Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013115.1 Kokia drynarioides strain JFW-HI SEQ_128134, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8527
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35


Found at i:1438 original size:16 final size:18

Alignment explanation


    Indices: 1417--1449  Score: 52
    Period size: 16  Copynumber: 1.9  Consensus size: 18

       1407 CTCTATACAT

                              
       1417 ATATATT-TTAT-TAAAA
          1 ATATATTGTTATATAAAA

                             
       1433 ATATATTGTTATATAAA
          1 ATATATTGTTATATAAA

       1450 TTTTATACAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  16    7  0.47
  17    4  0.27
  18    4  0.27

ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48


Consensus pattern (18 bp):   
ATATATTGTTATATAAAA
Done.