Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013122.1 Kokia drynarioides strain JFW-HI SEQ_128141, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4087
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.26


Found at i:2130 original size:58 final size:58

Alignment explanation


    Indices: 2060--2175  Score: 223
    Period size: 58  Copynumber: 2.0  Consensus size: 58

       2050 GACATGATTG

                               *                                      
       2060 CGAAATCTCAAACGGAGGAGGAACATGTAAGAATCCTGAGAAAGTTATTTGGAAGGCT
          1 CGAAATCTCAAACGGAGGAAGAACATGTAAGAATCCTGAGAAAGTTATTTGGAAGGCT

                                                                      
       2118 CGAAATCTCAAACGGAGGAAGAACATGTAAGAATCCTGAGAAAGTTATTTGGAAGGCT
          1 CGAAATCTCAAACGGAGGAAGAACATGTAAGAATCCTGAGAAAGTTATTTGGAAGGCT

       2176 AAGGAAACAT


Statistics
Matches: 57,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  58   57  1.00

ACGTcount: A:0.39, C:0.14, G:0.27, T:0.21


Consensus pattern (58 bp):   
CGAAATCTCAAACGGAGGAAGAACATGTAAGAATCCTGAGAAAGTTATTTGGAAGGCT
Done.