Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013157.1 Kokia drynarioides strain JFW-HI SEQ_128176, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9694
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35


Found at i:1430 original size:206 final size:205

Alignment explanation


    Indices: 1145--1745  Score: 914
    Period size: 206  Copynumber: 2.9  Consensus size: 205

       1135 GGGCGTGAGT

                                             *                        *      
       1145 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACTGCATCGTTTGTTTCAACTCACTT
          1 TTGATTTGGTCTTCTTCTCAGTATCTCAT-AGGGAGATGACTGCATCGTTTGTTTCAATTCACTT

              *                 **                                           
       1210 CTTTGTAACTCATCAAGAAGGTGGACTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTT
         65 CTCTGTAACTCATCAAGAAGACGGACTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTT

                                              *                              
       1275 TTATTGCTTTGACCTGCTTCTCAGTGTCTTATCAAGAAGCTGGGGTTCGAAGATTTTGCCCGCTT
        130 TTATTGCTTTGACCTGCTTCTCAGTGTCTTATCAGGAAGCTGGGGTTCGAAGATTTTGCCCGCTT

                       
       1340 TGAGCGTAGGC
        195 TGAGCGTAGGC

                               *    *    *              *                    
       1351 TTGATTTGGTCTTCTTCTCGGTATTTCATTGGGACGATGACTGCGTCGTTTGTTTCAATTCACTT
          1 TTGATTTGGTCTTCTTCTCAGTATCTCATAGGGA-GATGACTGCATCGTTTGTTTCAATTCACTT

                   *         *     * *               *                       
       1416 CTCTGTATCTCATCAAGCAGACGAATTTGGTTCACTTCTCATTATCTCATCAGGAAGCTAACCTT
         65 CTCTGTAACTCATCAAGAAGACGGACTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTT

                     **                   *           *                      
       1481 TTATTGCTTCAACCTGCTTCTCAGTGTCTTGTCAGGAAGCTGAGGTTCGAAGATTTTGCCCGCTT
        130 TTATTGCTTTGACCTGCTTCTCAGTGTCTTATCAGGAAGCTGGGGTTCGAAGATTTTGCCCGCTT

                       
       1546 TGAGCGTAGGC
        195 TGAGCGTAGGC

                                                     *      * *        * *   
       1557 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGGAGATGACCGCATCGCTCGTTTCAATCCGCTT
          1 TTGATTTGGTCTTCTTCTCAGTATCTCAT-AGGGAGATGACTGCATCGTTTGTTTCAATTCACTT

                   *       *                *                                
       1622 CTCTGTACCTCATCAGGAAGACGGACTTGGTTTACTTCTCAGTATCTCATCAGGAAGCTAACCTT
         65 CTCTGTAACTCATCAAGAAGACGGACTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTT

                             * *                                       
       1687 TTATTGCTTTGACCTGCGTATCAGTGTCTTATCAGGAAGCTGGGGTTCGAAGATTTTGC
        130 TTATTGCTTTGACCTGCTTCTCAGTGTCTTATCAGGAAGCTGGGGTTCGAAGATTTTGC

       1746 TCGTTTCGAG


Statistics
Matches: 352,  Mismatches: 41, Indels: 4
        0.89            0.10        0.01

Matches are distributed among these distances:
 205    3  0.01
 206  345  0.98
 207    4  0.01

ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36


Consensus pattern (205 bp):   
TTGATTTGGTCTTCTTCTCAGTATCTCATAGGGAGATGACTGCATCGTTTGTTTCAATTCACTTC
TCTGTAACTCATCAAGAAGACGGACTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTT
TATTGCTTTGACCTGCTTCTCAGTGTCTTATCAGGAAGCTGGGGTTCGAAGATTTTGCCCGCTTT
GAGCGTAGGC
Done.