Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013138.1 Kokia drynarioides strain JFW-HI SEQ_128157, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2111
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1967 original size:45 final size:45

Alignment explanation


    Indices: 1900--2014  Score: 140
    Period size: 45  Copynumber: 2.6  Consensus size: 45

       1890 GGGAGGAATA

                  *   *      *             *             
       1900 GAGTATCGCGATGGCTCATCAAACTCAGCTTGATATCCTTCCCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTCAGCTTAATATCCTTCCCTT

                    *              * *  *           **   
       1945 GAGTATTGTGGTGGCTCGTCAAATTTAGGTTAATATCCTTGGCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTCAGCTTAATATCCTTCCCTT

                                     
       1990 GAGTATTGCGGTGGCTCGTCAAACT
          1 GAGTATTGCGGTGGCTCGTCAAACT

       2015 GAGGCTGATA


Statistics
Matches: 58,  Mismatches: 12, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  45   58  1.00

ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34


Consensus pattern (45 bp):   
GAGTATTGCGGTGGCTCGTCAAACTCAGCTTAATATCCTTCCCTT

Found at i:2042 original size:55 final size:55

Alignment explanation


    Indices: 1977--2080  Score: 199
    Period size: 55  Copynumber: 1.9  Consensus size: 55

       1967 ATTTAGGTTA

                                   *                               
       1977 ATATCCTTGGCTTGAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATACGCTG
          1 ATATCCTTGGCTTGAGTATTGCGATGGCTCGTCAAACTGAGGCTGATATACGCTG

                                                             
       2032 ATATCCTTGGCTTGAGTATTGCGATGGCTCGTCAAACTGAGGCTGATAT
          1 ATATCCTTGGCTTGAGTATTGCGATGGCTCGTCAAACTGAGGCTGATAT

       2081 CCTTGGCTTG


Statistics
Matches: 48,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  55   48  1.00

ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32


Consensus pattern (55 bp):   
ATATCCTTGGCTTGAGTATTGCGATGGCTCGTCAAACTGAGGCTGATATACGCTG
Done.