genome.fa.s13166.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013166.1 Kokia drynarioides strain JFW-HI SEQ_128185, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90795

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1621--1941	30	10.8	30	76	8	228	34	24	3	38	1.71
1621--1941	59	5.4	58	77	6	270	34	24	3	38	1.71
1633--1961	89	3.7	89	78	4	306	34	23	3	38	1.70
6609--6641	12	2.8	12	90	4	50	81	0	18	0	0.68
7568--8091	50	10.6	49	72	6	281	33	16	30	19	1.94
7568--8075	147	3.4	146	79	3	518	33	15	30	19	1.93
7578--8080	197	2.6	198	78	6	506	33	15	31	19	1.94
7568--8101	99	5.4	99	80	4	497	33	16	30	19	1.94
8102--8172	28	2.4	30	75	13	76	36	21	0	42	1.53
10674--10904	29	7.8	30	79	9	190	36	14	0	47	1.51
10672--10947	59	4.6	57	77	10	223	35	16	1	46	1.55
10790--11001	59	3.6	57	77	10	169	34	20	1	43	1.61
10702--10999	30	10.0	30	74	9	180	34	18	1	44	1.60
15190--15264	30	2.4	32	82	12	86	38	0	5	56	1.22
18919--18985	29	2.3	28	82	10	73	35	2	2	58	1.29
30503--30536	7	4.9	7	88	0	50	26	35	11	26	1.91
31376--31418	13	3.3	13	81	12	61	20	4	4	69	1.25
31376--31434	26	2.3	26	82	8	68	23	5	3	67	1.26
38657--38698	7	6.0	7	100	0	84	0	14	14	71	1.15
39148--39178	14	2.1	14	94	5	53	25	9	0	64	1.24
39512--39561	20	2.3	20	83	10	55	28	26	2	44	1.65
39525--39568	21	2.1	21	83	8	54	22	38	2	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41463--41491	4	7.2	4	100	0	58	24	0	24	51	1.48
41744--41868	63	2.0	63	100	0	250	25	5	25	43	1.76
42904--42999	31	3.2	31	70	19	94	47	12	16	22	1.80
42811--42999	59	3.2	59	80	7	188	47	11	17	23	1.81
43584--43775	96	2.0	96	81	8	221	36	11	20	31	1.89
44129--44441	29	11.0	29	76	12	238	29	3	31	35	1.73
44129--44441	58	5.5	58	80	10	326	29	3	31	35	1.73
44293--44334	20	2.0	20	86	4	57	35	2	30	30	1.71
44263--44374	50	2.2	50	84	3	136	32	2	30	34	1.72
44313--44441	60	2.2	59	85	5	170	30	3	30	36	1.73
45521--45550	9	3.2	9	90	9	51	40	0	0	60	0.97
57550--57626	35	2.2	36	85	2	102	44	10	2	42	1.52
58832--59469	318	2.0	318	99	0	1258	31	13	18	36	1.90
90529--90577	17	2.9	17	84	0	62	51	10	18	20	1.75

Tables:   1

The End!