Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013131.1 Kokia drynarioides strain JFW-HI SEQ_128150, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2936
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.26
Warning! 119 characters in sequence are not A, C, G, or T
Found at i:378 original size:215 final size:216
Alignment explanation
Indices: 1--1931 Score: 2076
Period size: 215 Copynumber: 8.9 Consensus size: 216
*
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
* * * * *
66 ACCAAATGATGTGATTTCTCGAGCATGGAATATTC-GAAAAATTGCTGCAAGGAATGTATCGTCT
66 ACCAAATGATGCGATTTCCCGAGCATGGAAAATTCAG-AAAATTGCTGAAAGGAATGGATCGTCT
* * * * *
130 TGAATACTTTAAGGATCCAATGTTATGAAAGAACTAG-AAAAATTTGACAAGTTCAAAAGTTCGA
130 TGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGT
* *
194 CAAAGAACAAAGAGAGAAGCAA
195 CCAAGAACAAAGAGAGAAACAA
*
216 TTCTCACGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
* * * * *
281 ACCAAATGATACGATTTGCCGAGCATAGAAAATTCAGAAAATTGCTGAAATGATTGGATCGTCTT
66 ACCAAATGATGCGATTTCCCGAGCATGGAAAATTCAGAAAATTGCTGAAAGGAATGGATCGTCTT
* * * *
346 GAATACTTTAAGGTTCCAAAGTTATAAAAGAACTAGTGAAAGGTTGACAGGTTCGAAAGTTCGTC
131 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
411 CAAGAACAAAGAGAGAAACAA
196 CAAGAACAAAGAGAGAAACAA
* * *
432 TTCTCAAGTAAATAAGTTTTTAATTCAAAGACCTAAACTTGTTTACAAAATGACAAACTATTTAG
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
* * * *********************************
497 ACCAAGTGATGCGATTTCCCAAGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 ACCAAATGATGCGATTTCCCGAGCAT------GGAAAATTCAGAAAATTGCTGAAAGGAATGGAT
************ * * * *
562 NNNNNNNNNNNGTTTAAGGTTCCAAAGTTATAAAAGAACTAGTGAAAGGTTGACAGGTTC-AGAA
125 CGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGA-AA
*
626 GTTCGTCCAAGAACAAAGAGAGAAGCAA
189 GTTCGTCCAAGAACAAAGAGAGAAACAA
* * *
654 TTCTCACGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAGAACGACAAACTATTTAG
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
* *
719 ACCAAATGATGCGATTTGCCGAGCATGGAAAATTCAGAAAATTGCTGAAATGAATGGATCGTCTT
66 ACCAAATGATGCGATTTCCCGAGCATGGAAAATTCAGAAAATTGCTGAAAGGAATGGATCGTCTT
* * * * * * *
784 GAATACTTTAAGGTTCCAAAGTTATAAAAGAACAAGTGAAAGGTTAACAGGTTCGGAAGTTCGTC
131 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
849 CAAGAACAAAGAGAGAAACAA
196 CAAGAACAAAGAGAGAAACAA
* *
870 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCTAAACTTGTTTACAAAATGACAAACTATTTAG
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
* * * ** ** * * *
935 ACCAAGTGATGCGATTTCCCAAGGATGGAATGTTC-GAAAAATTGCT-ATAAAAAATGGTTCTTG
66 ACCAAATGATGCGATTTCCCGAGCATGGAAAATTCAG-AAAATTGCTGA-AAGGAATGGATCGTC
* * * * * * * *
998 TCGAATACTTTAGGGAACTGAAA-TTAAAAAATAACTCGTAAAAGTTCGACAAGTTCGAAAGTTC
129 TTGAATACTTTAAGGATC-CAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTC
1062 GTCCAAGAACAAAGAGAGAAACAA
193 GTCCAAGAACAAAGAGAGAAACAA
* * * *
1086 TTCTCACGT-ATTAAGTTTTTAATTTAAAGACCAAAACTTGTTTGCAGAATGACAAATTATTTAG
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
* * * *
1150 ACCAAATGATGCGATTTCCCTAGCAT-G-AAATGTCCAGAAAATTGCTCAAAAGAATAGATCGTC
66 ACCAAATGATGCGATTTCCCGAGCATGGAAAAT-T-CAGAAAATTGCTGAAAGGAATGGATCGTC
* * **
1213 TTGAATACTTTAAGGATCCAATGTTATAAAAGAACTAGTAAAAGTTTGA-TAGTTTCGAATCTTC
129 TTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAG-TTCGAAAGTTC
*
1277 GTCCAAGAACAACGAGAGAAACAA
193 GTCCAAGAACAAAGAGAGAAACAA
*
1301 TTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
* * * * * * *
1366 GCCAAATGATTCGATTTGCCGAGCACGGAATATT-TGAAAAATTGCTCG-AAGGAATGGATCTTC
66 ACCAAATGATGCGATTTCCCGAGCATGGAAAATTCAG-AAAATTGCT-GAAAGGAATGGATCGTC
* * *
1429 TTGAATAATTTATGGATCCAAAGTTATAAAAGAACTTG-AAAATGTTTGACAAGTTCGAAAGTTC
129 TTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAA-GTTTGACAAGTTCGAAAGTTC
** * *
1493 GTATAA-AGCAAAGAAAGAAACAA
193 GTCCAAGAACAAAGAGAGAAACAA
* * * *
1516 TTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGATTGCTAAATGACAAACTATTTAG
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
* * **
1581 ACCAAATGATGCGATTTCCCGAGCATCGAATATTC-GAAAAATTGCTCCAAGGAATGGATCGTCT
66 ACCAAATGATGCGATTTCCCGAGCATGGAAAATTCAG-AAAATTGCTGAAAGGAATGGATCGTCT
* * * **
1645 TGAATACTTTAAGGATCCAATGTTATGAAAGAACTAG-AAAATTTTGACAAGTTCGAAAGTTCAA
130 TGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGT
* * *
1709 CAAAGAACAAAGAGAGAAGCAT
195 CCAAGAACAAAGAGAGAAACAA
* **
1731 TTCTCACGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAACAACAAACTATTTAG
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
* * *
1796 ACCAAATGATGCGATTTGCCGAGCATGGAAAATTCAGAAAATTGCTGAAATGAATGGTTCGTCTT
66 ACCAAATGATGCGATTTCCCGAGCATGGAAAATTCAGAAAATTGCTGAAAGGAATGGATCGTCTT
* * * * * * *
1861 TAATACTTTAAGGTTCCAAAGTTATAAAAGAACAAGTGAAAGGTTGACAGGTTCGGAAGTTCGTC
131 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
1926 CAAGAA
196 CAAGAA
1932 NNNNNNNNNN
Statistics
Matches: 1407, Mismatches: 278, Indels: 61
0.81 0.16 0.03
Matches are distributed among these distances:
213 2 0.00
214 28 0.02
215 649 0.46
216 559 0.40
217 7 0.00
218 3 0.00
221 1 0.00
222 158 0.11
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.27
Consensus pattern (216 bp):
TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
ACCAAATGATGCGATTTCCCGAGCATGGAAAATTCAGAAAATTGCTGAAAGGAATGGATCGTCTT
GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
CAAGAACAAAGAGAGAAACAA
Found at i:1288 original size:431 final size:431
Alignment explanation
Indices: 1--1931 Score: 2133
Period size: 431 Copynumber: 4.5 Consensus size: 431
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
* * * * *
66 ACCAAATGATGTGATTTCTCGAGCATGGAATATTCGAAAAATTGCTGCAAGGAAT-GTATCGTCT
66 ACCAAATGATGCGATTTCCCAAGCATGGAATATTCGAAAAATTGCTACAAGGAATGGT-TCTTCT
* * * * *
130 TGAATACTTTAAGGATCCAATGTTATGAAAGAACTAGAAAAATTTGACAAGTTCAAAAGTTCGAC
130 TGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGAAAAGTTTGACAAGTTCGAAAGTTCGTC
* * *
195 AAAGAACAAAGAGAGAAGCAATTCTCACGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTT
195 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT
* * *
260 GCAAAATGACAAACTATTTAGACCAAATGATACGATTTGCCGAGCATAGAAAATTCAGAAAATTG
260 GCAGAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAAAATTCAGAAAATTG
* * * *
325 CTGAAATGATTGGATCGTCTTGAATACTTTAAGGTTCCAAAGTTATAAAAGAACTAGTGAAAGGT
325 CTCAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGGT
390 TGACAGGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
390 TGACAGGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
* *
432 TTCTCAAGTAAATAAGTTTTTAATTCAAAGACCTAAACTTGTTTACAAAATGACAAACTATTTAG
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
* * *********************************
497 ACCAAGTGATGCGATTTCCCAAGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 ACCAAATGATGCGATTTCCCAAGCAT------GGAATATTCGAAAAATTGCTACAAGGAATGGTT
************ * * * *
562 NNNNNNNNNNNGTTTAAGGTTCCAAAGTTATAAAAGAACTAGTGAAAGGTTGACAGGTTC-AGAA
125 CTTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAG-AAAAGTTTGACAAGTTCGA-AA
* *
626 GTTCGTCCAAGAACAAAGAGAGAAGCAATTCTCACGTAAATAAGTTTTTAATTCAACGACCAAAA
188 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * *
691 CTTGTTTGCAGAACGACAAACTATTTAGACCAAATGATGCGATTTGCCGAGCATGGAAAATTCAG
253 CTTGTTTGCAGAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAAAATTCAG
* * *
756 AAAATTGCTGAAATGAATGGATCGTCTTGAATACTTTAAGGTTCCAAAGTTATAAAAGAACAAGT
318 AAAATTGCTCAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGT
* * *
821 GAAAGGTTAACAGGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAA
383 AAAAGGTTGACAGGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
*
870 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCTAAACTTGTTTACAAAATGACAAACTATTTAG
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
* * * * ** * *
935 ACCAAGTGATGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTATAAAAAATGGTTCTTGTC
66 ACCAAATGATGCGATTTCCCAAGCATGGAATATTCGAAAAATTGCTACAAGGAATGGTTCTTCTT
* * * * * * *
1000 GAATACTTTAGGGAACTGAAA-TTAAAAAATAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGT
131 GAATACTTTAAGGATC-CAAAGTTATAAAAGAACTAG-AAAAGTTTGACAAGTTCGAAAGTTCGT
* *
1064 CCAAGAACAAAGAGAGAAACAATTCTCACGT-ATTAAGTTTTTAATTTAAAGACCAAAACTTGTT
194 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
* *
1128 TGCAGAATGACAAATTATTTAGACCAAATGATGCGATTTCCCTAGCAT-G-AAATGTCCAGAAAA
259 TGCAGAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAAAAT-T-CAGAAAA
* * *
1191 TTGCTCAAAAGAATAGATCGTCTTGAATACTTTAAGGATCCAATGTTATAAAAGAACTAGTAAAA
322 TTGCTCAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAA
* * * ** *
1256 GTTTGATAGTTTCGAATCTTCGTCCAAGAACAACGAGAGAAACAA
387 GGTTGACAGGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
* *
1301 TTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
* * * * * * *
1366 GCCAAATGATTCGATTTGCCGAGCACGGAATATTTGAAAAATTGCT-CGAAGGAATGGATCTTCT
66 ACCAAATGATGCGATTTCCCAAGCATGGAATATTCGAAAAATTGCTAC-AAGGAATGGTTCTTCT
* * *
1430 TGAATAATTTATGGATCCAAAGTTATAAAAGAACTTGAAAATGTTTGACAAGTTCGAAAGTTCGT
130 TGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGAAAA-GTTTGACAAGTTCGAAAGTTCGT
** * * * * *
1495 ATAA-AGCAAAGAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGAT
194 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
* *
1559 TGCTA-AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATCGAATATTC-GAAAAA
259 TGC-AGAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAAAATTCAG-AAAA
* * * *
1622 TTGCTCCAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAATGTTATGAAAGAACTAG-AAAA
322 TTGCTCAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAA
** * ** * * *
1686 TTTTGACAAGTTCGAAAGTTCAACAAAGAACAAAGAGAGAAGCAT
387 GGTTGACAGGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
* * **
1731 TTCTCACGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAACAACAAACTATTTAG
1 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
* * * * *
1796 ACCAAATGATGCGATTTGCCGAGCATGGAAAATTC-AGAAAATTGCTGA-AATGAATGGTTCGTC
66 ACCAAATGATGCGATTTCCCAAGCATGGAATATTCGA-AAAATTGCT-ACAAGGAATGGTTCTTC
* * * * * * *
1859 TTTAATACTTTAAGGTTCCAAAGTTATAAAAGAACAAGTGAAAGGTTGACAGGTTCGGAAGTTCG
129 TTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAG-AAAAGTTTGACAAGTTCGAAAGTTCG
1924 TCCAAGAA
193 TCCAAGAA
1932 NNNNNNNNNN
Statistics
Matches: 1249, Mismatches: 225, Indels: 52
0.82 0.15 0.03
Matches are distributed among these distances:
429 5 0.00
430 237 0.19
431 559 0.45
432 74 0.06
433 7 0.01
437 28 0.02
438 339 0.27
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.27
Consensus pattern (431 bp):
TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
ACCAAATGATGCGATTTCCCAAGCATGGAATATTCGAAAAATTGCTACAAGGAATGGTTCTTCTT
GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGAAAAGTTTGACAAGTTCGAAAGTTCGTCC
AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTG
CAGAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAAAATTCAGAAAATTGC
TCAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGGTT
GACAGGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
Found at i:2848 original size:216 final size:216
Alignment explanation
Indices: 1982--2931 Score: 1162
Period size: 215 Copynumber: 4.4 Consensus size: 216
1972 NNNNNNNNNN
*
1982 AATTGCT-GAAATGAATGGATCGTCTTGAATACTTTAAGGTTCCAAAGTTATAAAAGAACTAGTA
1 AATTGCTCGAAAT-AATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTA
* *
2046 AAAGGTTGACAAGTTCGAAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
65 AAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * *
2111 TTTTAATTCAAAGAACAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATGATACGATTT
130 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* *
2176 GCCGAGCATGGAA-AATTCAGAA
195 CCCGAGCATGGAATAA-TCAAAA
* * *
2198 AATTGCT-GAAATGAATGGATCGTCTTGAATACTTTAAGGTTCCAAAGTTATAAAAGAAATAGTG
1 AATTGCTCGAAAT-AATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTA
* * * *
2262 AAAGGTTGACAGGTTCGGAAGTTCGTCCAAGAACAAAAAGAGAAACAATTCTCACGTAAATAAGT
65 AAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
*
2327 TTTTAATTCAAAGACCAAAACTTGTTTACAAAA-GACAAACTATTTAGACCAAGTGATGCGATTT
130 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * ** *
2391 CCCAAGGATGGAATGTTCGAAA
195 CCCGAGCATGGAATAATCAAAA
* * * * ** * * *
2413 AATTGCTCTGAAA-AATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTA
1 AATTGCTC-GAAATAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTA
* *************
2477 AAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTNNNNNNNNNNNNN
65 AAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
****** * * *
2542 NNNNNNTT-AAAGACCAAAACTTGTTTGCAGAATGACAAATTATTTAGACCAAATGATGCGATTT
130 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* ** *
2606 CCCGAGCATGAAATGTTCAGAA
195 CCCGAGCATGGAATAATCAAAA
* *
2628 AATTGCTCGAAATAATAGATCGTCTTGAATACTTTAAGGATCCAATGTTATAAAAGAACTAGTAA
1 AATTGCTCGAAATAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAA
* * * *
2693 AAGTTTGA-TAGTTTCGAAACTTCGTCCAAGAACAACGAGAGAAACAATTCTCACGTAAATAAAT
66 AAGTTTGACAAG-TTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
*
2757 TTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
130 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
2822 CCCGAGCATGGAATAATCAAAA
195 CCCGAGCATGGAATAATCAAAA
* * *
2844 AATTGCTC-AAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAATGTTATGAAAGAACTAG-A
1 AATTGCTCGAAA-TAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTA
*
2907 AAATTTTGACAAGTTCGAAAGTTCG
65 AAAGTTTGACAAGTTCGAAAGTTCG
2932 ACAAA
Statistics
Matches: 616, Mismatches: 109, Indels: 19
0.83 0.15 0.03
Matches are distributed among these distances:
214 28 0.05
215 302 0.49
216 282 0.46
217 4 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.27
Consensus pattern (216 bp):
AATTGCTCGAAATAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAA
AAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
TTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
CCGAGCATGGAATAATCAAAA
Done.