Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013144.1 Kokia drynarioides strain JFW-HI SEQ_128163, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4403
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:1630 original size:1 final size:1

Alignment explanation


    Indices: 1619--1657  Score: 69
    Period size: 1  Copynumber: 39.0  Consensus size: 1

       1609 TTTGAATAAT

                *                                  
       1619 AAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

       1658 NNNNNNNNNN


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   1   36  1.00

ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00


Consensus pattern (1 bp):   
A

Found at i:2188 original size:10 final size:10

Alignment explanation


    Indices: 2164--2197  Score: 50
    Period size: 10  Copynumber: 3.2  Consensus size: 10

       2154 CATCTGTTTG

                        
       2164 AATAATAAAAGA
          1 AATAA-AAAA-A

                      
       2176 AATAAAAAAA
          1 AATAAAAAAA

                      
       2186 AATAAAAAAA
          1 AATAAAAAAA

              
       2196 AA
          1 AA

       2198 GGAAGTGCAG


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  10   13  0.59
  11    4  0.18
  12    5  0.23

ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12


Consensus pattern (10 bp):   
AATAAAAAAA
Done.