Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013172.1 Kokia drynarioides strain JFW-HI SEQ_128191, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114630
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34
Warning! 20 characters in sequence are not A, C, G, or T
Found at i:2154 original size:20 final size:20
Alignment explanation
Indices: 2126--2163 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
2116 GAAATAGTGA
2126 GTCAAGTCGTAAACAGTGGG
1 GTCAAGTCGTAAACAGTGGG
* *
2146 GTCATGTCGTGAACAGTG
1 GTCAAGTCGTAAACAGTG
2164 ATAGTATGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.16, G:0.34, T:0.24
Consensus pattern (20 bp):
GTCAAGTCGTAAACAGTGGG
Found at i:4049 original size:3 final size:3
Alignment explanation
Indices: 4043--4068 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
4033 AAAAAAAAAA
4043 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
4069 AATGAACCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:13239 original size:24 final size:25
Alignment explanation
Indices: 13211--13258 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
13201 TTTATCCCCA
13211 ATAATAATA-AATATTTATTTTTTT
1 ATAATAATATAATATTTATTTTTTT
* **
13235 ATAATATTATTGTATTTATTTTTT
1 ATAATAATATAATATTTATTTTTT
13259 AATGTGTGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (25 bp):
ATAATAATATAATATTTATTTTTTT
Found at i:15039 original size:3 final size:3
Alignment explanation
Indices: 15031--15074 Score: 61
Period size: 3 Copynumber: 14.7 Consensus size: 3
15021 TAATTGATTT
* * *
15031 TTA TTA TTA TTA TTA TTA TTA TTA TTT TTA TTT TTA TTT TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
15075 TATATAATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (3 bp):
TTA
Found at i:30735 original size:17 final size:17
Alignment explanation
Indices: 30713--30767 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
30703 GTAAATATTG
30713 AAATATATATAAATTTA
1 AAATATATATAAATTTA
*
30730 AAATATATAAAAATATTA
1 AAATATATATAAAT-TTA
* *
30748 CTAATTTAT-TAAATTTA
1 -AAATATATATAAATTTA
30765 AAA
1 AAA
30768 AAGTCAATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
16 2 0.06
17 16 0.52
18 7 0.23
19 6 0.19
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATATATATAAATTTA
Found at i:41159 original size:7 final size:7
Alignment explanation
Indices: 41147--41180 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
41137 CTAAACACAG
41147 AAATAAA
1 AAATAAA
41154 AAATAAA
1 AAATAAA
41161 AAATAAA
1 AAATAAA
41168 AAATAAA
1 AAATAAA
41175 AAATAA
1 AAATAA
41181 TACAAGCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAATAAA
Found at i:47198 original size:29 final size:31
Alignment explanation
Indices: 47155--47212 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 31
47145 TTTAATGTGT
*
47155 AATTATATACATG-AACTTTAATT-TGGTGC
1 AATTATACACATGAAACTTTAATTGTGGTGC
* *
47184 AATTATACACGTGAAATTTTAATTGTGGT
1 AATTATACACATGAAACTTTAATTGTGGT
47213 TCAAATGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 11 0.46
30 9 0.38
31 4 0.17
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (31 bp):
AATTATACACATGAAACTTTAATTGTGGTGC
Found at i:47207 original size:30 final size:30
Alignment explanation
Indices: 47171--47239 Score: 75
Period size: 31 Copynumber: 2.3 Consensus size: 30
47161 ATACATGAAC
* *
47171 TTTAATTTGGTGCAATTATACACGTGAAAT
1 TTTAATTTGGTGCAAATATACACGTAAAAT
* * * *
47201 TTTAATTGTGGTTCAAATGTATACTTAAAAT
1 TTTAATT-TGGTGCAAATATACACGTAAAAT
47232 TTTAATTT
1 TTTAATTT
47240 TGATTTAATC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
30 8 0.25
31 24 0.75
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.46
Consensus pattern (30 bp):
TTTAATTTGGTGCAAATATACACGTAAAAT
Found at i:49208 original size:13 final size:13
Alignment explanation
Indices: 49177--49211 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
49167 CATTTTTAAA
*
49177 ATTTTAAATTTTC
1 ATTTAAAATTTTC
49190 -TTTAAAATTTTC
1 ATTTAAAATTTTC
49202 ATTTAAAATT
1 ATTTAAAATT
49212 ATGTTGCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (13 bp):
ATTTAAAATTTTC
Found at i:52275 original size:20 final size:20
Alignment explanation
Indices: 52247--52324 Score: 122
Period size: 20 Copynumber: 3.9 Consensus size: 20
52237 CTTGATGTTA
*
52247 TTTTGTACTGTTTTGATTGC
1 TTTTTTACTGTTTTGATTGC
52267 TTTTTTACTGTTTTGATTGC
1 TTTTTTACTGTTTTGATTGC
52287 TTTTTTACTGTTTTGATGTTG-
1 TTTTTTACTGTTTTGA--TTGC
52308 TTTTTTACTGTTTTGAT
1 TTTTTTACTGTTTTGAT
52325 ATTTTTATTA
Statistics
Matches: 55, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
19 1 0.02
20 35 0.64
21 16 0.29
22 3 0.05
ACGTcount: A:0.10, C:0.08, G:0.17, T:0.65
Consensus pattern (20 bp):
TTTTTTACTGTTTTGATTGC
Found at i:52312 original size:41 final size:40
Alignment explanation
Indices: 52247--52324 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 40
52237 CTTGATGTTA
52247 TTTTGTACTGTTTTGATTGCTTTTTTACTGTTTTGATTGC
1 TTTTGTACTGTTTTGATTGCTTTTTTACTGTTTTGATTGC
*
52287 TTTTTTACTGTTTTGATGTTG-TTTTTTACTGTTTTGAT
1 TTTTGTACTGTTTTGA--TTGCTTTTTTACTGTTTTGAT
52325 ATTTTTATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
40 15 0.43
41 17 0.49
42 3 0.09
ACGTcount: A:0.10, C:0.08, G:0.17, T:0.65
Consensus pattern (40 bp):
TTTTGTACTGTTTTGATTGCTTTTTTACTGTTTTGATTGC
Found at i:52342 original size:41 final size:41
Alignment explanation
Indices: 52267--52353 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 41
52257 TTTTGATTGC
*
52267 TTTTTTACTGTTTTGATTGCTTTTTTACTGTTTT-GATGTTG
1 TTTTTTACTGTTTTGATT-CTTTTTTACTATTTTGGATGTTG
* *
52308 TTTTTTACTGTTTTGATAT-TTTTATTATTATTTTGGTTGTTG
1 TTTTTTACTGTTTTGAT-TCTTTT-TTACTATTTTGGATGTTG
52350 TTTT
1 TTTT
52354 GGTGATATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
40 4 0.10
41 25 0.62
42 11 0.28
ACGTcount: A:0.11, C:0.05, G:0.15, T:0.69
Consensus pattern (41 bp):
TTTTTTACTGTTTTGATTCTTTTTTACTATTTTGGATGTTG
Found at i:52384 original size:35 final size:35
Alignment explanation
Indices: 52321--52388 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 35
52311 TTTACTGTTT
* *
52321 TGATATTTTTATTATTATTTTGGTTGTTGTTTTGG
1 TGATATTTTTATTACTATTTTAGTTGTTGTTTTGG
*
52356 TGATATTTTTTTTTACTATTTTAG-TGTTGTTTT
1 TGATA-TTTTTATTACTATTTTAGTTGTTGTTTT
52389 TACTATTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 14 0.48
36 15 0.52
ACGTcount: A:0.15, C:0.01, G:0.16, T:0.68
Consensus pattern (35 bp):
TGATATTTTTATTACTATTTTAGTTGTTGTTTTGG
Found at i:52410 original size:12 final size:12
Alignment explanation
Indices: 52395--52452 Score: 66
Period size: 12 Copynumber: 4.9 Consensus size: 12
52385 TTTTTACTAT
52395 TATTTTTGTTGC
1 TATTTTTGTTGC
* *
52407 TATTTTTGCTGT
1 TATTTTTGTTGC
52419 TATTTTTGTTG-
1 TATTTTTGTTGC
*
52430 TTTTTTTGTTGC
1 TATTTTTGTTGC
52442 T-TTTGTTGTTG
1 TATTT-TTGTTG
52453 TTTTGGTTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
11 13 0.32
12 27 0.68
ACGTcount: A:0.05, C:0.05, G:0.19, T:0.71
Consensus pattern (12 bp):
TATTTTTGTTGC
Found at i:52435 original size:23 final size:23
Alignment explanation
Indices: 52372--52456 Score: 75
Period size: 23 Copynumber: 3.7 Consensus size: 23
52362 TTTTTTTTAC
* * *
52372 TATTTTAG-TGTTGTTTTTACTAT
1 TATTTTTGTTGTT-TTTTTGCTGT
*
52395 TATTTTTGTTGCTATTTTTGCTGT
1 TATTTTTGTTG-TTTTTTTGCTGT
*
52419 TATTTTTGTTGTTTTTTTGTTGCT
1 TATTTTTGTTGTTTTTTTGCTG-T
*
52443 T-TTGTTGTTGTTTT
1 TATTTTTGTTGTTTT
52457 GGTTGTTATT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
23 28 0.54
24 23 0.44
25 1 0.02
ACGTcount: A:0.08, C:0.05, G:0.16, T:0.71
Consensus pattern (23 bp):
TATTTTTGTTGTTTTTTTGCTGT
Found at i:52436 original size:24 final size:24
Alignment explanation
Indices: 52372--52436 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
52362 TTTTTTTTAC
* *
52372 TATTTTAG-TGTTGTTTTTACTAT
1 TATTTTTGTTGTTATTTTTACTAT
* * *
52395 TATTTTTGTTGCTATTTTTGCTGT
1 TATTTTTGTTGTTATTTTTACTAT
52419 TATTTTTGTTGTT-TTTTT
1 TATTTTTGTTGTTATTTTT
52437 GTTGCTTTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 12 0.34
24 23 0.66
ACGTcount: A:0.11, C:0.05, G:0.14, T:0.71
Consensus pattern (24 bp):
TATTTTTGTTGTTATTTTTACTAT
Found at i:52461 original size:12 final size:11
Alignment explanation
Indices: 52424--52475 Score: 59
Period size: 12 Copynumber: 4.5 Consensus size: 11
52414 GCTGTTATTT
*
52424 TTGTTGTTTTT
1 TTGTTGTTTTG
52435 TTGTTGCTTTTG
1 TTGTTG-TTTTG
52447 TTGTTGTTTTGG
1 TTGTTGTTTT-G
*
52459 TTGTTATTTTG
1 TTGTTGTTTTG
52470 ATTGTT
1 -TTGTT
52476 TGCATATTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
11 11 0.31
12 25 0.69
ACGTcount: A:0.04, C:0.02, G:0.23, T:0.71
Consensus pattern (11 bp):
TTGTTGTTTTG
Found at i:52463 original size:35 final size:35
Alignment explanation
Indices: 52392--52468 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 35
52382 TTGTTTTTAC
*
52392 TATTATTTTTGTTGCTATTTTTGCTGTTATTTTTGT
1 TATT-TTTTTGTTGCTATTTTTGCTGTTATTGTTGT
* *
52428 TGTTTTTTTGTTGCT-TTTGTTGTTGTT-TTGGTTGT
1 TATTTTTTTGTTGCTATTT-TTGCTGTTATT-GTTGT
52463 TATTTT
1 TATTTT
52469 GATTGTTTGC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
34 5 0.14
35 27 0.77
36 3 0.09
ACGTcount: A:0.06, C:0.04, G:0.18, T:0.71
Consensus pattern (35 bp):
TATTTTTTTGTTGCTATTTTTGCTGTTATTGTTGT
Found at i:52624 original size:18 final size:17
Alignment explanation
Indices: 52601--52653 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
52591 AATATAAAAG
52601 AATTTTTAATGTATTTTA
1 AATTTTTAATGT-TTTTA
*
52619 AATTTTAAAT-TTTTTA
1 AATTTTTAATGTTTTTA
*
52635 ATTTTTTTAATGTTTTTA
1 A-ATTTTTAATGTTTTTA
52653 A
1 A
52654 GTGTATTTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 6 0.20
17 8 0.27
18 16 0.53
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (17 bp):
AATTTTTAATGTTTTTA
Found at i:54139 original size:120 final size:120
Alignment explanation
Indices: 53976--54204 Score: 334
Period size: 120 Copynumber: 1.9 Consensus size: 120
53966 ACGCTTGTGG
* * * *
53976 GTCTTGGGGAGAAACAGGGAGCAACTTTGGGAGACCGAAATGGGTAGTCACCTAGACAAAATTTT
1 GTCTTGAGGAGAAACAGAGAGCAACTTTGGGAGACCGAAATGGGCAGACACCTAGACAAAATTTT
* *
54041 CCCGTAACAAG-TGAACATACACGTTCATCTTCAGTGGGCCAAGATATGTGCATGA
66 CCCATAACAAGTTG-ACATACACGTCCATCTTCAGTGGGCCAAGATATGTGCATGA
* * * *
54096 GTCTTGAGGAGAAACATAGAGCAACTTTGGGAGATCGAAATGGGCAGACACCTGGGCAAAATTTT
1 GTCTTGAGGAGAAACAGAGAGCAACTTTGGGAGACCGAAATGGGCAGACACCTAGACAAAATTTT
* *
54161 CCCATAACAAGTTGACATTCACGTCCATCTTTAGTGGGCCAAGA
66 CCCATAACAAGTTGACATACACGTCCATCTTCAGTGGGCCAAGA
54205 CAAGCGCGTG
Statistics
Matches: 96, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
120 94 0.98
121 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.23
Consensus pattern (120 bp):
GTCTTGAGGAGAAACAGAGAGCAACTTTGGGAGACCGAAATGGGCAGACACCTAGACAAAATTTT
CCCATAACAAGTTGACATACACGTCCATCTTCAGTGGGCCAAGATATGTGCATGA
Found at i:54229 original size:120 final size:118
Alignment explanation
Indices: 53944--54231 Score: 328
Period size: 120 Copynumber: 2.4 Consensus size: 118
53934 AACCAATACA
* * *
53944 TCCATCTTTAATGGGCCAGGAAA-CGCTTGTGGGTCTTGGGGAGAAACAGGGAGCAACTTTGGGA
1 TCCATCTTTAGTGGGCCAAGAAAGCGC--GTGGGTCTT-GGGAGAAACAGAGAGCAACTTTGGGA
* * *
54008 GACCGAAATGGGTAGTCACCTAGACAAAATTTTCCCGTAACAAGTGAACATACACG
63 GACCGAAATGGGCAGACACCTAGACAAAATTTTCCCATAACAAGTGAACATACACG
* * * * * * *
54064 TTCATCTTCAGTGGGCCAAGATATGTGCATGAGTCTTGAGGAGAAACATAGAGCAACTTTGGGAG
1 TCCATCTTTAGTGGGCCAAGA-AAGCGCGTGGGTCTTG-GGAGAAACAGAGAGCAACTTTGGGAG
* * * *
54129 ATCGAAATGGGCAGACACCTGGGCAAAATTTTCCCATAACAAGTTG-ACATTCACG
64 ACCGAAATGGGCAGACACCTAGACAAAATTTTCCCATAACAAG-TGAACATACACG
*
54184 TCCATCTTTAGTGGGCCAAGACAAGCGCGTGGGCCTTGGGAAGAAACA
1 TCCATCTTTAGTGGGCCAAGA-AAGCGCGTGGGTCTTGGG-AGAAACA
54232 CAAAGCAATA
Statistics
Matches: 138, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
119 3 0.02
120 130 0.94
121 3 0.02
122 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (118 bp):
TCCATCTTTAGTGGGCCAAGAAAGCGCGTGGGTCTTGGGAGAAACAGAGAGCAACTTTGGGAGAC
CGAAATGGGCAGACACCTAGACAAAATTTTCCCATAACAAGTGAACATACACG
Found at i:59830 original size:18 final size:18
Alignment explanation
Indices: 59807--59843 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
59797 ACAATTTGTA
59807 TCACTTTCAATTTCAATT
1 TCACTTTCAATTTCAATT
*
59825 TCACTTTCACTTTCAATT
1 TCACTTTCAATTTCAATT
59843 T
1 T
59844 TGATCACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.51
Consensus pattern (18 bp):
TCACTTTCAATTTCAATT
Found at i:59832 original size:12 final size:12
Alignment explanation
Indices: 59807--59843 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
59797 ACAATTTGTA
59807 TCACTTTCAATT
1 TCACTTTCAATT
* *
59819 TCAATTTCACTT
1 TCACTTTCAATT
59831 TCACTTTCAATT
1 TCACTTTCAATT
59843 T
1 T
59844 TGATCACAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.51
Consensus pattern (12 bp):
TCACTTTCAATT
Found at i:60623 original size:9 final size:9
Alignment explanation
Indices: 60611--60635 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
60601 CTTCTATTCC
60611 TTCTTTTGT
1 TTCTTTTGT
60620 TTCTTTTGT
1 TTCTTTTGT
60629 TTCTTTT
1 TTCTTTT
60636 CTTTATTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.12, G:0.08, T:0.80
Consensus pattern (9 bp):
TTCTTTTGT
Found at i:61879 original size:21 final size:21
Alignment explanation
Indices: 61850--61891 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
61840 TTAACAATGT
61850 ATTTAGATAAATATTTTTAAA
1 ATTTAGATAAATATTTTTAAA
* *
61871 ATTTTGATATATATTTTTAAA
1 ATTTAGATAAATATTTTTAAA
61892 TATTAATGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (21 bp):
ATTTAGATAAATATTTTTAAA
Found at i:65988 original size:2 final size:2
Alignment explanation
Indices: 65981--66006 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
65971 GAAATATGTG
65981 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
66007 CCTGCATCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:72292 original size:62 final size:62
Alignment explanation
Indices: 72163--72592 Score: 393
Period size: 62 Copynumber: 7.0 Consensus size: 62
72153 TTTTGAATAA
* * *
72163 AAAAATTTTTTGGTGTTGGCCATTGCATGGTCGACACCACTTTTTTATTTGATAAAAAAA-TT
1 AAAATTTTTTTGGTGTTGGCCATTGCATGGTCGACACCA-TCTTTTATCTGATAAAAAAATTT
* * * * * *
72225 -CAATTTTTTTTGTGTTAGCCATTGCATGGTAGACACTATCTTTTATTTGATAAAAAAATTT
1 AAAATTTTTTTGGTGTTGGCCATTGCATGGTCGACACCATCTTTTATCTGATAAAAAAATTT
* * * *
72286 AAAATTTTTTTGGTGTTGGCCATTGCATAGCCGACACCATTTTTTTATCTGATAAAAAAATTC
1 AAAATTTTTTTGGTGTTGGCCATTGCATGGTCGACACCA-TCTTTTATCTGATAAAAAAATTT
* * *
72349 AAAA-TCTTTTGGTGTTGGCCA-TGCATTGG-CTGACACCACCTATTTATCTGATAAAAGAA--T
1 AAAATTTTTTTGGTGTTGGCCATTGCA-TGGTC-GACACCATCT-TTTATCTGATAAAAAAATTT
* * * *
72409 CAAA-TTTTTTGGTGTTGGCCATTGCATAGTCGATACCACCTTTTTATCTGATAAAAAAAATTT
1 AAAATTTTTTTGGTGTTGGCCATTGCATGGTCGACACCATC-TTTTATCTGAT-AAAAAAATTT
** * * * *
72472 AATTTTTTTTTTGTGTTGGCCA-TGCATTGGCCGACACCATCGATTTATCTAAT-AAAAAA--T
1 AAAATTTTTTTGGTGTTGGCCATTGCA-TGGTCGACACCATC-TTTTATCTGATAAAAAAATTT
* * * *
72532 CAAA-TTTTTTCGTGTTGGCTATTGCATGGTCAACACCA-CATTTTTATCTGATAAAAAAATT
1 AAAATTTTTTTGGTGTTGGCCATTGCATGGTCGACACCATC--TTTTATCTGATAAAAAAATT
72593 CATTTTTTTT
Statistics
Matches: 300, Mismatches: 49, Indels: 38
0.78 0.13 0.10
Matches are distributed among these distances:
58 1 0.00
59 34 0.11
60 70 0.23
61 52 0.17
62 78 0.26
63 30 0.10
64 35 0.12
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (62 bp):
AAAATTTTTTTGGTGTTGGCCATTGCATGGTCGACACCATCTTTTATCTGATAAAAAAATTT
Found at i:72321 original size:123 final size:119
Alignment explanation
Indices: 72164--72622 Score: 526
Period size: 123 Copynumber: 3.8 Consensus size: 119
72154 TTTGAATAAA
* *
72164 AAAATTTTTTGGTGTTGGCCATTGCATGGTCGACACCACTTTTTTATTTGATAAAAAAATTCAAT
1 AAAATTTTTTGGTGTTGGCCATTGCATAGTCGACACCACTTTTTTATCTGATAAAAAAATTCAAT
* *
72229 TTTTTTTGTGTTAGCCATTGCA-TGGTAGACACTATCTTTTATTTGATAAAAAAATTT
66 TTTTTTTGTGTTAGCCA-TGCATTGGT-GACACCATCTTTTATCTGATAAAAAAA--T
* *
72286 AAAATTTTTTTGGTGTTGGCCATTGCATAGCCGACACCATTTTTTTATCTGATAAAAAAATTCAA
1 AAAA-TTTTTTGGTGTTGGCCATTGCATAGTCGACACCACTTTTTTATCTGATAAAAAAATTC-A
* * * * * *
72351 AATCTTTTGGTGTTGGCCATGCATTGGCTGACACCACCTATTTATCTGATAAAAGAAT
64 ATTTTTTTTGTGTTAGCCATGCATTGG-TGACACCATCT-TTTATCTGATAAAAAAAT
* * * *
72409 CAAATTTTTTGGTGTTGGCCATTGCATAGTCGATACCACCTTTTTATCTGATAAAAAAAATTTAA
1 AAAATTTTTTGGTGTTGGCCATTGCATAGTCGACACCACTTTTTTATCTGAT-AAAAAAATTCAA
* * * *
72474 TTTTTTTTTTGTGTTGGCCATGCATTGGCCGACACCATCGATTTATCTAAT-AAAAAAT
65 --TTTTTTTTGTGTTAGCCATGCATTGG-TGACACCATC-TTTTATCTGATAAAAAAAT
* * * * * * *
72532 CAAATTTTTTCGTGTTGGCTATTGCATGGTCAACACCACATTTTTATCTGATAAAAAAATTCATT
1 AAAATTTTTTGGTGTTGGCCATTGCATAGTCGACACCACTTTTTTATCTGATAAAAAAATTCA-A
*
72597 TTTTTTTTGTGTTAGCTATGCATTGG
65 TTTTTTTTGTGTTAGCCATGCATTGG
72623 CCGAGCCTGG
Statistics
Matches: 291, Mismatches: 36, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
121 24 0.08
122 60 0.21
123 123 0.42
124 68 0.23
125 16 0.05
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (119 bp):
AAAATTTTTTGGTGTTGGCCATTGCATAGTCGACACCACTTTTTTATCTGATAAAAAAATTCAAT
TTTTTTTGTGTTAGCCATGCATTGGTGACACCATCTTTTATCTGATAAAAAAAT
Found at i:72620 original size:245 final size:244
Alignment explanation
Indices: 72165--72623 Score: 593
Period size: 245 Copynumber: 1.9 Consensus size: 244
72155 TTGAATAAAA
* * *
72165 AAATTTTTTGGTGTTGGCCATTGCATGGTCGACACCACTTTTTTATTTGATAAAAAAATTCAATT
1 AAATTTTTTGGTGTTGGCCATTGCATAGTCGACACCACCTTTTTATCTGATAAAAAAATTCAATT
* * * * *
72230 TTTTTTGTGTTAGCCATTGCATGGTAGACACTATCTTTTATTTGATAAAAAAATTTAAAATTTTT
66 TTTTTTGTGTTAGCCATTGCATGGCAGACACCATCATTTATCTAATAAAAAAA-TTAAAATTTTT
* * **
72295 TTGGTGTTGGCCATTGCATAGCCGACACCATTTTTTTATCTGATAAAAAAATTCAAAATCTTTTG
130 TTCGTGTTGGCCATTGCATAGCCAACACCACATTTTTATCTGATAAAAAAATTCAAAATCTTTTG
*
72360 GTGTTGGCCATGCATTGGCTGACACCACCTATTTATCTGATAAAAGAATC
195 GTGTTAGCCATGCATTGGCTGACACCACCTATTTATCTGATAAAAGAATC
* *
72410 AAATTTTTTGGTGTTGGCCATTGCATAGTCGATACCACCTTTTTATCTGATAAAAAAAATTTAAT
1 AAATTTTTTGGTGTTGGCCATTGCATAGTCGACACCACCTTTTTATCTGAT-AAAAAAATTCAA-
* * *
72475 TTTTTTTTTGTGTTGGCCA-TGCATTGGCCGACACCATCGATTTATCTAAT-AAAAAA-TCAAA-
64 -TTTTTTTTGTGTTAGCCATTGCA-TGGCAGACACCATC-ATTTATCTAATAAAAAAATTAAAAT
* * * *** *
72536 TTTTTTCGTGTTGGCTATTGCATGGTCAACACCACATTTTTATCTGATAAAAAAATTCATTTTTT
126 TTTTTTCGTGTTGGCCATTGCATAGCCAACACCACATTTTTATCTGATAAAAAAATTCAAAATCT
* *
72601 TTTTGTGTTAGCTATGCATTGGC
191 TTTGGTGTTAGCCATGCATTGGC
72624 CGAGCCTGGA
Statistics
Matches: 182, Mismatches: 27, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
245 121 0.66
246 15 0.08
247 4 0.02
248 34 0.19
249 8 0.04
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (244 bp):
AAATTTTTTGGTGTTGGCCATTGCATAGTCGACACCACCTTTTTATCTGATAAAAAAATTCAATT
TTTTTTGTGTTAGCCATTGCATGGCAGACACCATCATTTATCTAATAAAAAAATTAAAATTTTTT
TCGTGTTGGCCATTGCATAGCCAACACCACATTTTTATCTGATAAAAAAATTCAAAATCTTTTGG
TGTTAGCCATGCATTGGCTGACACCACCTATTTATCTGATAAAAGAATC
Found at i:74123 original size:21 final size:22
Alignment explanation
Indices: 74099--74139 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
74089 TCATAATCTA
74099 AAAAATAT-ATTAAAAATTAAT
1 AAAAATATGATTAAAAATTAAT
*
74120 AAAAATATGTTTAAAAATTA
1 AAAAATATGATTAAAAATTA
74140 TTTCCATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (22 bp):
AAAAATATGATTAAAAATTAAT
Found at i:74175 original size:25 final size:24
Alignment explanation
Indices: 74147--74208 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
74137 TTATTTCCAT
*
74147 TTTCTTTCTATTTTTTTTTATC-TTA
1 TTTCTTTCT-TCTTTTTTT-TCATTA
*
74172 TTTCCTTCTTCTTTTTTTTCATTA
1 TTTCTTTCTTCTTTTTTTTCATTA
*
74196 TTCCTTTCTTCTT
1 TTTCTTTCTTCTT
74209 CCTTTTCTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 2 0.06
24 22 0.69
25 8 0.25
ACGTcount: A:0.08, C:0.19, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTCTTTCTTCTTTTTTTTCATTA
Found at i:77247 original size:18 final size:19
Alignment explanation
Indices: 77224--77266 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
77214 TTAGCCATTT
77224 TTTTATTATTT-ATTTTTA
1 TTTTATTATTTCATTTTTA
77242 TTTTATTATTTGCATTTTTA
1 TTTTATTATTT-CATTTTTA
*
77262 ATTTA
1 TTTTA
77267 ATTTTTCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.50
20 11 0.50
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (19 bp):
TTTTATTATTTCATTTTTA
Found at i:77277 original size:14 final size:13
Alignment explanation
Indices: 77256--77287 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
77246 ATTATTTGCA
77256 TTTTTAATTTAAT
1 TTTTTAATTTAAT
77269 TTTTCTAATTTAAT
1 TTTT-TAATTTAAT
77283 TTTTT
1 TTTTT
77288 CCCTTATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTTAATTTAAT
Found at i:83098 original size:14 final size:11
Alignment explanation
Indices: 83060--83100 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
83050 AGTCGAAAAT
83060 AAAAAAA-TGA
1 AAAAAAATTGA
83070 AAAAAAATTGA
1 AAAAAAATTGA
83081 AAAAAGAATTGA
1 AAAAA-AATTGA
83093 GAAAAAAA
1 -AAAAAAA
83101 AAAGACAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.25
11 8 0.29
12 8 0.29
13 5 0.18
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (11 bp):
AAAAAAATTGA
Found at i:92849 original size:53 final size:53
Alignment explanation
Indices: 92781--92893 Score: 136
Period size: 53 Copynumber: 2.1 Consensus size: 53
92771 TTGGATCACT
* * * * * * * *
92781 GGCACAAAGTCTACTAGGCATATAGCTCGAATATATCGGCACGAAGCCTACTA
1 GGCACAAAGCCTACTAGGCAGAAAGCTCGAAAACACCGACACAAAGCCTACTA
* *
92834 GGCACGAAGCCTACTAGGCAGAAAGCTTGAAAACACCGACACAAAGCCTACTA
1 GGCACAAAGCCTACTAGGCAGAAAGCTCGAAAACACCGACACAAAGCCTACTA
92887 GGCACAA
1 GGCACAA
92894 GACCTGAAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.37, C:0.27, G:0.21, T:0.15
Consensus pattern (53 bp):
GGCACAAAGCCTACTAGGCAGAAAGCTCGAAAACACCGACACAAAGCCTACTA
Found at i:92859 original size:16 final size:16
Alignment explanation
Indices: 92818--92853 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
92808 CGAATATATC
92818 GGCACGAAGCCTACTA
1 GGCACGAAGCCTACTA
92834 GGCACGAAGCCTACTA
1 GGCACGAAGCCTACTA
92850 GGCA
1 GGCA
92854 GAAAGCTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.31, C:0.31, G:0.28, T:0.11
Consensus pattern (16 bp):
GGCACGAAGCCTACTA
Found at i:92890 original size:37 final size:37
Alignment explanation
Indices: 92835--92938 Score: 115
Period size: 37 Copynumber: 2.8 Consensus size: 37
92825 AGCCTACTAG
* *
92835 GCACGAAGCCTACTAGGCAGAAAG-CTTGAAAACACCGA
1 GCACAAAGCCTACTAGGCA-AAAGACCTGAAAACA-CGA
* *
92873 -CACAAAGCCTACTAGGCACAAGACCTGAAAACACTA
1 GCACAAAGCCTACTAGGCAAAAGACCTGAAAACACGA
*
92909 GCACAAAGCCTACTAGGTACAAAG-CCTGAA
1 GCACAAAGCCTACTAGGCA-AAAGACCTGAA
92939 TTTGTGTAAG
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
36 5 0.09
37 49 0.86
38 3 0.05
ACGTcount: A:0.41, C:0.28, G:0.19, T:0.12
Consensus pattern (37 bp):
GCACAAAGCCTACTAGGCAAAAGACCTGAAAACACGA
Found at i:93000 original size:23 final size:24
Alignment explanation
Indices: 92969--93022 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
92959 CACAAAGGAT
*
92969 TATACATGTCAACA-AAATCAT-TA
1 TATATATGTCAACACAAAT-ATATA
*
92992 TATATATGTCAACACATATATATA
1 TATATATGTCAACACAAATATATA
93016 TATATAT
1 TATATAT
93023 CAATTCTAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 15 0.56
24 12 0.44
ACGTcount: A:0.46, C:0.13, G:0.04, T:0.37
Consensus pattern (24 bp):
TATATATGTCAACACAAATATATA
Found at i:93976 original size:19 final size:19
Alignment explanation
Indices: 93952--93995 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
93942 CTTATGAGTA
*
93952 TAATTTACTTAATAAAATT
1 TAATTTACTAAATAAAATT
*
93971 TAATTTACTAAATATAATT
1 TAATTTACTAAATAAAATT
*
93990 AAATTT
1 TAATTT
93996 TAAAATCTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (19 bp):
TAATTTACTAAATAAAATT
Found at i:96128 original size:18 final size:20
Alignment explanation
Indices: 96105--96141 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
96095 AATTTTAGAT
96105 TATGCA-ATTAAAT-ATTTA
1 TATGCATATTAAATGATTTA
96123 TATGCATATTAAATGATTT
1 TATGCATATTAAATGATTT
96142 TAATCTTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 7 0.41
20 4 0.24
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (20 bp):
TATGCATATTAAATGATTTA
Found at i:96211 original size:16 final size:16
Alignment explanation
Indices: 96187--96217 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96177 TGATTGCCCC
96187 AATTATAAAAATATTT
1 AATTATAAAAATATTT
*
96203 AATTTTAAAAATATT
1 AATTATAAAAATATT
96218 AAAAAATTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AATTATAAAAATATTT
Found at i:98653 original size:16 final size:16
Alignment explanation
Indices: 98632--98677 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
98622 AAATATATTG
*
98632 TAAATTTATAAAAGA-T
1 TAAATTTA-AAAAAATT
98648 TAAA-TTAAAAAAATT
1 TAAATTTAAAAAAATT
*
98663 TAAATTTAGAAAAAT
1 TAAATTTAAAAAAAT
98678 CATGAACTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 5 0.19
15 8 0.31
16 13 0.50
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (16 bp):
TAAATTTAAAAAAATT
Found at i:103667 original size:29 final size:31
Alignment explanation
Indices: 103606--103674 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
103596 ACTATTTGAT
* *
103606 TTAAATTTTTGAAATCTAAAAAATAGAGTGA
1 TTAAATTTTTGAAATATAAAAAATAGAGAGA
103637 TTAAATTTTTGAAA-ATAAAAATATA-A-AGA
1 TTAAATTTTTGAAATATAAAAA-ATAGAGAGA
*
103666 TTTAATTTT
1 TTAAATTTT
103675 AAATTTATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 10 0.29
30 7 0.21
31 17 0.50
ACGTcount: A:0.49, C:0.01, G:0.09, T:0.41
Consensus pattern (31 bp):
TTAAATTTTTGAAATATAAAAAATAGAGAGA
Found at i:107169 original size:13 final size:13
Alignment explanation
Indices: 107151--107202 Score: 56
Period size: 13 Copynumber: 4.2 Consensus size: 13
107141 ATTTGTGTTT
*
107151 AAAAATTTAATAA
1 AAAAATATAATAA
107164 AAAAATATAAT-A
1 AAAAATATAATAA
*
107176 AAAAATA-AATATT
1 AAAAATATAATA-A
107189 AAAAATA-AATAA
1 AAAAATATAATAA
107201 AA
1 AA
107203 TATGGATTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
11 3 0.09
12 10 0.29
13 21 0.62
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (13 bp):
AAAAATATAATAA
Found at i:107186 original size:24 final size:24
Alignment explanation
Indices: 107150--107202 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
107140 AATTTGTGTT
* *
107150 TAAAAATTTAATA-AAAAAATATAA
1 TAAAAAATAAATATAAAAAATA-AA
*
107174 TAAAAAATAAATATTAAAAATAAA
1 TAAAAAATAAATATAAAAAATAAA
107198 TAAAA
1 TAAAA
107203 TATGGATTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 18 0.72
25 7 0.28
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (24 bp):
TAAAAAATAAATATAAAAAATAAA
Found at i:107200 original size:17 final size:17
Alignment explanation
Indices: 107159--107201 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
107149 TTAAAAATTT
*
107159 AATAAAAAAATATAATA
1 AATAAATAAATATAATA
107176 AA-AAATAAATATTAA-A
1 AATAAATAAATA-TAATA
107192 AATAAATAAA
1 AATAAATAAA
107202 ATATGGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (17 bp):
AATAAATAAATATAATA
Found at i:113558 original size:72 final size:70
Alignment explanation
Indices: 113386--113583 Score: 189
Period size: 72 Copynumber: 2.7 Consensus size: 70
113376 GTGTGCCCCC
** * ** *
113386 AAACAGTATACACACACGATCTGGCACACGCCCATGTGCCCAGCTTGTGTGTCCGCTATAGCTTA
1 AAACAGTATGTACACACGATCTGGCACA--CTCATGTGCCCAGCCCGTGTGTCCACTATAGCTTA
*
113451 TTTTACA
64 TTTTAAA
* ** * * * *
113458 AAACAATATGTACACTTGGTCTGGCACACATCAATGTGCCCAGCCCATGTGTCCACTGTAGTTTA
1 AAACAGTATGTACACACGATCTGGCACAC-TC-ATGTGCCCAGCCCGTGTGTCCACTATAGCTTA
113523 TTTTAAA
64 TTTTAAA
** *
113530 AAACAGTATGTACACACGATCTAACACACTCCTGTGAACCCAGCCCGTGTGTCC
1 AAACAGTATGTACACACGATCTGGCACACTCATGTG--CCCAGCCCGTGTGTCC
113584 TTTTGTAACT
Statistics
Matches: 100, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
70 5 0.05
71 3 0.03
72 92 0.92
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (70 bp):
AAACAGTATGTACACACGATCTGGCACACTCATGTGCCCAGCCCGTGTGTCCACTATAGCTTATT
TTAAA
Done.