Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013127.1 Kokia drynarioides strain JFW-HI SEQ_128146, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 886

Length: 1477
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34


Found at i:706 original size:27 final size:28

Alignment explanation


    Indices: 609--717  Score: 127
    Period size: 29  Copynumber: 3.9  Consensus size: 28

        599 GTCCCTGAAC

                           *             
        609 CTTCCAAAAATTACCGTTTTACCCCCGAA
          1 CTTCCAAAAATTACCATTTTA-CCCCGAA

            *                              
        638 TTTCCAAAAATCTA--ATTTTTAACCCCGAA
          1 CTTCCAAAAAT-TACCA-TTTT-ACCCCGAA

                                         
        667 GCTTCC-AAAATTACCATTTTACCCCGAA
          1 -CTTCCAAAAATTACCATTTTACCCCGAA

                                    
        695 CTTCC-AAAATTACCATTTTACCC
          1 CTTCCAAAAATTACCATTTTACCC

        718 TTGAGTTGTT


Statistics
Matches: 71,  Mismatches: 3, Indels: 14
        0.81            0.03        0.16

Matches are distributed among these distances:
  27   23  0.32
  28   10  0.14
  29   30  0.42
  30    8  0.11

ACGTcount: A:0.33, C:0.31, G:0.05, T:0.31


Consensus pattern (28 bp):   
CTTCCAAAAATTACCATTTTACCCCGAA
Done.