Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013164.1 Kokia drynarioides strain JFW-HI SEQ_128183, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5742
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:2478 original size:22 final size:21

Alignment explanation


    Indices: 2430--2477  Score: 71
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       2420 CTCCCTCAAC

                 *               
       2430 AAAAATTTCAAAATAATTTTA
          1 AAAAAATTCAAAATAATTTTA

                                  
       2451 AAAAAATTCAAAAT-ATTTATA
          1 AAAAAATTCAAAATAATTT-TA

                  
       2472 AAAAAA
          1 AAAAAA

       2478 AAAAAAAAAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  20    4  0.16
  21   21  0.84

ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31


Consensus pattern (21 bp):   
AAAAAATTCAAAATAATTTTA
Done.