Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013132.1 Kokia drynarioides strain JFW-HI SEQ_128151, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17182
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:14608 original size:16 final size:16

Alignment explanation


    Indices: 14589--14621  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

      14579 TATTAAATGT

                            
      14589 AAAAAAATTAATTTAA
          1 AAAAAAATTAATTTAA

                      *     
      14605 AAAAAAATTATTTTAA
          1 AAAAAAATTAATTTAA

             
      14621 A
          1 A

      14622 GATAAAATGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (16 bp):   
AAAAAAATTAATTTAA
Done.