genome.fa.s13105.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013105.1 Kokia drynarioides strain JFW-HI SEQ_128123, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152853

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4741--4802	31	2.0	31	87	0	88	37	9	6	46	1.62
11482--11533	24	2.2	24	85	0	68	21	26	17	34	1.95
11493--11688	24	8.1	24	75	4	160	19	24	20	35	1.95
11504--11740	98	2.4	98	81	2	269	18	23	19	37	1.94
14318--14435	42	2.8	42	81	8	134	42	7	23	26	1.81
14345--14435	42	2.2	42	89	0	137	41	8	23	26	1.83
14357--14447	42	2.2	42	91	0	146	42	6	27	23	1.78
20949--21136	50	3.7	50	88	0	259	17	23	18	40	1.91
20938--21129	24	7.7	24	66	8	87	17	25	18	39	1.91
42961--43022	18	3.0	21	75	18	58	38	6	14	40	1.72
42979--43026	18	2.7	18	96	0	87	35	4	16	43	1.67
43154--43208	29	1.9	29	92	3	94	20	27	1	50	1.58
43437--43520	31	2.8	29	85	8	98	21	23	0	54	1.44
47266--47423	73	2.2	73	84	2	201	28	22	31	17	1.96
53770--53911	28	5.1	28	72	6	108	22	16	23	37	1.93
53773--53911	56	2.5	56	86	0	179	22	16	24	36	1.94
55931--55981	21	2.4	21	93	0	84	29	15	17	37	1.91
64454--64483	9	3.2	9	95	4	51	23	23	10	43	1.83
64456--64486	10	3.2	10	95	4	55	19	25	9	45	1.81
67060--67358	62	4.8	62	87	2	406	34	21	11	33	1.88
70400--70489	45	2.0	46	82	2	110	42	7	20	30	1.80
72068--72116	8	5.7	9	75	15	50	2	22	0	75	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72068--72122	25	2.2	25	84	12	69	1	21	0	76	0.88
78007--78039	17	1.9	17	88	11	50	18	6	24	51	1.68
78988--79012	9	2.8	9	100	0	50	12	0	24	64	1.27
86691--86737	24	2.0	24	87	8	69	51	8	12	27	1.69
88998--89054	18	3.3	18	66	14	57	19	31	7	42	1.78
88991--89057	33	2.0	33	97	0	125	20	32	5	40	1.77
89006--89060	18	3.2	18	65	15	53	20	36	5	38	1.75
90326--90431	20	5.2	20	74	5	79	48	11	6	33	1.65
91235--91268	2	17.0	2	100	0	68	0	0	50	50	1.00
97629--97679	26	1.9	26	84	11	68	66	0	21	11	1.23
98361--98440	23	3.5	23	89	0	115	33	18	25	22	1.97
103891--103949	31	1.9	31	89	6	93	54	5	11	28	1.58
106800--106860	31	1.9	32	83	3	79	34	16	13	36	1.87
111697--111757	27	2.3	27	100	0	122	63	14	11	9	1.51
115312--115525	101	2.1	101	88	1	322	33	21	18	26	1.97
116918--116948	14	2.2	14	94	0	53	38	0	0	61	0.96
117731--117856	33	3.7	32	74	20	89	46	1	1	50	1.20
117816--117857	14	3.1	14	77	16	52	50	0	0	50	1.00
117813--117857	21	2.1	21	87	0	63	48	0	0	51	1.00
119500--119754	72	3.6	71	94	2	431	54	16	6	22	1.64
120185--120236	18	2.9	18	85	0	68	36	9	11	42	1.74
127688--127723	17	2.1	17	89	0	54	44	25	13	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130205--130266	21	2.9	22	78	7	74	30	24	14	30	1.95
132463--132542	38	2.1	38	85	0	106	16	21	30	32	1.95
136177--136538	29	12.3	28	75	10	226	36	1	25	36	1.67
136177--136464	29	9.8	29	76	9	230	36	1	25	37	1.65
136177--136445	59	4.6	58	78	9	235	36	0	24	37	1.61
136188--136464	118	2.4	117	82	6	319	37	1	24	37	1.64
136438--136516	30	2.6	30	80	4	88	41	6	21	30	1.78
138211--138298	17	5.1	17	77	9	79	61	5	1	31	1.27
138218--138297	35	2.3	35	80	8	92	63	6	1	28	1.26
138787--138984	39	5.1	39	71	6	150	24	20	31	24	1.98
138812--139095	78	3.6	77	88	2	408	25	20	30	23	1.99
138808--139290	39	12.4	40	71	5	290	24	20	30	24	1.99
138796--139182	78	5.0	76	84	5	327	23	21	30	24	1.99
138952--139412	78	5.9	78	80	6	344	25	22	29	22	1.99
139069--139412	156	2.2	156	82	4	390	25	21	29	23	1.99
149460--149879	30	14.3	29	70	14	202	36	3	25	35	1.72
149544--149858	59	5.4	58	79	7	300	35	3	26	34	1.75
149807--149905	30	3.3	30	81	4	94	38	3	26	32	1.72
149852--149912	29	2.1	29	84	6	79	37	1	24	36	1.66
151489--151561	17	4.2	16	72	10	56	60	5	1	32	1.28
151496--151576	35	2.3	35	85	4	101	62	4	1	30	1.24

Tables:   1

The End!