Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013171.1 Kokia drynarioides strain JFW-HI SEQ_128190, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2730
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.32


Found at i:352 original size:150 final size:150

Alignment explanation


    Indices: 142--444  Score: 525
    Period size: 150  Copynumber: 2.0  Consensus size: 150

        132 CCATTTTGCC

                     *          *                                 *          
        142 TAACACATTGCCTTAAGTTCTCAACATAAATAGTTTATTAAACCTACTAATAAAGAGTAAATGGT
          1 TAACACATTACCTTAAGTTCCCAACATAAATAGTTTATTAAACCTACTAATAAAAAGTAAATGGT

                               *              *                              
        207 TGACTTGACTTGGATCACCTTCAAGACCACACCATTCACACCGACACTAAGAATCTGTAATGGTT
         66 TGACTTGACTTGGATCACCCTCAAGACCACACCACTCACACCGACACTAAGAATCTGTAATGGTT

                                
        272 AAAAAGGGCGTAGGTGAGCT
        131 AAAAAGGGCGTAGGTGAGCT

                           *                                                 
        292 TAACACATTACCTTAGGTTCCCAACATAAATAGTTTATTAAACCTACTAATAAAAAGTAAATGGT
          1 TAACACATTACCTTAAGTTCCCAACATAAATAGTTTATTAAACCTACTAATAAAAAGTAAATGGT

             *                           *                                   
        357 TTACTTGACTTGGATCACCCTCAAGACCATACCACTCACACCGACACTAAGAATCTGTAATGGTT
         66 TGACTTGACTTGGATCACCCTCAAGACCACACCACTCACACCGACACTAAGAATCTGTAATGGTT

                       *        
        422 AAAAAGGGCGTGGGTGAGCT
        131 AAAAAGGGCGTAGGTGAGCT

               
        442 TAA
          1 TAA

        445 AAAGCTTAGT


Statistics
Matches: 144,  Mismatches: 9, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
 150  144  1.00

ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27


Consensus pattern (150 bp):   
TAACACATTACCTTAAGTTCCCAACATAAATAGTTTATTAAACCTACTAATAAAAAGTAAATGGT
TGACTTGACTTGGATCACCCTCAAGACCACACCACTCACACCGACACTAAGAATCTGTAATGGTT
AAAAAGGGCGTAGGTGAGCT

Found at i:2623 original size:3 final size:3

Alignment explanation


    Indices: 2615--2659  Score: 81
    Period size: 3  Copynumber: 15.0  Consensus size: 3

       2605 TGCTAGCTAC

                                                     *                 
       2615 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT AAT AAT AAT AAT
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT

       2660 TTACACTATT


Statistics
Matches: 40,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   40  1.00

ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36


Consensus pattern (3 bp):   
AAT

Done.