Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013121.1 Kokia drynarioides strain JFW-HI SEQ_128140, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14462
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:2999 original size:26 final size:25

Alignment explanation


    Indices: 2949--2999  Score: 59
    Period size: 27  Copynumber: 2.0  Consensus size: 25

       2939 ATATTTAAGT

                      *               
       2949 TTTTAAAATATTTTATGTATCATTAA
          1 TTTTAAAATAATTTATGTA-CATTAA

                                      
       2975 TTTTACAAATAATTTATAGTA-ATTA
          1 TTTTA-AAATAATTTAT-GTACATTA

       3000 CTTAGAAGTA


Statistics
Matches: 22,  Mismatches: 1, Indels: 4
        0.81            0.04        0.15

Matches are distributed among these distances:
  26    9  0.41
  27   10  0.45
  28    3  0.14

ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51


Consensus pattern (25 bp):   
TTTTAAAATAATTTATGTACATTAA

Found at i:3796 original size:12 final size:12

Alignment explanation


    Indices: 3779--3804  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       3769 TAGAACTAAT

                        
       3779 TAAAATATTAAA
          1 TAAAATATTAAA

                        
       3791 TAAAATATTAAA
          1 TAAAATATTAAA

              
       3803 TA
          1 TA

       3805 CTAAATATAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35


Consensus pattern (12 bp):   
TAAAATATTAAA
Done.