Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013107.1 Kokia drynarioides strain JFW-HI SEQ_128126, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 833

Length: 1389
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.42


Found at i:692 original size:17 final size:17

Alignment explanation


    Indices: 672--705  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        662 TTTTACATGA

                             
        672 TTAAATAACATTTAAAT
          1 TTAAATAACATTTAAAT

                             
        689 TTAAATAACATTTAAAT
          1 TTAAATAACATTTAAAT

        706 AGATTTTTTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41


Consensus pattern (17 bp):   
TTAAATAACATTTAAAT

Found at i:1250 original size:13 final size:13

Alignment explanation


    Indices: 1213--1256  Score: 52
    Period size: 13  Copynumber: 3.2  Consensus size: 13

       1203 ATAATGGGGA

                           
       1213 GTATATTATTTTAAT
          1 GTATATTATTTT--T

                 *       
       1228 GTATAATATTTTT
          1 GTATATTATTTTT

            *            
       1241 TTATATTATTTTT
          1 GTATATTATTTTT

               
       1254 GTA
          1 GTA

       1257 AAAAACCCGA


Statistics
Matches: 25,  Mismatches: 4, Indels: 2
        0.81            0.13        0.06

Matches are distributed among these distances:
  13   14  0.56
  15   11  0.44

ACGTcount: A:0.30, C:0.00, G:0.07, T:0.64


Consensus pattern (13 bp):   
GTATATTATTTTT
Done.