Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013117.1 Kokia drynarioides strain JFW-HI SEQ_128136, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 882

Length: 1471
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.31

Warning! 68 characters in sequence are not A, C, G, or T


Found at i:1061 original size:39 final size:39

Alignment explanation


    Indices: 932--1068  Score: 123
    Period size: 39  Copynumber: 3.5  Consensus size: 39

        922 GAACATTTAT

                                   * ***          * 
        932 AACTGGAAGTGACACTGTAAACATTGTGATAATATTACTG
          1 AACTGGAAGTGACACTGTAAACACTACAATAATA-TACAG

                                *          ** *     
        972 AACTGGCAA-TGACACTGTAGACACTACAATGCTGTACAG
          1 AACTGG-AAGTGACACTGTAAACACTACAATAATATACAG

               *  *                        *     * 
       1011 AACCGGTAGTGACACTGTAAACACTACAATATTATACGG
          1 AACTGGAAGTGACACTGTAAACACTACAATAATATACAG

              *                
       1050 AAATGGAAGTGACACTGTA
          1 AACTGGAAGTGACACTGTA

       1069 TACATTGAGA


Statistics
Matches: 76,  Mismatches: 19, Indels: 5
        0.76            0.19        0.05

Matches are distributed among these distances:
  38    1  0.01
  39   50  0.66
  40   23  0.30
  41    2  0.03

ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24


Consensus pattern (39 bp):   
AACTGGAAGTGACACTGTAAACACTACAATAATATACAG
Done.