genome.fa.s13152.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013152.1 Kokia drynarioides strain JFW-HI SEQ_128171, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121818

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1057--1093	19	1.9	19	88	0	56	72	2	16	8	1.19
6312--6342	10	3.0	10	95	4	53	22	0	0	77	0.77
6993--7067	34	2.2	34	83	11	91	42	1	26	29	1.63
7343--7556	30	7.2	28	81	9	119	41	20	2	35	1.67
7396--7659	30	8.8	30	82	2	289	40	21	2	34	1.67
7365--7659	60	4.9	60	78	5	283	40	22	2	34	1.68
7365--7659	91	3.3	89	80	4	297	40	22	2	34	1.68
7365--7659	121	2.5	118	81	6	353	40	22	2	34	1.68
7688--7718	2	15.5	2	100	0	62	48	0	0	51	1.00
7788--7831	22	2.0	22	86	0	61	20	0	9	70	1.14
9766--10510	29	25.8	29	79	5	496	35	3	26	34	1.73
9766--10589	58	14.2	58	77	8	549	35	3	26	34	1.72
9810--10478	173	3.9	172	80	6	692	35	3	27	34	1.74
9785--10592	29	27.9	28	77	7	303	36	3	25	34	1.72
12115--12184	17	4.2	16	80	5	68	60	7	1	31	1.33
12109--12183	34	2.2	34	85	2	98	60	6	1	32	1.31
12659--13219	39	14.3	39	67	16	214	26	19	30	23	1.98
12661--12877	121	1.8	120	87	3	328	25	17	31	24	1.97
12781--13220	78	5.6	77	85	1	556	26	20	30	22	1.98
12781--13220	156	2.8	155	89	1	639	26	20	30	22	1.98
22791--23651	29	29.9	28	75	10	225	35	2	23	37	1.69
22756--23554	29	27.9	29	76	7	614	34	2	25	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25154--25230	34	2.3	34	88	2	111	57	6	1	35	1.33
25154--25230	17	4.6	17	77	6	77	57	6	1	35	1.33
25132--25244	11	9.2	13	69	19	64	54	5	0	38	1.29
25214--25244	7	4.6	7	92	8	55	58	0	0	41	0.98
27300--27324	6	4.2	6	100	0	50	32	16	36	16	1.90
32923--32955	3	11.0	3	100	0	66	33	0	0	66	0.92
34502--34617	37	3.2	36	68	14	103	32	21	19	25	1.97
34347--34617	72	3.7	71	77	10	251	31	23	19	26	1.98
43620--43663	14	2.9	15	80	13	54	65	0	0	34	0.93
45763--46110	123	2.8	123	88	8	503	42	8	11	37	1.72
45970--46016	22	2.2	21	81	11	51	55	2	12	29	1.49
50172--50207	16	2.2	16	95	0	63	22	33	16	27	1.95
50666--50737	30	2.4	30	86	4	92	8	12	25	54	1.65
50682--50757	30	2.5	30	87	4	100	13	13	21	52	1.73
59410--59456	22	2.2	21	81	11	51	59	2	8	29	1.39
59308--59790	122	3.9	124	86	3	649	44	5	10	38	1.63
61524--61567	23	1.9	23	86	9	63	81	0	9	9	0.87
64491--64548	27	2.2	25	84	12	71	50	15	8	25	1.73
65360--65405	24	1.9	24	82	8	58	23	4	8	63	1.42
65308--65485	60	2.9	58	80	10	171	26	8	11	53	1.66
65365--65485	60	2.0	60	87	4	172	25	10	12	51	1.72
65545--65590	16	2.6	18	77	16	51	50	6	6	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65688--65763	32	2.5	31	86	4	100	48	10	13	27	1.75
65764--65838	30	2.5	30	91	2	114	57	9	2	30	1.44
83515--83652	58	2.4	58	78	4	136	27	22	19	30	1.98
83787--83847	28	2.2	28	93	0	104	36	22	11	29	1.90
89432--89691	41	6.3	41	83	0	295	26	23	10	40	1.86
89432--89691	82	3.1	82	86	2	360	26	23	10	40	1.86
89432--89669	123	1.9	124	86	0	334	25	23	10	40	1.86
99219--99269	17	2.9	17	81	16	59	78	0	19	1	0.85
99220--99269	12	4.4	11	80	14	57	80	0	18	2	0.82
102389--102434	25	1.9	23	86	8	65	32	4	6	56	1.45
103537--103567	15	2.1	15	93	0	53	16	9	0	74	1.07
106427--106472	6	7.7	6	97	0	65	17	8	0	73	1.07
106424--106477	6	8.8	6	93	2	63	18	7	0	74	1.05
107375--107408	13	2.6	13	86	13	52	76	0	11	11	1.02
107386--107442	23	2.5	23	81	18	82	75	0	17	7	1.02
107389--107441	22	2.4	22	87	6	72	75	0	16	7	1.02
107390--107452	33	1.9	33	83	6	83	76	1	15	6	1.07
107386--107443	24	2.5	23	78	15	75	75	0	17	6	1.01
113505--113700	99	2.0	99	97	0	374	47	14	16	21	1.82
120755--120945	29	6.6	29	70	12	124	32	3	26	37	1.74
120758--121292	30	18.2	29	73	13	246	36	2	22	37	1.69
120873--121280	59	6.9	59	76	11	254	38	1	20	39	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121058--121280	30	7.5	30	83	5	249	39	2	17	40	1.62

Tables:   1

The End!