Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001315.1 Kokia drynarioides strain JFW-HI SEQ_112735, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2638
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.38


Found at i:1821 original size:19 final size:20

Alignment explanation


    Indices: 1797--1843  Score: 62
    Period size: 20  Copynumber: 2.4  Consensus size: 20

       1787 AAAAAAATTA

                                 
       1797 GAATTTTT-ATAAA-TATTTT
          1 GAATTTTTGA-AAATTATTTT

                                
       1816 GAATTTTTGAAAATTATTTT
          1 GAATTTTTGAAAATTATTTT

            *       
       1836 AAATTTTT
          1 GAATTTTT

       1844 TGTAAGTTTT


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  19   11  0.44
  20   14  0.56

ACGTcount: A:0.36, C:0.00, G:0.06, T:0.57


Consensus pattern (20 bp):   
GAATTTTTGAAAATTATTTT

Done.