Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013111.1 Kokia drynarioides strain JFW-HI SEQ_128130, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3639
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39


Found at i:1053 original size:26 final size:27

Alignment explanation


    Indices: 1024--1075  Score: 72
    Period size: 26  Copynumber: 2.0  Consensus size: 27

       1014 TATACACAAT

                                        
       1024 AAAGTATA-ACAATATATA-AATATTAC
          1 AAAGTATATA-AATATATATAATATTAC

                      *               
       1050 AAAGTATATATATATATATAATATTA
          1 AAAGTATATAAATATATATAATATTA

       1076 AATATATGCA


Statistics
Matches: 23,  Mismatches: 1, Indels: 3
        0.85            0.04        0.11

Matches are distributed among these distances:
  26   15  0.65
  27    8  0.35

ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37


Consensus pattern (27 bp):   
AAAGTATATAAATATATATAATATTAC

Found at i:3500 original size:15 final size:16

Alignment explanation


    Indices: 3477--3509  Score: 50
    Period size: 15  Copynumber: 2.1  Consensus size: 16

       3467 TTGCTGAATC

                            
       3477 ATATAAATTTTAA-AA
          1 ATATAAATTTTAATAA

                *           
       3492 ATATTAATTTTAATAA
          1 ATATAAATTTTAATAA

              
       3508 AT
          1 AT

       3510 GATATTTTCT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  15   12  0.75
  16    4  0.25

ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45


Consensus pattern (16 bp):   
ATATAAATTTTAATAA
Done.