Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013159.1 Kokia drynarioides strain JFW-HI SEQ_128178, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3052
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.35


Found at i:2624 original size:100 final size:100

Alignment explanation


    Indices: 2446--2653  Score: 380
    Period size: 100  Copynumber: 2.1  Consensus size: 100

       2436 AAAATATAGA

                                                                        *    
       2446 AAAAAAAATATTAAGAGAATCATAAGAACATACAATATGTTAAAATTTTTAAACTAATAACTAAT
          1 AAAAAAAATATTAAGAGAATCATAAGAACATACAATATGTTAAAATTTTTAAACTAATAAATAAT

                                               
       2511 TGATATAAATAAAACACACACATATAATTATTAAT
         66 TGATATAAATAAAACACACACATATAATTATTAAT

                   *                 *                                       
       2546 AAAAAAATTATTAAGAGAATCATAATAACATACAATATGTTAAAATTTTTAAACTAATAAATAAT
          1 AAAAAAAATATTAAGAGAATCATAAGAACATACAATATGTTAAAATTTTTAAACTAATAAATAAT

                    *                          
       2611 TGATATAATTAAAACACACACATATAATTATTAAT
         66 TGATATAAATAAAACACACACATATAATTATTAAT

                    
       2646 AAAAAAAA
          1 AAAAAAAA

       2654 GTAATGTAAT


Statistics
Matches: 103,  Mismatches: 5, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
 100  103  1.00

ACGTcount: A:0.57, C:0.08, G:0.04, T:0.30


Consensus pattern (100 bp):   
AAAAAAAATATTAAGAGAATCATAAGAACATACAATATGTTAAAATTTTTAAACTAATAAATAAT
TGATATAAATAAAACACACACATATAATTATTAAT
Done.