 final size:16
Alignment explanation
Indices: 82969--83046 Score: 59
Period size: 17 Copynumber: 4.6 Consensus size: 16
82959 ATTTTGGATT
*
82969 TTTAAATTTTAATTT-A
1 TTTAAA-TTTATTTTAA
*
82985 TTTAAGTTTAAATTTTAA
1 TTTAAATTT--ATTTTAA
* *
83003 TTTAAACTTATTTTGAG
1 TTTAAATTTATTTT-AA
83020 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTT-AA
*
83037 TTAAAATTTA
1 TTTAAATTTA
83047 ATTAAAAGTC
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
15 3 0.06
16 10 0.20
17 28 0.57
18 8 0.16
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.56
Consensus pattern (16 bp):
TTTAAATTTATTTTAA
Found at i:84856 original size:30 final size:30
Alignment explanation
Indices: 84817--84927 Score: 134
Period size: 30 Copynumber: 3.7 Consensus size: 30
84807 CAAATTTTGA
* *
84817 CCCTCAAACTTTTTGAAAATTATATTTTAAC
1 CCCT-AAACTTTATAAAAATTATATTTTAAC
84848 CCCTAAACTTTATAAAAATTATATTTTAACC
1 CCCTAAACTTTATAAAAATTATATTTTAA-C
** *
84879 CCCT-AACTTTCCAAAAATTACATTTTAAC
1 CCCTAAACTTTATAAAAATTATATTTTAAC
**
84908 CCCTAAACTTTCCAAAAATT
1 CCCTAAACTTTATAAAAATT
84928 CCATTTCCCC
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
29 5 0.07
30 59 0.81
31 9 0.12
ACGTcount: A:0.39, C:0.23, G:0.01, T:0.37
Consensus pattern (30 bp):
CCCTAAACTTTATAAAAATTATATTTTAAC
Found at i:84896 original size:60 final size:60
Alignment explanation
Indices: 84832--85070 Score: 208
Period size: 60 Copynumber: 4.1 Consensus size: 60
84822 AAACTTTTTG
* ** *
84832 AAAATTATATTTTAACCCCT-AAACTTTATAAAAATTATATTTTAACCCCCTAACTTTCCA
1 AAAATTACATTTTAACCCCTCAAACTTTCCAAAAATTATATTTTAACCCCCGAAC-TTCCA
** * *
84892 AAAATTACATTTTAACCCCT-AAACTTTCCAAAAATTCCA-TTT-CCCCCCAAACTT-CA
1 AAAATTACATTTTAACCCCTCAAACTTTCCAAAAATTATATTTTAACCCCCGAACTTCCA
** * * * *
84948 AAAATTCACATTTT-TTCCTTCGAACTTCCCAAAAATTATATTTTAACCCTCGAACTTTCCA
1 AAAATT-ACATTTTAACCCCTCAAACTTTCCAAAAATTATATTTTAACCCCCGAAC-TTCCA
* * * * *
85009 AAAATATA-ATTTTTA-CCCTCGAAC-TTCTAAAAATTATATTTTTACCCTCGAACTTCCA
1 AAAAT-TACATTTTAACCCCTCAAACTTTCCAAAAATTATATTTTAACCCCCGAACTTCCA
85067 AAAA
1 AAAA
85071 ATCCGTTTCT
Statistics
Matches: 149, Mismatches: 22, Indels: 18
0.79 0.12 0.10
Matches are distributed among these distances:
56 11 0.07
57 24 0.16
58 20 0.13
59 36 0.24
60 49 0.33
61 8 0.05
62 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.02, T:0.36
Consensus pattern (60 bp):
AAAATTACATTTTAACCCCTCAAACTTTCCAAAAATTATATTTTAACCCCCGAACTTCCA
Found at i:84911 original size:29 final size:29
Alignment explanation
Indices: 84832--85070 Score: 184
Period size: 30 Copynumber: 8.1 Consensus size: 29
84822 AAACTTTTTG
* **
84832 AAAATTATATTTTAACCCCTAAACTTTATA
1 AAAATTATATTTTAACCCC-GAACTTTCCA
*
84862 AAAATTATATTTTAACCCCCTAACTTTCCA
1 AAAATTATATTTTAA-CCCCGAACTTTCCA
* *
84892 AAAATTACATTTTAACCCCTAAACTTTCCA
1 AAAATTATATTTTAACCCC-GAACTTTCCA
** ** *
84922 AAAATTCCA-TTTCCCCCCAAAC-TT-CA
1 AAAATTATATTTTAACCCCGAACTTTCCA
* ** * *
84948 AAAATTCACATTTTTTCCTTCGAACTTCCCA
1 AAAATT-ATATTTTAACC-CCGAACTTTCCA
84979 AAAATTATATTTTAACCCTCGAACTTTCCA
1 AAAATTATATTTTAACCC-CGAACTTTCCA
* *
85009 AAAA-TATAATTTTTACCCTCGAAC-TTCTA
1 AAAATTAT-ATTTTAACCC-CGAACTTTCCA
*
85038 AAAATTATATTTTTACCCTCGAAC-TTCCA
1 AAAATTATATTTTAACCC-CGAACTTTCCA
85067 AAAA
1 AAAA
85071 ATCCGTTTCT
Statistics
Matches: 177, Mismatches: 22, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
26 8 0.05
27 4 0.02
28 9 0.05
29 50 0.28
30 94 0.53
31 12 0.07
ACGTcount: A:0.38, C:0.25, G:0.02, T:0.36
Consensus pattern (29 bp):
AAAATTATATTTTAACCCCGAACTTTCCA
Found at i:84933 original size:30 final size:30
Alignment explanation
Indices: 84832--85178 Score: 163
Period size: 30 Copynumber: 11.8 Consensus size: 30
84822 AAACTTTTTG
* **
84832 AAAATTATATTTTAACCCCTAAACTTTATA
1 AAAATTACATTTTAACCCCTAAACTTTCCA
*
84862 AAAATTATATTTTAACCCCCT-AACTTTCCA
1 AAAATTACATTTTAA-CCCCTAAACTTTCCA
84892 AAAATTACATTTTAACCCCTAAACTTTCCA
1 AAAATTACATTTTAACCCCTAAACTTTCCA
* * *
84922 AAAATTCCA-TTT-CCCCCCAAAC-TT-CA
1 AAAATTACATTTTAACCCCTAAACTTTCCA
** * * *
84948 AAAATTCACATTTT-TTCCTTCGAACTTCCCA
1 AAAATT-ACATTTTAACCCCT-AAACTTTCCA
* *
84979 AAAATTATATTTTAA-CCCTCGAACTTTCCA
1 AAAATTACATTTTAACCCCT-AAACTTTCCA
* * *
85009 AAAATATA-ATTTTTA-CCCTCGAAC-TTCTA
1 AAAAT-TACATTTTAACCCCT-AAACTTTCCA
* * *
85038 AAAATTATATTTTTA-CCCTCGAAC-TTCCA
1 AAAATTACATTTTAACCCCT-AAACTTTCCA
* * * * *
85067 AAAAATCCGTTTCT-GCCCTTAAAC-TTCCA
1 AAAATTACATTT-TAACCCCTAAACTTTCCA
* * * * * *
85096 AAAATCACGTTTTTA-CCTTGAATCTTT-CT
1 AAAATTACATTTTAACCCCT-AAACTTTCCA
* *
85125 AAAATGACATTTTTACCCCTAAAACTTTCC-
1 AAAATTACATTTTAACCCCT-AAACTTTCCA
* *
85155 AATATTGCATTTTAACCCC-AAACT
1 AAAATTACATTTTAACCCCTAAACT
85179 CTCTGAAACT
Statistics
Matches: 258, Mismatches: 42, Indels: 36
0.77 0.12 0.11
Matches are distributed among these distances:
26 8 0.03
27 4 0.02
28 25 0.10
29 82 0.32
30 123 0.48
31 16 0.06
ACGTcount: A:0.35, C:0.26, G:0.03, T:0.36
Consensus pattern (30 bp):
AAAATTACATTTTAACCCCTAAACTTTCCA
Found at i:85072 original size:59 final size:60
Alignment explanation
Indices: 84861--85070 Score: 195
Period size: 59 Copynumber: 3.6 Consensus size: 60
84851 TAAACTTTAT
* * * * *
84861 AAAAATTATATTTTAACCCCCTAACTTTCCAAAAAT-TACATTTTAACCC-CTAAACTTTCC
1 AAAAATTATATTTTAACCCTCGAACTTTCCAAAAATATA-ATTTTTACCCTC-GAACTTCCC
** * * * * *
84921 AAAAATTCCA-TTT-CCCCCCAAAC-TT-CAAAAAT-TCACATTTTTTCCTTCGAACTTCCC
1 AAAAATTATATTTTAACCCTCGAACTTTCCAAAAATAT-A-ATTTTTACCCTCGAACTTCCC
*
84978 AAAAATTATATTTTAACCCTCGAACTTTCCAAAAATATAATTTTTACCCTCGAACTT-CT
1 AAAAATTATATTTTAACCCTCGAACTTTCCAAAAATATAATTTTTACCCTCGAACTTCCC
*
85037 AAAAATTATATTTTTACCCTCGAAC-TTCCAAAAA
1 AAAAATTATATTTTAACCCTCGAACTTTCCAAAAA
85071 ATCCGTTTCT
Statistics
Matches: 125, Mismatches: 18, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
56 8 0.06
57 26 0.21
58 21 0.17
59 35 0.28
60 26 0.21
61 8 0.06
62 1 0.01
ACGTcount: A:0.37, C:0.26, G:0.02, T:0.35
Consensus pattern (60 bp):
AAAAATTATATTTTAACCCTCGAACTTTCCAAAAATATAATTTTTACCCTCGAACTTCCC
Found at i:85114 original size:28 final size:29
Alignment explanation
Indices: 85059--85141 Score: 71
Period size: 29 Copynumber: 2.9 Consensus size: 29
85049 TTTACCCTCG
**
85059 AACTTCCAAAAAATC-CGTTTCTGCCCTT-A
1 AACTTCC-AAAAATCACGTTT-TTACCTTGA
85088 AACTTCCAAAAATCACGTTTTTACCTTGA
1 AACTTCCAAAAATCACGTTTTTACCTTGA
* * * * *
85117 ATCTTTCTAAAATGACATTTTTACC
1 AACTTCCAAAAATCACGTTTTTACC
85142 CCTAAAACTT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
28 12 0.27
29 33 0.73
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (29 bp):
AACTTCCAAAAATCACGTTTTTACCTTGA
Found at i:85597 original size:97 final size:97
Alignment explanation
Indices: 85431--85624 Score: 248
Period size: 97 Copynumber: 2.0 Consensus size: 97
85421 AAAATATTTA
* * * *
85431 AAATCGAGGCAATATTCGTTTATTTCAGGTTTTGAAAATTCGTGCCTTAACTTACTAGGCGCGAT
1 AAATCGAGGCAATATTCGTTTATCTCAGGTTTTGAAAATTCGTGCCTTAACTTACTAAGCACGAC
*
85496 TTTTCATCAAA-CTGGGATAATCAAATACCCTT
66 TTTTCATCAAATC-GGGATAACCAAATACCCTT
* * * *
85528 AAATCGAGGCAATGTTTC-TTTATCTCTGGTTTTGAAAATTTGTGCCTTAACTTACTAAGCATGA
1 AAATCGAGGCAAT-ATTCGTTTATCTCAGGTTTTGAAAATTCGTGCCTTAACTTACTAAGCACGA
* * *
85592 CTTTTCTTCTAATCGGGATAACCGAATACCCTT
65 CTTTTCATCAAATCGGGATAACCAAATACCCTT
85625 TTCCAAGGTT
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
97 79 0.95
98 4 0.05
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (97 bp):
AAATCGAGGCAATATTCGTTTATCTCAGGTTTTGAAAATTCGTGCCTTAACTTACTAAGCACGAC
TTTTCATCAAATCGGGATAACCAAATACCCTT
Found at i:89727 original size:29 final size:29
Alignment explanation
Indices: 89694--90226 Score: 273
Period size: 30 Copynumber: 18.2 Consensus size: 29
89684 CAGTAATCAA
* ** *
89694 ATTTTGACCCCAAACTTTTTAAAAGTTAC
1 ATTTTAACCCCAAACTTTCCAAAAATTAC
** *
89723 ATTTTAACCCCCAAAAATTCCAAAAATTAT
1 ATTTTAA-CCCCAAACTTTCCAAAAATTAC
** * * *
89753 AAATTGACCCTAAA-TTTCCTTAAAATTAC
1 ATTTTAACCCCAAACTTTCC-AAAAATTAC
* *
89782 ATTTTGACCCTAAACTTTCCAAAAATTAC
1 ATTTTAACCCCAAACTTTCCAAAAATTAC
* * *
89811 ATTTTATCCCTTAAATTTTCCAAAAATTAC
1 ATTTTAACCC-CAAACTTTCCAAAAATTAC
*
89841 ATTTTAACCCTCGAACTTTCCAAAAATTAC
1 ATTTTAACCC-CAAACTTTCCAAAAATTAC
* * *
89871 ATTTTAAACCTCAAACTTTCCAAAAAGTAT
1 ATTTT-AACCCCAAACTTTCCAAAAATTAC
* * *
89901 ATTTTAACCCTTAAACTTTCTAACAATTAC
1 ATTTTAACCC-CAAACTTTCCAAAAATTAC
* * *
89931 ATTTTAACCCCTAAACTTTCTAAATATTCC
1 ATTTTAACCCC-AAACTTTCCAAAAATTAC
* *
89961 ATTTTCACCCCAAAC-TTCC-AATATTCAC
1 ATTTTAACCCCAAACTTTCCAAAAATT-AC
* ** *
89989 ATTTT-TCCCTTGAAC-TTCCTAAAAATTAT
1 ATTTTAACCC-CAAACTTTCC-AAAAATTAC
* * *
90018 ATGTTGACCCTCGAACTTTCC-AAAATTAC
1 ATTTTAACCC-CAAACTTTCCAAAAATTAC
** * * * *
90047 ATTTTTGCCCTCGAAC-TTCTAAAAATAAT
1 ATTTTAACCC-CAAACTTTCCAAAAATTAC
* * ** *
90076 ATTTTTACTCTCGGAC-TTCCAAAAATTCC
1 ATTTTAAC-CCCAAACTTTCCAAAAATTAC
* *
90105 AATTTT-ACCCTTAAAGC-TTCCAAAAATCAC
1 -ATTTTAACCC-CAAA-CTTTCCAAAAATTAC
* * * *
90135 GTTTTTACCCCAAA-TCTTCCCAAAATGAC
1 ATTTTAACCCCAAACT-TTCCAAAAATTAC
* * *
90164 ATTTTTACCCCTAAAACTTT-CTAAAATTAT
1 ATTTTAACCCC--AAACTTTCCAAAAATTAC
* * *
90194 ATTTTAACCCCAAACTCTCTAAAACTT-C
1 ATTTTAACCCCAAACTTTCCAAAAATTAC
90222 ATTTT
1 ATTTT
90227 CGACCCCGTT
Statistics
Matches: 396, Mismatches: 83, Indels: 51
0.75 0.16 0.10
Matches are distributed among these distances:
27 9 0.02
28 35 0.09
29 142 0.36
30 196 0.49
31 13 0.03
32 1 0.00
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.36
Consensus pattern (29 bp):
ATTTTAACCCCAAACTTTCCAAAAATTAC
Found at i:90035 original size:58 final size:58
Alignment explanation
Indices: 89973--90131 Score: 164
Period size: 58 Copynumber: 2.7 Consensus size: 58
89963 TTTCACCCCA
* *
89973 AACTTCCAATATTCACATTTTTCCCTTGAACTTCCTAAAAATTATATGTTGACCCTCG
1 AACTTCCAAAATTCACATTTTTCCCTTGAACTTCCTAAAAATAATATGTTGACCCTCG
* * * *
90031 AACTTTCCAAAATT-ACATTTTTGCCCTCGAACTT-CTAAAAATAATATTTTTACTCTCG
1 AAC-TTCCAAAATTCACATTTTT-CCCTTGAACTTCCTAAAAATAATATGTTGACCCTCG
* * *
90089 GACTTCCAAAAATTC-CAATTTTACCCTTAAAGCTTCC-AAAAAT
1 AACTTCC-AAAATTCAC-ATTTTTCCCTTGAA-CTTCCTAAAAAT
90132 CACGTTTTTA
Statistics
Matches: 84, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
57 4 0.05
58 46 0.55
59 33 0.39
60 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (58 bp):
AACTTCCAAAATTCACATTTTTCCCTTGAACTTCCTAAAAATAATATGTTGACCCTCG
Found at i:90204 original size:59 final size:58
Alignment explanation
Indices: 89705--90226 Score: 260
Period size: 59 Copynumber: 8.9 Consensus size: 58
89695 TTTTGACCCC
* * * ** *
89705 AAACTTTTTAAAAGTTACATTTTAACCCCCAAAAATTCCAAAAATTATAAATTGA-CCCT-
1 AAACTTTCTAAAA-TTACATTTTAA-CCCC-AAACTTCCAAAAATTACATTTTTACCCCTA
* * * *
89764 AAA-TTTCCTTAAAATTACATTTTGACCCTAAACTTTCCAAAAATTACA-TTTTATCCCTT
1 AAACTTT-C-TAAAATTACATTTTAACCCCAAAC-TTCCAAAAATTACATTTTTACCCCTA
* * * ** *
89823 AAATTTTCCAAAAATTACATTTTAACCCTCGAACTTTCCAAAAATTACA-TTTTAAACCTC
1 AAACTTT-CTAAAATTACATTTTAACCC-CAAAC-TTCCAAAAATTACATTTTTACCCCTA
* * * * * * *
89883 AAACTTTCCAAAAAGTATATTTTAACCCTTAAACTTTCTAACAATTACATTTTAACCCCT-
1 AAACTTT-CTAAAATTACATTTTAACCC-CAAAC-TTCCAAAAATTACATTTTTACCCCTA
* * * *
89943 AAACTTTCTAAATATTCCATTTTCACCCCAAACTTCC-AATATTCACATTTTT--CCCTT
1 AAACTTTCTAAA-ATTACATTTTAACCCCAAACTTCCAAAAATT-ACATTTTTACCCCTA
* * * * * * * *
90000 GAACTTCCTAAAAATTATATGTTGACCCTCGAACTTTCC-AAAATTACATTTTT-GCCCTC
1 AAACTTTCT-AAAATTACATTTTAACCC-CAAAC-TTCCAAAAATTACATTTTTACCCCTA
* * * * * ** * * *
90059 GAAC-TTCTAAAAATAATATTTTTACTCTCGGACTTCCAAAAATTCCAATTTTACCCTTA
1 AAACTTTCT-AAAATTACATTTTAAC-CCCAAACTTCCAAAAATTACATTTTTACCCCTA
* * * * * * * *
90118 AAGCTTCCAAAAATCACGTTTTTACCCCAAATCTTCCCAAAATGACATTTTTACCCCTA
1 AAACTTTCTAAAATTACATTTTAACCCCAAA-CTTCCAAAAATTACATTTTTACCCCTA
* * *
90177 AAACTTTCTAAAATTATATTTTAACCCCAAACTCTCTAAAACTT-CATTTT
1 AAACTTTCTAAAATTACATTTTAACCCCAAACT-TCCAAAAATTACATTTT
90227 CGACCCCGTT
Statistics
Matches: 362, Mismatches: 80, Indels: 43
0.75 0.16 0.09
Matches are distributed among these distances:
56 4 0.01
57 32 0.09
58 92 0.25
59 129 0.36
60 98 0.27
61 7 0.02
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.36
Consensus pattern (58 bp):
AAACTTTCTAAAATTACATTTTAACCCCAAACTTCCAAAAATTACATTTTTACCCCTA
Found at i:90635 original size:97 final size:97
Alignment explanation
Indices: 90460--90649 Score: 301
Period size: 97 Copynumber: 2.0 Consensus size: 97
90450 AAAATATTTA
* *
90460 AAATCGAGGCAATATTCCTTTATTTCGGGTTTTGAAAATTCGTGCTTTAACTTACTAGGTGCGAT
1 AAATCGAGGCAATATTCCTTTATCTCGGGTTTTGAAAATTCGTGCTTTAACTTACTAGGCGCGAT
90525 TTTTCTTCAAATCGGGATAATCGAATACGCTT
66 TTTTCTTCAAATCGGGATAATCGAATACGCTT
* * * *
90557 AAATTGAGGCAATATTTCTTTATCTCTGGTTTTGAAAATTTGTG-TCTTAACTTACTAGGCGCGA
1 AAATCGAGGCAATATTCCTTTATCTCGGGTTTTGAAAATTCGTGCT-TTAACTTACTAGGCGCGA
*
90621 TTTTTCTTCTAATCGGGATAATCGAATAC
65 TTTTTCTTCAAATCGGGATAATCGAATAC
90650 CTTTTTCCAT
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
96 1 0.01
97 84 0.99
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (97 bp):
AAATCGAGGCAATATTCCTTTATCTCGGGTTTTGAAAATTCGTGCTTTAACTTACTAGGCGCGAT
TTTTCTTCAAATCGGGATAATCGAATACGCTT
Found at i:99041 original size:376 final size:379
Alignment explanation
Indices: 98349--99407 Score: 1113
Period size: 376 Copynumber: 2.8 Consensus size: 379
98339 ATATTTGTCT
* * * * **
98349 GTTGTTTCCATTGTAATTATGATTCTAATATTTC-ACTGAAAATTTCGCTTAAATATCTTCAAAA
1 GTTGTTTCCATTGTAATCATGACTCTAACATTTCAAC-GAAAAGTTCGCTTAAATATCACCAAAA
* * * * * * *
98413 ACA---A-TACT--TTT-TTTTTGAACATTATATACCATTTGTTTTGCGTTGTCAACTTTCACCA
65 ACATGCATTTCTCATTTATTTTTAAACATTATTTATCACTTGTTTTGCATTGTCAAATTTCACCA
* ** * * * * ** *
98471 CAATTCAAGTTTCCTATACGA-GTTGAGAGAAAAAAG-GGG-TGGAA-AAACACTTGGAATG-GT
130 CAATTCAACTTTCAGATAC-ACATCGAGTGAAAAAAGAGGGAT--AACAAA-ACATAAAAAGAG-
* * * * * * *
98531 TATTGGGGATGTTTATACAATCATTTCTAATTCTCTTAAAGGCTTCGCTCCTTGTTTTCAACCTC
190 T-TTGGGGGTGCTTATACAATCATGTCTATTTCCCTAAAAGGCTTCGCTCCCTGTTTTCAACCTC
* * *
98596 ACATTCGATATAAACTATTTTCTTCGAT-TCTCTTTTGTTTCAAGTATTTTGTGTCAAGTCTGGA
254 ACTTTCGATATAAACTATTTTCTTTGATCT-TCTTTTGTTTCAAGTATTTTGTGTCAAGTCTGAA
** * * * * *
98660 AATGCAGAGTATCCAATTGGTTAGAGGCCAACCAAGATACTTGCTTCCTAGCATAT-TTATCT-
318 AATGCAGAAAATCCAATTGGTTAGAGGCCAACCAAAACAATTGCTTCATACCATATATT-T-TA
*
98722 GTTGTTTCCATTGTAATCATGACTCTAATC-TTTCAAGGAAAAGTTCGCTTAAATATCACCAAAA
1 GTTGTTTCCATTGTAATCATGACTCTAA-CATTTCAACGAAAAGTTCGCTTAAATATCACCAAAA
** *
98786 A-ATGTGTTTCTCATTTATTTTTGAAA-TTTATTTATCACTTGTTTT-CATTGTCAAATTTCACC
65 ACATGCATTTCTCATTTATTTTT-AAACATTATTTATCACTTGTTTTGCATTGTCAAATTTCACC
* * * *
98848 ACAATTCAACTTTTAGATACACGTCGAGTGAAAAAGGGGGGA-AACAAAACATAAAAAGAGTTTG
129 ACAATTCAACTTTCAGATACACATCGAGTGAAAAAAGAGGGATAACAAAACATAAAAAGAGTTTG
* * *
98912 GGGGTGCTTATACAATCATGTCTATTTCCCTAAAAGGCTTTGCTCCCTATTTTCAACTTCACTTT
194 GGGGTGCTTATACAATCATGTCTATTTCCCTAAAAGGCTTCGCTCCCTGTTTTCAACCTCACTTT
* * *
98977 CGATATAAAATGTTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTCATGTCTGAAAATGCA
259 CGATATAAACTATTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTCAAGTCTGAAAATGCA
*
99042 GAAAATCCAATTGGTTAGAGGCCAACCAAAACAATTGTTTCATACCATATATTTTA
324 GAAAATCCAATTGGTTAGAGGCCAACCAAAACAATTGCTTCATACCATATATTTTA
* * * *
99098 GTTGTTTCCCTTGTAATTATGACTCTAACATTTCAACGAAAAGTTCGGTTAAATATCTCCAAAAA
1 GTTGTTTCCATTGTAATCATGACTCTAACATTTCAACGAAAAGTTCGCTTAAATATCACCAAAAA
* * *
99163 CATGCATTTCTCTTTTATTTTTAAACATTATTTATCACTTGTTTTGCATTGTTAAATTTCGCCAC
66 CATGCATTTCTCATTTATTTTTAAACATTATTTATCACTTGTTTTGCATTGTCAAATTTCACCAC
* * * ** *
99228 ATTTCAAGTTTCAGATACGCATCGAGTGAAAAAAGAGGGATAAGGAAACATAAAACGAGTTT-GG
131 AATTCAACTTTCAGATACACATCGAGTGAAAAAAGAGGGATAACAAAACATAAAAAGAGTTTGGG
* * * * * *
99292 GGTCCTTAGACAATCGTGTATATTTCCC-ATAAAGGCTTCACTCCCTGTTTTCATCCTCACTTT-
196 GGTGCTTATACAATCATGTCTATTTCCCTA-AAAGGCTTCGCTCCCTGTTTTCAACCTCACTTTC
** * * * *
99355 GATATAAACCCTTTTATTTTATCTTCTTTTGTATCAAGTCTTTTGTGTCAAGT
260 GATATAAACTATTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTCAAGT
99408 TTAAGTTCTT
Statistics
Matches: 573, Mismatches: 89, Indels: 44
0.81 0.13 0.06
Matches are distributed among these distances:
372 1 0.00
373 55 0.10
374 1 0.00
375 2 0.00
376 222 0.39
377 95 0.17
378 154 0.27
379 41 0.07
380 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (379 bp):
GTTGTTTCCATTGTAATCATGACTCTAACATTTCAACGAAAAGTTCGCTTAAATATCACCAAAAA
CATGCATTTCTCATTTATTTTTAAACATTATTTATCACTTGTTTTGCATTGTCAAATTTCACCAC
AATTCAACTTTCAGATACACATCGAGTGAAAAAAGAGGGATAACAAAACATAAAAAGAGTTTGGG
GGTGCTTATACAATCATGTCTATTTCCCTAAAAGGCTTCGCTCCCTGTTTTCAACCTCACTTTCG
ATATAAACTATTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTGTCAAGTCTGAAAATGCAGA
AAATCCAATTGGTTAGAGGCCAACCAAAACAATTGCTTCATACCATATATTTTA
Found at i:102059 original size:376 final size:377
Alignment explanation
Indices: 101321--102785 Score: 1784
Period size: 379 Copynumber: 3.9 Consensus size: 377
101311 TTGTGATACA
* * ** * *
101321 TGTTTCCTACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATTTTTCATTGAAAATT
1 TGTTTCCTACCATATTTGTCTATTGTTTCCATTGTAATTATGACTCTAATCTTTCAACGGAAAGT
* ** * * * * *
101386 TCGCTTAAATATCTTCAAAAACATTAGTTTTTTTCTTTTATTTTTTAACA-TTATATACCACTTG
66 TAGCTTAAATATCACCAAAAACA-T-GTGTTTCTCTTTTATTTTTGAA-ATTTATTTATCACTTG
** * * ** *
101450 TTTTGTGTTGTCAACTTTCACCACAAATTCAAGTTTCCTATACG-AGTTGAGTGAAAAAACGGTG
128 TTTTGCATTGTCAAATTTCACCAC-AATTCAACTTTCAGATACGCA-TTGAGTGAAAAAA-GGGG
* * * *
101514 GAAA-AAAACATAAAAAGGGTTTTGGGGTGTTTATACAATCATGTCTATTTCTCTTAAAGGCTTC
190 GAAACAAAACATAAAAAGAG-TTTGGGGTGCTTATACAATCATGTCTATTTCCCTAAAAGGCTTC
* * * * * *
101578 GCTCACTGTTTTCAGCCTCACTTTCGATATAAACTATTTTCTTTGATCATCTTTTGTTTCAAGTA
254 ACTCCCTATTTTCAACCTCACTTTCGATATAAACTGTTTTCTTTGATCTTCTTTTGTTTCAAGTA
* * * **
101643 TTTTGTGTCAAGTCTGAAAATATG--GAGTAT-CAAGTTGGTTAGAGTCCAACCAAGATGCC
319 TTTTGTGTCATGTCT-AAAA-ATGCAGAATATCCAA-TTGGTTAGAGACCAACCAAGATAAC
* * * * *
101702 TGCTTCCTAGCATATTTATCTATTGTTTCTATTGTAATTATGACTCTCATCTTTCAACGGAAAGT
1 TGTTTCCTACCATATTTGTCTATTGTTTCCATTGTAATTATGACTCTAATCTTTCAACGGAAAGT
101767 TAGCTTAAATATCACCAAAAACATGTGTTTCTCTTTTATTTTTGAAATTTATTTATCACTTGTTT
66 TAGCTTAAATATCACCAAAAACATGTGTTTCTCTTTTATTTTTGAAATTTATTTATCACTTGTTT
* * * *
101832 TGCATTGTCCAATTTTACCACAATTCAACTTTCAGATACGCACTGAGTG-TAAAAGGGGGAAACA
131 TGCATTGTCAAATTTCACCACAATTCAACTTTCAGATACGCATTGAGTGAAAAAAGGGGGAAACA
* *
101896 AAACATAAAAAGAGTTTAGGGGTGCTTATACAATCATGTTTATTTCCCTAAAATGCTT-ACTCCC
196 AAACATAAAAAGAGTTT-GGGGTGCTTATACAATCATGTCTATTTCCCTAAAAGGCTTCACTCCC
* *
101960 TATTTTCAACTTCACTTTCGATATAAATTGTTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGT
260 TATTTTCAACCTCACTTTCGATATAAACTGTTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGT
*
102025 GTCATGTCTAAAAATGCAGAATATCCAATTGGTTAGAGACCAACCAAGATAAT
325 GTCATGTCTAAAAATGCAGAATATCCAATTGGTTAGAGACCAACCAAGATAAC
** * *
102078 TGTTTTGTACCATATTTGTCTGTTGTTTCCATTGTAATTATGACTCTAATATTTCAACGGAAAGT
1 TGTTTCCTACCATATTTGTCTATTGTTTCCATTGTAATTATGACTCTAATCTTTCAACGGAAAGT
* *
102143 TCGCTTAAATAAT-ACCAAAAATATGTGTTTCTCTTTTATTTTTGAAATTTATTTATCACTTGTT
66 TAGCTTAAAT-ATCACCAAAAACATGTGTTTCTCTTTTATTTTTGAAATTTATTTATCACTTGTT
* ** * *
102207 TTGCATTGTCAAATTCCACCACAATTCTTCTTTCAGATACGCGTCGAGTGAAAAAAGGTGGGAAA
130 TTGCATTGTCAAATTTCACCACAATTCAACTTTCAGATACGCATTGAGTGAAAAAAGG-GGGAAA
*
102272 CTAAAA-ATAAAAAGAGTTTGGAGGTGCTTATACAATCATGTCTATTTCCCTAAAAGGCTTCGCT
194 C-AAAACATAAAAAGAGTTTGG-GGTGCTTATACAATCATGTCTATTTCCCTAAAAGGCTTCACT
* *
102336 CCCTATTTTCAACTTCACTTTCGATATAAACTGCTTTCTTTGATCTTCTTTTGTTTCAAGTATTT
257 CCCTATTTTCAACCTCACTTTCGATATAAACTGTTTTCTTTGATCTTCTTTTGTTTCAAGTATTT
* * * *
102401 TGTCTCATGTCTGAAAATGCAGAATATCCAATTGGTTAGAGGCCAACGAAGATAAC
322 TGTGTCATGTCTAAAAATGCAGAATATCCAATTGGTTAGAGACCAACCAAGATAAC
* * * *
102457 TGTTTCGTACCAAATTTGTCTATTGTTTCTATTGTAATTATGACTCTAATCTTTCAATGGAAAGT
1 TGTTTCCTACCATATTTGTCTATTGTTTCCATTGTAATTATGACTCTAATCTTTCAACGGAAAGT
* * ** * * *
102522 TCA-CTTAAATATCTCCAGAAATGTGTGTTTCTCTTTTATATTT-AAACATTATTTATCAATTGT
66 T-AGCTTAAATATCACCAAAAACATGTGTTTCTCTTTTATTTTTGAAA-TTTATTTATCACTTGT
* * *
102585 TTTGCATTGTCAAATTTCACCACAACTCAAGTTTCAGATACGCATTGAGTGAAAGAAGAGGGGAA
129 TTTGCATTGTCAAATTTCACCACAATTCAACTTTCAGATACGCATTGAGTGAAAAAAG-GGGGAA
* * * * * * * ** *
102650 ACGAAACATAAAACGAGTTTGGGGTACTTATACAATCGTGTATATCTCTCTTCAAGGCTCCACTC
193 ACAAAACATAAAAAGAGTTTGGGGTGCTTATACAATCATGTCTATTTCCCTAAAAGGCTTCACTC
* * * ** * * *
102715 CCTGTTTTCATCCTCACTTTTGATATAAACCCTTTTCTTTGATCTTCCTTTGTGTCAAGTCTTTT
258 CCTATTTTCAACCTCACTTTCGATATAAACTGTTTTCTTTGATCTTCTTTTGTTTCAAGTATTTT
102780 GTGTCA
323 GTGTCA
102786 AGTTTAAGTT
Statistics
Matches: 943, Mismatches: 123, Indels: 39
0.85 0.11 0.04
Matches are distributed among these distances:
374 3 0.00
375 4 0.00
376 264 0.28
377 66 0.07
378 181 0.19
379 349 0.37
380 2 0.00
381 74 0.08
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (377 bp):
TGTTTCCTACCATATTTGTCTATTGTTTCCATTGTAATTATGACTCTAATCTTTCAACGGAAAGT
TAGCTTAAATATCACCAAAAACATGTGTTTCTCTTTTATTTTTGAAATTTATTTATCACTTGTTT
TGCATTGTCAAATTTCACCACAATTCAACTTTCAGATACGCATTGAGTGAAAAAAGGGGGAAACA
AAACATAAAAAGAGTTTGGGGTGCTTATACAATCATGTCTATTTCCCTAAAAGGCTTCACTCCCT
ATTTTCAACCTCACTTTCGATATAAACTGTTTTCTTTGATCTTCTTTTGTTTCAAGTATTTTGTG
TCATGTCTAAAAATGCAGAATATCCAATTGGTTAGAGACCAACCAAGATAAC
Found at i:103099 original size:13 final size:13
Alignment explanation
Indices: 103081--103116 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
103071 TTGTTTAAAA
103081 ATTTAAATTTATT
1 ATTTAAATTTATT
103094 ATTTAAATTTATT
1 ATTTAAATTTATT
*
103107 -TTCAAATTTA
1 ATTTAAATTTA
103117 AAATTACTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (13 bp):
ATTTAAATTTATT
Found at i:103114 original size:31 final size:30
Alignment explanation
Indices: 103052--103118 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 30
103042 TCGAACTACC
*
103052 TTTAAATTTTTTTTAAAATTTGTTTAAAAA
1 TTTAAATTTTTTTTAAAATTTATTTAAAAA
**
103082 TTTAAATTTATTATTT-AAATTTATTTTCAAA
1 TTTAAATTT-TT-TTTAAAATTTATTTAAAAA
103113 TTTAAA
1 TTTAAA
103119 ATTACTATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 9 0.28
31 20 0.62
32 3 0.09
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (30 bp):
TTTAAATTTTTTTTAAAATTTATTTAAAAA
Found at i:103117 original size:18 final size:17
Alignment explanation
Indices: 103079--103136 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 17
103069 ATTTGTTTAA
103079 AAATTTAAATTTA-T-T
1 AAATTTAAATTTACTAT
* *
103094 --ATTTAAATTTATTTT
1 AAATTTAAATTTACTAT
*
103109 CAAATTTAAAATTACTAT
1 -AAATTTAAATTTACTAT
103127 AAATTTAAAT
1 AAATTTAAAT
103137 AAAGTTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
13 11 0.32
14 1 0.03
15 1 0.03
17 9 0.26
18 12 0.35
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
AAATTTAAATTTACTAT
Found at i:105037 original size:59 final size:59
Alignment explanation
Indices: 104923--105337 Score: 651
Period size: 59 Copynumber: 7.1 Consensus size: 59
104913 AATTTCCAAA
104923 TTTACCC-CTGAACTTCCAAAAATCCCA-TTTTGACCCCGAACCTTCTAAAAATTACCAT
1 TTTACCCTC-GAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTAAAAATTACCAT
* *
104981 TTTACCCTCAAACTTCCAAAAATCCCATTTTTGACCTCGAACCTTCTAAAAATTACCAT
1 TTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTAAAAATTACCAT
* * *
105040 TTTACCCTCGAACTTCCAAAAGTCCCATTTTTTACCATCGAACCTTCTAAAAATTACCAT
1 TTTACCCTCGAACTTCCAAAAATCCCATTTTTGACC-CCGAACCTTCTAAAAATTACCAT
105100 TTTACCCTCGAACTTCCAAAAAT-CCATTTTTGACCACCGAACCTTCTAAAAATTACCA-
1 TTTACCCTCGAACTTCCAAAAATCCCATTTTTGACC-CCGAACCTTCTAAAAATTACCAT
* *
105158 TTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTAAAAATTAACAT
1 TTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTAAAAATTACCAT
* *
105217 TTTACCCTCGAACTTCCAAAAATCCCATTTTTGATCCCGAACCATCTAAAAATTACCAT
1 TTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTAAAAATTACCAT
** *
105276 TTTATCCC-CGAACTTCCAAAAATCCCATTTTTGACCCTTAACTTTCTAAAAATTACCAT
1 TTTA-CCCTCGAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTAAAAATTACCAT
105335 TTT
1 TTT
105338 TGACTCCGAA
Statistics
Matches: 332, Mismatches: 19, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
58 67 0.20
59 217 0.65
60 48 0.14
ACGTcount: A:0.33, C:0.31, G:0.05, T:0.32
Consensus pattern (59 bp):
TTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCCGAACCTTCTAAAAATTACCAT
Done.