genome.fa.s13128.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013128.1 Kokia drynarioides strain JFW-HI SEQ_128147, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196367

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--90	3	30.0	3	77	12	78	58	1	4	35	1.25
6--93	30	2.9	30	78	8	99	59	1	4	35	1.25
437--474	11	3.4	11	88	3	58	73	0	23	2	0.95
1223--1501	29	9.5	29	77	8	219	35	27	3	33	1.73
1485--1546	27	2.2	29	80	8	74	35	25	9	29	1.88
1487--1545	28	2.1	28	84	3	75	33	25	10	30	1.89
8738--8766	10	2.9	10	100	0	58	41	31	0	27	1.56
13133--13403	119	2.3	119	90	0	443	35	19	22	22	1.96
13273--14060	206	3.8	205	89	1	1015	37	20	21	20	1.95
15110--15196	3	29.0	3	74	13	54	56	1	6	35	1.34
15544--15581	11	3.4	11	88	3	58	73	0	23	2	0.95
16324--16591	29	9.2	29	85	6	330	31	32	5	30	1.81
16324--16624	59	5.1	59	84	9	366	31	30	5	32	1.81
16337--16624	88	3.3	87	85	7	377	32	30	5	31	1.81
25160--25246	3	29.0	3	74	13	54	56	1	6	35	1.34
25594--25631	11	3.4	11	88	3	58	73	0	23	2	0.95
26374--26641	29	9.2	29	85	6	330	31	32	5	30	1.81
26374--26674	59	5.1	59	84	9	366	31	30	5	32	1.81
26387--26674	88	3.3	87	85	7	377	32	30	5	31	1.81
34508--34665	77	2.1	77	87	0	226	26	29	15	29	1.96
38323--38363	19	2.1	20	90	4	66	56	9	12	21	1.65
38333--38368	19	1.9	19	88	5	56	52	13	11	22	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38446--38484	21	1.9	20	89	5	60	74	17	0	7	1.05
38446--38498	21	2.6	19	80	16	54	73	18	0	7	1.06
38640--38712	34	2.1	34	84	0	92	36	1	5	56	1.31
38639--38719	17	4.8	17	80	4	83	37	1	6	55	1.33
40364--40629	30	9.1	29	69	12	134	32	26	7	34	1.83
40363--40629	59	4.6	59	76	6	233	32	26	7	34	1.83
40363--40639	29	9.5	30	69	11	155	32	25	6	34	1.83
40621--40699	30	2.6	28	77	15	79	36	16	2	44	1.61
41923--42043	59	2.1	58	92	1	197	31	0	19	47	1.55
42721--42777	31	1.9	28	86	10	78	45	15	0	38	1.47
47715--47757	2	21.5	2	95	0	77	46	2	0	51	1.13
49810--49851	19	2.2	20	83	8	52	9	2	9	78	1.05
49925--50014	46	1.9	48	86	8	132	37	6	0	55	1.26
49965--50007	19	2.3	19	84	8	52	34	9	0	55	1.32
49925--50048	48	2.6	47	80	15	123	36	6	1	55	1.35
50130--50185	20	2.9	18	81	5	58	28	3	3	64	1.27
51921--52010	39	2.3	39	80	0	117	37	18	20	23	1.94
58196--58334	67	2.1	67	91	0	224	30	18	28	22	1.97
58675--58774	39	2.6	39	80	0	119	37	19	19	25	1.94
59705--59732	5	5.6	5	100	0	56	42	0	17	39	1.50
61663--61732	23	3.0	23	76	2	77	42	17	11	28	1.83
62197--62276	15	5.2	16	66	14	51	45	0	2	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62148--62286	61	2.3	61	87	7	210	44	0	2	52	1.18
93765--93804	21	1.9	21	84	0	53	32	5	5	57	1.42
102202--102279	29	2.7	29	84	6	86	53	6	5	34	1.48
108555--108595	17	2.2	20	87	12	61	65	9	0	24	1.22
109922--109980	25	2.3	26	81	16	70	27	0	30	42	1.56
116905--116995	14	6.5	14	84	0	92	37	24	17	20	1.94
116929--116994	7	9.4	7	76	0	69	34	25	19	19	1.96
117031--117065	16	2.2	16	90	5	54	8	8	34	48	1.64
118428--118460	17	1.9	17	93	0	57	63	3	0	33	1.10
121010--121261	126	2.0	124	85	2	335	20	19	15	44	1.86
123695--123749	24	2.3	24	93	0	92	29	14	5	50	1.65
125908--125941	15	2.2	16	89	5	52	47	0	0	52	1.00
126315--126472	70	2.3	71	84	3	205	37	12	5	44	1.65
126620--126682	30	2.2	28	82	5	72	36	6	3	53	1.42
127860--127921	19	3.1	19	76	17	63	40	0	0	59	0.97
127867--127930	22	2.7	24	77	18	71	40	0	0	59	0.97
128650--128691	5	8.2	5	86	5	57	54	2	0	42	1.13
132792--132833	22	2.0	22	90	4	68	66	23	4	4	1.30
134144--134428	96	3.0	96	90	2	448	29	20	14	36	1.92
160759--160789	3	10.3	3	100	0	62	32	0	0	67	0.91
162620--162682	32	2.0	32	90	6	101	44	9	14	31	1.77
163567--163667	52	1.9	53	84	6	134	48	6	4	39	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165155--165246	47	2.0	47	97	0	175	25	20	14	40	1.90
168020--168090	31	2.3	31	83	11	85	46	21	11	21	1.82
168131--168174	14	3.0	14	80	6	52	52	18	4	25	1.64
168201--168316	47	2.4	47	83	8	128	56	19	6	18	1.62
168228--168317	47	1.9	47	88	6	139	56	17	5	20	1.60
168228--168348	47	2.6	46	78	13	124	56	19	4	20	1.58
176539--176563	2	12.5	2	100	0	50	52	0	0	48	1.00
177973--178185	83	2.6	80	82	8	243	32	15	10	42	1.80
179752--179789	19	2.0	20	89	5	60	23	13	23	39	1.90
180455--180544	29	3.1	29	78	1	99	26	18	27	26	1.98
181611--181644	13	2.6	13	95	0	59	47	0	29	23	1.52
189771--189808	14	2.5	15	87	8	51	52	7	10	28	1.64
189813--189857	19	2.4	18	81	3	54	51	4	11	33	1.58
190904--191242	29	11.6	29	74	15	261	33	28	3	34	1.75
190899--191265	59	6.3	59	85	3	476	34	28	4	33	1.76
190899--191302	117	3.4	116	86	7	507	33	28	3	33	1.76
191530--191559	14	2.1	14	93	0	51	50	6	0	43	1.28
192666--192713	20	2.5	19	78	18	55	43	2	12	41	1.54
193165--193205	13	3.2	13	83	13	57	36	4	21	36	1.75
193165--193242	26	3.0	26	79	5	86	37	3	20	38	1.71
193174--193221	13	3.7	13	85	0	60	35	2	25	37	1.68
195624--195822	100	2.0	100	96	0	371	31	10	18	39	1.84

Tables:   1

The End!