Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013174.1 Kokia drynarioides strain JFW-HI SEQ_128193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 308382
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Warning! 268 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:3327 original size:16 final size:17
Alignment explanation
Indices: 3296--3329 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
3286 AATCACGACA
3296 TCCACATATGTTAAGTT
1 TCCACATATGTTAAGTT
*
3313 TCCATATAT-TTAAGTT
1 TCCACATATGTTAAGTT
3329 T
1 T
3330 TTATTATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.29, C:0.15, G:0.09, T:0.47
Consensus pattern (17 bp):
TCCACATATGTTAAGTT
Found at i:4216 original size:2 final size:2
Alignment explanation
Indices: 4202--4239 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
4192 ACCCAGAAAC
*
4202 AG AG AG A- AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
4240 ATCATTAACC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (2 bp):
AG
Found at i:9732 original size:24 final size:25
Alignment explanation
Indices: 9705--9782 Score: 88
Period size: 28 Copynumber: 3.0 Consensus size: 25
9695 AATTTTATAT
9705 TATA-TTA-TTTTTAATAATTTAAAA
1 TATATTTATTTTTTAAT-ATTTAAAA
*
9729 TATATTTATTTTTGTAATATATAATAAA
1 TATATTTATTTTT-TAATAT-TTA-AAA
9757 TATATTTATTTTTTAATTATTTAAAA
1 TATATTTATTTTTTAA-TATTTAAAA
9783 CCTGATTTAG
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
24 4 0.09
25 3 0.07
26 9 0.20
27 11 0.24
28 19 0.41
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (25 bp):
TATATTTATTTTTTAATATTTAAAA
Found at i:9738 original size:28 final size:26
Alignment explanation
Indices: 9700--9782 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 26
9690 ATAAAAATTT
9700 TATATTATATTATTTTTAATAATTTAAAA
1 TATATT-TATT-TTTTTAAT-ATTTAAAA
* *
9729 TATATTTATTTTTGTAATATATAATAAA
1 TATATTTATTTTTTTAATAT-TTA-AAA
9757 TATATTTA-TTTTTTAATTATTTAAAA
1 TATATTTATTTTTTTAA-TATTTAAAA
9783 CCTGATTTAG
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
26 5 0.11
27 18 0.38
28 18 0.38
29 6 0.13
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (26 bp):
TATATTTATTTTTTTAATATTTAAAA
Found at i:12803 original size:16 final size:18
Alignment explanation
Indices: 12779--12811 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
12769 TATAATAATT
12779 AAAGTATATA-TTTAAAA
1 AAAGTATATAGTTTAAAA
12796 AAAG-ATATAGTTTAAA
1 AAAGTATATAGTTTAAA
12812 TTTCAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (18 bp):
AAAGTATATAGTTTAAAA
Found at i:15170 original size:28 final size:27
Alignment explanation
Indices: 15126--15183 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
15116 AAAGTTTTAG
15126 GGGTAAAAATATCATTTTGGGAAAGTTC
1 GGGTAAAAATATCATTTTGGG-AAGTTC
* * *
15154 GGGTAAAAATGTGATTTTTGGAAGTTC
1 GGGTAAAAATATCATTTTGGGAAGTTC
15181 GGG
1 GGG
15184 GGAAAAAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 9 0.33
28 18 0.67
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (27 bp):
GGGTAAAAATATCATTTTGGGAAGTTC
Found at i:15189 original size:28 final size:27
Alignment explanation
Indices: 15101--15232 Score: 95
Period size: 30 Copynumber: 4.5 Consensus size: 27
15091 GTTTAAGGTT
* *
15101 AAAATGTAATTTTGGAAAGTTTTAGGGGTA
1 AAAATGTATTTTTGG-AAG--TTCGGGGTA
* *
15131 AAAATATCATTTTGGGAAAGTTC-GGGTA
1 AAAATGT-ATTTTTGG-AAGTTCGGGGTA
*
15159 AAAATGTGATTTTTGGAAGTTCGGGGGAA
1 AAAATGT-ATTTTTGGAAGTTC-GGGGTA
*
15188 AAAATGTATTTTTTTGGAAGTTCAGGGGCA
1 AAAATGTA--TTTTTGGAAGTTC-GGGGTA
*
15218 AAAATATACTTTTTG
1 AAAATGTA-TTTTTG
15233 AAAAGTTTAA
Statistics
Matches: 85, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
27 6 0.07
28 19 0.22
29 19 0.22
30 31 0.36
31 10 0.12
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.36
Consensus pattern (27 bp):
AAAATGTATTTTTGGAAGTTCGGGGTA
Found at i:16396 original size:6 final size:6
Alignment explanation
Indices: 16385--16431 Score: 62
Period size: 6 Copynumber: 8.2 Consensus size: 6
16375 AATTTTGGAC
* *
16385 ATTTAA ATTTAA ATTTAA A-ATAA ATTTAA ACTTAA A-TTAA ATTTAA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
16431 A
1 A
16432 AAAGGGTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
5 9 0.25
6 27 0.75
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (6 bp):
ATTTAA
Found at i:16410 original size:17 final size:17
Alignment explanation
Indices: 16388--16431 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
16378 TTTGGACATT
*
16388 TAAATTTAAATTTAAAA
1 TAAATTTAAACTTAAAA
*
16405 TAAATTTAAACTTAAAT
1 TAAATTTAAACTTAAAA
16422 TAAATTTAAA
1 TAAATTTAAA
16432 AAAGGGTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAATTTAAACTTAAAA
Found at i:16424 original size:11 final size:12
Alignment explanation
Indices: 16385--16431 Score: 62
Period size: 11 Copynumber: 4.1 Consensus size: 12
16375 AATTTTGGAC
16385 ATTTAAATTTAA
1 ATTTAAATTTAA
*
16397 ATTTAAA-ATAA
1 ATTTAAATTTAA
*
16408 ATTTAAACTTAA
1 ATTTAAATTTAA
16420 A-TTAAATTTAA
1 ATTTAAATTTAA
16431 A
1 A
16432 AAAGGGTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
11 20 0.65
12 11 0.35
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
ATTTAAATTTAA
Found at i:17039 original size:39 final size:39
Alignment explanation
Indices: 16996--17955 Score: 491
Period size: 39 Copynumber: 24.7 Consensus size: 39
16986 AATTGCTACA
*
16996 ATCTGCCCCAGGCTCGGGGTAAGGGATTGGCTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
** * ** * * * * ***
17035 ATCTGCCTTAAGCTTAGAGTAAAAGATCGGATGACT-ACA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGA-TGGTG
* * * *
17074 ATCTGCCTCAGGCTCGAGCTAAGAGATTGGTTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
* * **
17113 ATCT-ACCTAGGCTCGGGGTAAGAGA-T--CAAATGGCTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGG-TG
* * * *
17149 TAATTTACCTCAGGCTCGGGGTAAGAGATTAGCTGATGGTG
1 --ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
* * *
17190 ATCTACCCTAGGCTTGGGGTAAGAGATTGGCTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
* * * **
17229 ATCTACCCCAGACTTGGGGTAAGAGA-T--CAAATGGTTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGG-TG
* * * * * * *
17266 CAATTTGCCCTAGGCTCGGGATAAGAAATTGGTTAATGGTA
1 --ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
* * * *** **
17307 ATTTACCCCAGACTCGGGGTAAGAGATTAAATGACT-GCA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGA-TGGTG
* *
17346 ATTTGCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
* **
17385 ATCTGCCCCAAGCTCGGGGTAAGAGA-T--CAAATGGCTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGG-TG
* *
17422 TAATTTGTCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
1 --ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
* * **
17463 ATCTGCCCCAAGCTCAGGGTAAGAGA-T--CAAATGGCTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGG-TG
* *
17500 CAATCTGTCCCAGGCTCGGGGTAAGAGATTGGTTGATGGTG
1 --ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
* * * ** *
17541 ATTTGCCCTAAGCTCGGGGTAAGAGA-T--CAAATGGCTACA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGG-T--G
* * * * * * *
17580 ATCTGCCTCAGGCTCAGGGTAAAAGATCGGATGGCT-GTA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCT-GATGGTG
* * * *
17619 ATATGCCCCAAGCTCGGGGTAAGAGATTGGTTTATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
* * *
17658 ATTTG-CCCAAGCTCGGGGTAAGAGATTGGTTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
* * * **
17696 ATCTGTCTCAAGCTCGGGGTAAGAGA-T--CAAATGGCTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGG-TG
** * *
17733 TAATCTG-CCCAGGCTCGGGAAAAGAGATTGGTTGATGATG
1 --ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
* * **** * *
17773 ATCT-CTCCCAAGCTCAGGGTAAGAGATCAAATGATTGTA
1 ATCTGC-CCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
* * *
17812 ATCTGCCCCAAGTTCTGGGTAAGAGATTGGCTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
* * ** *
17851 ATTTACCCCAGGCTCGGGGTAAGAGA-T--CAAATGACTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATG-GTG
* * *
17888 CATTCTGCCCCAAGCTCGAGGTAAGAGATTGACTGATGGTG
1 -A-TCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
* * *
17929 ATCTGCCCCAAGCTCAGGGTAAAAGAT
1 ATCTGCCCCAGGCTCGGGGTAAGAGAT
17956 CGGATGGCTG
Statistics
Matches: 688, Mismatches: 180, Indels: 106
0.71 0.18 0.11
Matches are distributed among these distances:
35 4 0.01
36 29 0.04
37 12 0.02
38 85 0.12
39 509 0.74
40 11 0.02
41 13 0.02
42 24 0.03
43 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (39 bp):
ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTG
Found at i:17048 original size:78 final size:77
Alignment explanation
Indices: 16916--17216 Score: 284
Period size: 78 Copynumber: 3.9 Consensus size: 77
16906 TAGATGGTTG
* * * * * *
16916 CAATCTACCTTAGACTCGGGGTAAGAGATTGGTTTATGGTGATCTGTCGC-AAGCTCGAGGTAAG
1 CAATCTGCCTCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCT-AC-CTAAGCTCGAGGTAAG
16980 AGATCAAATTGCTA
64 AGATCAAATTGCTA
* * * * *
16994 CAATCTGCCCCAGGCTCGGGGTAAGGGATTGGCTGATGGTGATCTGCCTTAAGCT-TAGAGTAAA
1 CAATCTGCCTCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTACC-TAAGCTCGAG-GTAAG
**
17058 AGATCGGA-TGACTA
64 AGATCAAATTG-CTA
* * * * *
17072 CAATCTGCCTCAGGCTCGAGCTAAGAGATTGGTTGATGGTGATCTACCTAGGCTCGGGGTAAGAG
1 CAATCTGCCTCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTACCTAAGCTCGAGGTAAGAG
* *
17137 ATCAAATGGCTG
66 ATCAAATTGCTA
* * * * * * *
17149 TAATTTACCTCAGGCTCGGGGTAAGAGATTAGCTGATGGTGATCTACCCTAGGCTTGGGGTAAGA
1 CAATCTGCCTCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTA-CCTAAGCTCGAGGTAAGA
17214 GAT
65 GAT
17217 TGGCTGATGG
Statistics
Matches: 182, Mismatches: 34, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
76 1 0.01
77 61 0.34
78 120 0.66
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (77 bp):
CAATCTGCCTCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTACCTAAGCTCGAGGTAAGAG
ATCAAATTGCTA
Found at i:17255 original size:155 final size:156
Alignment explanation
Indices: 16916--17204 Score: 375
Period size: 155 Copynumber: 1.9 Consensus size: 156
16906 TAGATGGTTG
* * *
16916 CAATCTACCTTAGACTCGGGGTAAGAGATTGGTTTATGGTGATCTGTCGCAAGCTCGAGGTAAGA
1 CAATCTACCTCAGACTCGGGGTAAGAGATTGGTTGATGGTGATCTGACGCAAGCTCGAGGTAAGA
* * * * * *
16981 GATCAAATTGCTACAATCTGCCCCAGGCTCGGGGTAAGGGATTGGCTGATGGTGATCTGCCTTAA
66 GATCAAATGGCTACAATCTACCCCAGGCTCGGGGTAAGAGATTAGCTGATGGTGATCTACCCTAA
17046 GCTTAGAGTAAAAGATCGGATGACTA
131 GCTTAGAGTAAAAGATCGGATGACTA
* * * * * *
17072 CAATCTGCCTCAGGCTCGAGCTAAGAGATTGGTTGATGGTGATCT-AC-CTAGGCTCGGGGTAAG
1 CAATCTACCTCAGACTCGGGGTAAGAGATTGGTTGATGGTGATCTGACGC-AAGCTCGAGGTAAG
** * *
17135 AGATCAAATGGCTGTAATTTACCTCAGGCTCGGGGTAAGAGATTAGCTGATGGTGATCTACCCTA
65 AGATCAAATGGCTACAATCTACCCCAGGCTCGGGGTAAGAGATTAGCTGATGGTGATCTACCCTA
*
17200 GGCTT
130 AGCTT
17205 GGGGTAAGAG
Statistics
Matches: 112, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
154 1 0.01
155 72 0.64
156 39 0.35
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (156 bp):
CAATCTACCTCAGACTCGGGGTAAGAGATTGGTTGATGGTGATCTGACGCAAGCTCGAGGTAAGA
GATCAAATGGCTACAATCTACCCCAGGCTCGGGGTAAGAGATTAGCTGATGGTGATCTACCCTAA
GCTTAGAGTAAAAGATCGGATGACTA
Found at i:17816 original size:116 final size:116
Alignment explanation
Indices: 17123--17994 Score: 546
Period size: 117 Copynumber: 7.5 Consensus size: 116
17113 ATCTACCTAG
* * * * * *
17123 GCTCGGGGTAAGAGATCAAATGGCTGTAATTTACCTCAGGCTCGGGGTAAGAGATTAGCTGATGG
1 GCTCAGGGTAAGAGATCAAATGGCTGTAATCTGCCCCAGGCTCGGGGTAAGAGATTGGTTGATGG
* * * * **** * * * *
17188 TGATCTACCCTAGGCTTGGGGTAAGAGATTGGCTGATGGTGATCTACC-CCA
66 TGATTTGCCC-AAGCTCGGGGTAAGAGATCAAATGATTGTAATCTGCCTCAA
** * * * * * * *
17239 GACTTGGGGTAAGAGATCAAATGGTTGCAATTTGCCCTAGGCTCGGGATAAGAAATTGGTTAATG
1 G-CTCAGGGTAAGAGATCAAATGGCTGTAATCTGCCCCAGGCTCGGGGTAAGAGATTGGTTGATG
* * * * * * * *
17304 GTAATTTACCCCAGACTCGGGGTAAGAGATTAAATGACTGCAATTTGCC-CTAG
65 GTGATTTGCCCAAG-CTCGGGGTAAGAGATCAAATGATTGTAATCTGCCTC-AA
* ** * *** *
17357 GCTCGGGGTAAGAGATTGGCTGATGG-TG--ATCTGCCCCAAGCTCGGGGTAAGAGATCAAATGG
1 GCTCAGGGTAAGAGA-T--CAAATGGCTGTAATCTGCCCCAGGCTCGGGGTAAGAGAT-TGGTTG
* * * **** * * *
17419 CT-GTAATTTGTCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAA
62 ATGGTGATTTG-CCCAAGCTCGGGGTAAGAGATCAAATGATTGTAATCTGCCTCAA
* *
17474 GCTCAGGGTAAGAGATCAAATGGCTGCAATCTGTCCCAGGCTCGGGGTAAGAGATTGGTTGATGG
1 GCTCAGGGTAAGAGATCAAATGGCTGTAATCTGCCCCAGGCTCGGGGTAAGAGATTGGTTGATGG
** ** *
17539 TGATTTGCCCTAAGCTCGGGGTAAGAGATCAAATGGCTACAATCTGCCTCAG
66 TGATTTGCCC-AAGCTCGGGGTAAGAGATCAAATGATTGTAATCTGCCTCAA
* ** * * *
17591 GCTCAGGGTAAAAGATCGGATGGCTGTAATATGCCCCAAGCTCGGGGTAAGAGATTGGTTTATGG
1 GCTCAGGGTAAGAGATCAAATGGCTGTAATCTGCCCCAGGCTCGGGGTAAGAGATTGGTTGATGG
**** * * *
17656 TGATTTGCCCAAGCTCGGGGTAAGAGATTGGTTGATGGTGATCTGTCTCAA
66 TGATTTGCCCAAGCTCGGGGTAAGAGATCAAATGATTGTAATCTGCCTCAA
* ** *
17707 GCTCGGGGTAAGAGATCAAATGGCTGTAATCTG-CCCAGGCTCGGGAAAAGAGATTGGTTGATGA
1 GCTCAGGGTAAGAGATCAAATGGCTGTAATCTGCCCCAGGCTCGGGGTAAGAGATTGGTTGATGG
* *
17771 TGATCTCT-CCCAAGCTCAGGGTAAGAGATCAAATGATTGTAATCTGCCCCAA
66 TGAT-T-TGCCCAAGCTCGGGGTAAGAGATCAAATGATTGTAATCTGCCTCAA
* * ** * * ****
17823 GTTCTGGGTAAGAGATTGGCTGATGG-TG--ATTTACCCCAGGCTCGGGGTAAGAGATCAAATGA
1 GCTCAGGGTAAGAGA-T--CAAATGGCTGTAATCTGCCCCAGGCTCGGGGTAAGAGATTGGTTGA
* * ** * * * *
17885 CT-G-CATTCTGCCCCAAGCTCGAGGTAAGAGATTGACTGATGGTGATCTGCCCCAA
63 -TGGTGATT-TG-CCCAAGCTCGGGGTAAGAGATCAAATGATTGTAATCTGCCTCAA
* ** * * * * *
17940 GCTCAGGGTAAAAGATCGGATGGCTGTGATCTGCCCTATGATTGGGGTAAGAGAT
1 GCTCAGGGTAAGAGATCAAATGGCTGTAATCTGCCCCAGGCTCGGGGTAAGAGAT
17995 CGAAATCTTC
Statistics
Matches: 583, Mismatches: 147, Indels: 51
0.75 0.19 0.07
Matches are distributed among these distances:
114 11 0.02
115 37 0.06
116 121 0.21
117 390 0.67
118 12 0.02
119 7 0.01
120 5 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (116 bp):
GCTCAGGGTAAGAGATCAAATGGCTGTAATCTGCCCCAGGCTCGGGGTAAGAGATTGGTTGATGG
TGATTTGCCCAAGCTCGGGGTAAGAGATCAAATGATTGTAATCTGCCTCAA
Found at i:17973 original size:78 final size:78
Alignment explanation
Indices: 17190--17994 Score: 809
Period size: 78 Copynumber: 10.3 Consensus size: 78
17180 GCTGATGGTG
* * * * *
17190 ATCTACCCTAGGCTTGGGGTAAGAGATTGGCTGATGGTGATCTACCCC-AGACTTGGGGTAAGAG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAG-CTCGGGGTAAGAG
* *
17254 ATCAAATGGTTGCA
65 ATCAAATGGCTGTA
* * * * * * * * *
17268 ATTTGCCCTAGGCTCGGGATAAGAAATTGGTTAATGGTAATTTACCCC-AGACTCGGGGTAAGAG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAG-CTCGGGGTAAGAG
* * *
17332 ATTAAATGACTGCA
65 ATCAAATGGCTGTA
* *
17346 ATTTGCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGA
17411 TCAAATGGCTGTA
66 TCAAATGGCTGTA
* * *
17424 ATTTGTCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCAGGGTAAGAGA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGA
*
17489 TCAAATGGCTGCA
66 TCAAATGGCTGTA
* * * *
17502 ATCTGTCCCAGGCTCGGGGTAAGAGATTGGTTGATGGTGATTTGCCCTAAGCTCGGGGTAAGAGA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGA
**
17567 TCAAATGGCTACA
66 TCAAATGGCTGTA
* * * * * * * *
17580 ATCTGCCTCAGGCTCAGGGTAAAAGATCGGATGGCT-GTAATATGCCCCAAGCTCGGGGTAAGAG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCT-GATGGTGATCTGCCCCAAGCTCGGGGTAAGAG
***
17644 ATTGGTTTATGG-TG--
65 A-T--CAAATGGCTGTA
* * * * *
17658 ATTTG-CCCAAGCTCGGGGTAAGAGATTGGTTGATGGTGATCTGTCTCAAGCTCGGGGTAAGAGA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGA
17722 TCAAATGGCTGTA
66 TCAAATGGCTGTA
** * * *
17735 ATCTG-CCCAGGCTCGGGAAAAGAGATTGGTTGATGATGATCT-CTCCCAAGCTCAGGGTAAGAG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGC-CCCAAGCTCGGGGTAAGAG
**
17798 ATCAAATGATTGTA
65 ATCAAATGGCTGTA
* * * * * *
17812 ATCTGCCCCAAGTTCTGGGTAAGAGATTGGCTGATGGTGATTTACCCCAGGCTCGGGGTAAGAGA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGA
* *
17877 TCAAATGACTGCA
66 TCAAATGGCTGTA
* * * * * *
17890 TTCTGCCCCAAGCTCGAGGTAAGAGATTGACTGATGGTGATCTGCCCCAAGCTCAGGGTAAAAGA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGA
** *
17955 TCGGATGGCTGTG
66 TCAAATGGCTGTA
* * * *
17968 ATCTGCCCTATGATTGGGGTAAGAGAT
1 ATCTGCCCCAGGCTCGGGGTAAGAGAT
17995 CGAAATCTTC
Statistics
Matches: 610, Mismatches: 105, Indels: 24
0.83 0.14 0.03
Matches are distributed among these distances:
74 4 0.01
75 2 0.00
76 3 0.00
77 116 0.19
78 474 0.78
79 6 0.01
80 1 0.00
81 4 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (78 bp):
ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGA
TCAAATGGCTGTA
Found at i:29821 original size:30 final size:30
Alignment explanation
Indices: 29781--30108 Score: 177
Period size: 29 Copynumber: 11.1 Consensus size: 30
29771 CGAAGAGTTT
*
29781 GGGGTTAAAATGTAATTTTGGAAAGTTTTA
1 GGGGTAAAAATGTAATTTTGGAAAGTTTTA
* * *
29811 GGGATAAAAATGTCATTTTGGGAAAG--TTC
1 GGGGTAAAAATGTAATTTT-GGAAAGTTTTA
* *
29840 GGGGT-AAAACGTAATTTTGAAAAGTTTTA
1 GGGGTAAAAATGTAATTTTGGAAAGTTTTA
* *
29869 GGGGTAAAAATGTCATTTTTGGGAAAG--TTC
1 GGGGTAAAAATGT-AATTTT-GGAAAGTTTTA
* ** *
29899 GTGGT-AAAATG-AGATTTTTAAAAG--TTC
1 GGGGTAAAAATGTA-ATTTTGGAAAGTTTTA
** *
29926 GGGGGCAAAATGTAATTTTTGG-AAG-TTCA
1 GGGGTAAAAATGTAA-TTTTGGAAAGTTTTA
* *
29955 AGGGTCAAAATGTAATTTTTTGG-AAG-TTTA
1 GGGGTAAAAATGTAA--TTTTGGAAAGTTTTA
* * *
29985 AGGGTTAAAATGTAATTTTTGG-AAG-TTCA
1 GGGGTAAAAATGTAA-TTTTGGAAAGTTTTA
* * *
30014 AGGGTAAAAATGTATTTTTTTGAAAAG-TTTA
1 GGGGTAAAAATGTA--ATTTTGGAAAGTTTTA
* *
30045 GGGGGTTAAAATGTAATTTT-GAAAGGTTTA
1 -GGGGTAAAAATGTAATTTTGGAAAGTTTTA
* * *
30075 GGGGTTAAAATGTAATTTTAGAAAAGTTTAA
1 GGGGTAAAAATGTAATTTT-GGAAAGTTTTA
30106 GGG
1 GGG
30109 TCAAAATATG
Statistics
Matches: 240, Mismatches: 39, Indels: 37
0.76 0.12 0.12
Matches are distributed among these distances:
27 16 0.07
28 25 0.10
29 87 0.36
30 68 0.28
31 27 0.11
32 17 0.07
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (30 bp):
GGGGTAAAAATGTAATTTTGGAAAGTTTTA
Found at i:29844 original size:59 final size:59
Alignment explanation
Indices: 29776--30108 Score: 258
Period size: 59 Copynumber: 5.6 Consensus size: 59
29766 AGTTTCGAAG
* * * *
29776 AGTTTGGGGTTAAAATGTAATTTTGGAAAGTTTTAGGGATAAAAATGTCATTTTGGGAA
1 AGTTCGGGGTTAAAATGTAATTTTGAAAAGTTTTAGGGGTAAAAATGTAATTTTGGGAA
* *
29835 AGTTCGGGG-TAAAACGTAATTTTGAAAAGTTTTAGGGGTAAAAATGTCATTTTTGGGAA
1 AGTTCGGGGTTAAAATGTAATTTTGAAAAGTTTTAGGGGTAAAAATGT-AATTTTGGGAA
* * * ** *
29894 AGTTCGTGG-TAAAATG-AGATTTTTAAAAG--TTCGGGGGCAAAATGTAATTTTTGG-A
1 AGTTCGGGGTTAAAATGTA-ATTTTGAAAAGTTTTAGGGGTAAAAATGTAATTTTGGGAA
* * * * * *
29949 AGTTCAAGGGTCAAAATGTAATTTTTTG-GAAG-TTTAAGGGTTAAAATGTAATTTTTGG-A
1 AGTTC-GGGGTTAAAATGTAA--TTTTGAAAAGTTTTAGGGGTAAAAATGTAATTTTGGGAA
* * * *
30008 AGTTCAAGGGTAAAAATGTATTTTTTTGAAAAG-TTTAGGGGGTTAAAATGTAATTTT--GAA
1 AGTTC-GGGGTTAAAATGTA--ATTTTGAAAAGTTTTA-GGGGTAAAAATGTAATTTTGGGAA
* *
30068 AGGTTTAGGGGTTAAAATGTAATTTTAGAAAAGTTTAAGGG
1 A-G-TTCGGGGTTAAAATGTAATTTT-GAAAAGTTTTAGGG
30109 TCAAAATATG
Statistics
Matches: 225, Mismatches: 32, Indels: 33
0.78 0.11 0.11
Matches are distributed among these distances:
55 6 0.03
56 9 0.04
57 20 0.09
58 40 0.18
59 96 0.43
60 18 0.08
61 34 0.15
62 2 0.01
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (59 bp):
AGTTCGGGGTTAAAATGTAATTTTGAAAAGTTTTAGGGGTAAAAATGTAATTTTGGGAA
Found at i:30115 original size:30 final size:29
Alignment explanation
Indices: 29782--30115 Score: 193
Period size: 30 Copynumber: 11.3 Consensus size: 29
29772 GAAGAGTTTG
* *
29782 GGGTTAAAATGTAATTTTGGAAAGTTTTA
1 GGGTTAAAATGTAATTTTGAAAAGTTTAA
* * * *
29811 GGGATAAAAATGTCATTTTGGGAAAG-TT-C
1 GGG-TTAAAATGTAATTTT-GAAAAGTTTAA
* * *
29840 GGGGTAAAACGTAATTTTGAAAAGTTTTAG
1 GGGTTAAAATGTAATTTTGAAAAG-TTTAA
* * * *
29870 GGGTAAAAATGTCATTTTTGGGAAAG-TT-C
1 GGGTTAAAATGT-AATTTT-GAAAAGTTTAA
* **
29899 GTGG-TAAAATG-AGATTTTTAAAAG-TTCG
1 G-GGTTAAAATGTA-ATTTTGAAAAGTTTAA
** * *
29927 GGGGCAAAATGTAATTTTTG-GAAGTTCAA
1 GGGTTAAAATGTAA-TTTTGAAAAGTTTAA
* *
29956 GGGTCAAAATGTAATTTTTTG-GAAGTTTAA
1 GGGTTAAAATGTAA--TTTTGAAAAGTTTAA
* *
29986 GGGTTAAAATGTAATTTTTG-GAAGTTCAA
1 GGGTTAAAATGTAA-TTTTGAAAAGTTTAA
* * *
30015 GGGTAAAAATGTATTTTTTTGAAAAGTTTAGG
1 GGGTTAAAATGTA--ATTTTGAAAAGTTTA-A
* *
30047 GGGTTAAAATGTAATTTTGAAAGGTTTAG
1 GGGTTAAAATGTAATTTTGAAAAGTTTAA
30076 GGGTTAAAATGTAATTTTAGAAAAGTTTAA
1 GGGTTAAAATGTAATTTT-GAAAAGTTTAA
*
30106 GGGTCAAAAT
1 GGGTTAAAAT
30116 ATGATTTCTA
Statistics
Matches: 244, Mismatches: 41, Indels: 39
0.75 0.13 0.12
Matches are distributed among these distances:
27 14 0.06
28 26 0.11
29 79 0.32
30 91 0.37
31 17 0.07
32 17 0.07
ACGTcount: A:0.35, C:0.03, G:0.25, T:0.36
Consensus pattern (29 bp):
GGGTTAAAATGTAATTTTGAAAAGTTTAA
Found at i:31420 original size:11 final size:12
Alignment explanation
Indices: 31404--31435 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
31394 TATCTCTTTA
31404 ATATTTATTA-T
1 ATATTTATTACT
31415 ATATTTATTACT
1 ATATTTATTACT
31427 -TATTTATTA
1 ATATTTATTA
31436 AATACTGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 19 0.95
12 1 0.05
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (12 bp):
ATATTTATTACT
Found at i:32046 original size:6 final size:6
Alignment explanation
Indices: 32035--32099 Score: 64
Period size: 6 Copynumber: 11.2 Consensus size: 6
32025 AATTTTGGAC
**
32035 ATTTAA ATTTAA ATTTAGA A--TAA ATTTAA ATTTAA AAATAA ATTTAA
1 ATTTAA ATTTAA ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
* *
32082 ACTTAA A-ATAA ATTTAA A
1 ATTTAA ATTTAA ATTTAA A
32100 AATGGGTTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
4 2 0.04
5 6 0.12
6 38 0.79
7 2 0.04
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (6 bp):
ATTTAA
Found at i:32060 original size:17 final size:17
Alignment explanation
Indices: 32038--32099 Score: 97
Period size: 17 Copynumber: 3.6 Consensus size: 17
32028 TTTGGACATT
*
32038 TAAATTTAAATTTAGAA
1 TAAATTTAAATTTAAAA
32055 TAAATTTAAATTTAAAAA
1 TAAATTTAAATTT-AAAA
*
32073 TAAATTTAAACTTAAAA
1 TAAATTTAAATTTAAAA
32090 TAAATTTAAA
1 TAAATTTAAA
32100 AATGGGTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
17 27 0.64
18 15 0.36
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:40094 original size:8 final size:8
Alignment explanation
Indices: 40081--40111 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
40071 TCATGTTTTT
40081 TTTTTTAA
1 TTTTTTAA
40089 TTTTTTAA
1 TTTTTTAA
40097 TTTTTTGAA
1 TTTTTT-AA
40106 TTTTTT
1 TTTTTT
40112 TTATAAATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 14 0.64
9 8 0.36
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (8 bp):
TTTTTTAA
Found at i:40094 original size:9 final size:9
Alignment explanation
Indices: 40080--40112 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
40070 TTCATGTTTT
40080 TTTTTTTAA
1 TTTTTTTAA
40089 -TTTTTTAA
1 TTTTTTTAA
*
40097 TTTTTTGAA
1 TTTTTTTAA
40106 TTTTTTT
1 TTTTTTT
40113 TATAAATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:40127 original size:29 final size:29
Alignment explanation
Indices: 40077--40132 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
40067 TACTTCATGT
* * * * *
40077 TTTTTTTTTTAATTTTTTAATTTTTTGAA
1 TTTTTTTTATAAATGTTAAATTATTTGAA
40106 TTTTTTTTATAAATGTTAAATTATTTG
1 TTTTTTTTATAAATGTTAAATTATTTG
40133 TCAACATTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (29 bp):
TTTTTTTTATAAATGTTAAATTATTTGAA
Found at i:49183 original size:26 final size:26
Alignment explanation
Indices: 49147--49277 Score: 120
Period size: 26 Copynumber: 5.0 Consensus size: 26
49137 CTCCCCCTAT
* *
49147 GAGCTCTCCTTGCAAGTTATGTCTAC
1 GAGCTCTCCTTGCGAGCTATGTCTAC
* * * * *
49173 GAGCGCTCCTTGCGAGTTGTGTTTGC
1 GAGCTCTCCTTGCGAGCTATGTCTAC
* *
49199 GAGC-CTTCCTTGCAACCTATGTCTAC
1 GAGCTC-TCCTTGCGAGCTATGTCTAC
* * *
49225 GAGCCCTCATTGCGAGCTATGCCTAC
1 GAGCTCTCCTTGCGAGCTATGTCTAC
* *
49251 GGGCTCTTCTTGCGAGCTATGTCTAC
1 GAGCTCTCCTTGCGAGCTATGTCTAC
49277 G
1 G
49278 GGCCCTCTAT
Statistics
Matches: 83, Mismatches: 20, Indels: 4
0.78 0.19 0.04
Matches are distributed among these distances:
25 1 0.01
26 81 0.98
27 1 0.01
ACGTcount: A:0.15, C:0.29, G:0.24, T:0.31
Consensus pattern (26 bp):
GAGCTCTCCTTGCGAGCTATGTCTAC
Found at i:49263 original size:52 final size:52
Alignment explanation
Indices: 49142--49284 Score: 144
Period size: 52 Copynumber: 2.8 Consensus size: 52
49132 GCTCACTCCC
* * * * * * *
49142 CCTATGAGCTCTCCTTGCAAGTTATGTCTACGAGCGCTCCTTGCGAGTTGTG
1 CCTACGAGCTCTTCTTGCAAGCTATGTCTACGAGCCCTCATTGCGAGCTATG
** * *
49194 TTTGCGAGC-CTTCCTTGCAACCTATGTCTACGAGCCCTCATTGCGAGCTATG
1 CCTACGAGCTCTT-CTTGCAAGCTATGTCTACGAGCCCTCATTGCGAGCTATG
* * *
49246 CCTACGGGCTCTTCTTGCGAGCTATGTCTACGGGCCCTC
1 CCTACGAGCTCTTCTTGCAAGCTATGTCTACGAGCCCTC
49285 TATCTTCAAG
Statistics
Matches: 71, Mismatches: 18, Indels: 4
0.76 0.19 0.04
Matches are distributed among these distances:
51 2 0.03
52 66 0.93
53 3 0.04
ACGTcount: A:0.15, C:0.31, G:0.24, T:0.31
Consensus pattern (52 bp):
CCTACGAGCTCTTCTTGCAAGCTATGTCTACGAGCCCTCATTGCGAGCTATG
Found at i:49998 original size:14 final size:15
Alignment explanation
Indices: 49972--50000 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
49962 TTACTTCCTC
49972 AAAATACATTAAAAT
1 AAAATACATTAAAAT
49987 AAAATA-ATTAAAAT
1 AAAATACATTAAAAT
50001 TTCAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAATACATTAAAAT
Found at i:51150 original size:14 final size:14
Alignment explanation
Indices: 51118--51161 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
51108 CACGAACGAT
51118 TATACGAATGAATAAA
1 TATACGAA--AATAAA
*
51134 TATACGAAAATAGA
1 TATACGAAAATAAA
*
51148 TATAAGAAAATAAA
1 TATACGAAAATAAA
51162 ATATGAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 17 0.68
16 8 0.32
ACGTcount: A:0.61, C:0.05, G:0.11, T:0.23
Consensus pattern (14 bp):
TATACGAAAATAAA
Found at i:51327 original size:29 final size:29
Alignment explanation
Indices: 51260--51672 Score: 280
Period size: 29 Copynumber: 14.1 Consensus size: 29
51250 AGTTTCAGAG
* *
51260 AGTTTGGGGTTAAAATGTAA-TTTTGGAA
1 AGTTTAGGGTAAAAATGTAATTTTTGGAA
* *
51288 AGATTTAAGGGTAAAAATGTCATTTTGGGAA
1 AG-TTT-AGGGTAAAAATGTAATTTTTGGAA
51319 AGTTTAGGGTAAAAAATGTAA--TTTGGAA
1 AGTTTAGGGT-AAAAATGTAATTTTTGGAA
* *
51347 AGTTTTAGGGGTAAAAATGTCATTTTAGGAA
1 AG-TTTA-GGGTAAAAATGTAATTTTTGGAA
* *
51378 A-TTTCGAGGTAAAAATGTGATTTTTGG-A
1 AGTTTAG-GGTAAAAATGTAATTTTTGGAA
* * *
51406 AGTTTGGGGGTAAAATTGTAGTTTTTGAGAA
1 AGTTT-AGGGTAAAAATGTAATTTTTG-GAA
* * *
51437 A-TTCGAGGATAAAAATGTGATTTTTTGG-A
1 AGTT-TAGGGTAAAAATGT-AATTTTTGGAA
* * *
51466 ACTTTGGAGGCAAAAATGTAATTTTT-GACA
1 AGTTTAG-GGTAAAAATGTAATTTTTGGA-A
51496 AGTTTAGGGTAAAAATGTAATTTTTGG-A
1 AGTTTAGGGTAAAAATGTAATTTTTGGAA
*
51524 AGTTTAGGGGAAAAATGTAATTTTTGG-A
1 AGTTTAGGGTAAAAATGTAATTTTTGGAA
* * *
51552 AGTTCAAGGCAAAAATGTAATTTTT--ATA
1 AGTTTAGGGTAAAAATGTAATTTTTGGA-A
* * * *
51580 AGTTTATGGCTAAATTATG--ATTTTAGAAA
1 AGTTTA-GGGTAAA-AATGTAATTTTTGGAA
*
51609 AGTTTAGGGGTTAAAATGTAA-TTTTGGAA
1 AGTTTA-GGGTAAAAATGTAATTTTTGGAA
* * * * *
51638 AATTTCAAGGGTTAAAATATGATTTTTGGAC
1 AGTTT--AGGGTAAAAATGTAATTTTTGGAA
51669 AGTT
1 AGTT
51673 CAAGGACCTT
Statistics
Matches: 305, Mismatches: 49, Indels: 59
0.74 0.12 0.14
Matches are distributed among these distances:
28 78 0.26
29 113 0.37
30 78 0.26
31 36 0.12
ACGTcount: A:0.36, C:0.03, G:0.24, T:0.37
Consensus pattern (29 bp):
AGTTTAGGGTAAAAATGTAATTTTTGGAA
Found at i:51409 original size:59 final size:57
Alignment explanation
Indices: 51271--51585 Score: 259
Period size: 59 Copynumber: 5.4 Consensus size: 57
51261 GTTTGGGGTT
* * * * *
51271 AAAATGTAATTTTGGAAAGATTTAAGGGTAAAAATGTCATTTTGGGAAAGTTTAG-GGTAA
1 AAAATGTATTTTTGG-AAG-TTTAGGGGTAAAAATGTAATTTTTGGAAA-TTTCGAGGT-A
* * *
51331 AAAATGTA-ATTTGGAAAGTTTTAGGGGTAAAAATGTCATTTTAGGAAATTTCGAGGTA
1 AAAATGTATTTTTGG-AAG-TTTAGGGGTAAAAATGTAATTTTTGGAAATTTCGAGGTA
* * *
51389 AAAATGTGATTTTTGGAAGTTTGGGGGTAAAATTGTAGTTTTTGAGAAA-TTCGAGGATA
1 AAAATGT-ATTTTTGGAAGTTTAGGGGTAAAAATGTAATTTTTG-GAAATTTCGAGG-TA
* * *
51448 AAAATGTGATTTTTTGGAACTTT-GGAGGCAAAAATGTAATTTTT-GACAAGTTTAG-GGTA
1 AAAATGT-A-TTTTTGGAAGTTTAGG-GGTAAAAATGTAATTTTTGGA-AA-TTTCGAGGTA
* * *
51507 AAAATGTAATTTTTGGAAGTTTAGGGG-AAAAATGTAATTTTTGG-AAGTTCAAGGCA
1 AAAATGT-ATTTTTGGAAGTTTAGGGGTAAAAATGTAATTTTTGGAAATTTCGAGGTA
**
51563 AAAATGTAATTTTTATAAGTTTA
1 AAAATGT-ATTTTTGGAAGTTTA
51586 TGGCTAAATT
Statistics
Matches: 218, Mismatches: 24, Indels: 30
0.80 0.09 0.11
Matches are distributed among these distances:
55 2 0.01
56 26 0.12
57 15 0.07
58 56 0.26
59 74 0.34
60 42 0.19
61 3 0.01
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.36
Consensus pattern (57 bp):
AAAATGTATTTTTGGAAGTTTAGGGGTAAAAATGTAATTTTTGGAAATTTCGAGGTA
Found at i:51582 original size:28 final size:28
Alignment explanation
Indices: 51473--51585 Score: 136
Period size: 28 Copynumber: 4.0 Consensus size: 28
51463 GGAACTTTGG
*
51473 AGGCAAAAATGTAATTTTTGACAAGTTTA
1 AGGCAAAAATGTAATTTTT-AGAAGTTTA
* * *
51502 GGGTAAAAATGTAATTTTTGGAAGTTTA
1 AGGCAAAAATGTAATTTTTAGAAGTTTA
* * * *
51530 GGGGAAAAATGTAATTTTTGGAAGTTCA
1 AGGCAAAAATGTAATTTTTAGAAGTTTA
*
51558 AGGCAAAAATGTAATTTTTATAAGTTTA
1 AGGCAAAAATGTAATTTTTAGAAGTTTA
51586 TGGCTAAATT
Statistics
Matches: 73, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 56 0.77
29 17 0.23
ACGTcount: A:0.39, C:0.04, G:0.21, T:0.36
Consensus pattern (28 bp):
AGGCAAAAATGTAATTTTTAGAAGTTTA
Found at i:51612 original size:85 final size:84
Alignment explanation
Indices: 51260--51637 Score: 234
Period size: 89 Copynumber: 4.3 Consensus size: 84
51250 AGTTTCAGAG
* * * * *
51260 AGTTT-GGGGTTAAAATGTAATTTTGGAAAGATTTAAGGGTAAAAATGTCATTTTGGGA-AAGTT
1 AGTTTAGGGGTAAAAATGTAATTTTGG-AAG-TTCAA-GGCAAAAATGTAATTTT-TGACAAGTT
* *
51323 TAGGGTAAAAAATGTAA-TTTGGAA
62 TAGGCT-AAAAATG-AATTTTAGAA
* * * * * *
51347 AGTTTTAGGGGTAAAAATGTCATTTTAGGAAATTTCGAGGTAAAAATGTGATTTTTG-GAAGTTT
1 AG-TTTAGGGGTAAAAATGTAATTTT-GG-AAGTTCAAGGCAAAAATGTAATTTTTGACAAGTTT
* * * *
51411 GGGGGTAAAATTGTAGTTTTTGAGAA
63 -AGGCTAAAAATG-A-ATTTT-AGAA
* * * * **
51437 A--TTCGAGGATAAAAATGTGATTTTTTGGAACTTTGGAGGCAAAAATGTAATTTTTGACAAGTT
1 AGTTTAG-GGGTAAAAATGT-A-ATTTTGGAA-GTTCAAGGCAAAAATGTAATTTTTGACAAGTT
* * *
51500 TAGGGTAAAAATGTAATTTTTGGA
62 TAGGCTAAAAATG-AATTTTAGAA
*
51524 AGTTTAGGGG-AAAAATGTAATTTTTGGAAGTTCAAGGCAAAAATGTAATTTTT-ATAAGTTTAT
1 AGTTTAGGGGTAAAAATGTAA-TTTTGGAAGTTCAAGGCAAAAATGTAATTTTTGACAAGTTTA-
*
51587 GGCTAAATTATG-ATTTTAGAAA
64 GGCTAAA-AATGAATTTTAG-AA
*
51609 AGTTTAGGGGTTAAAATGTAATTTTGGAA
1 AGTTTAGGGGTAAAAATGTAATTTTGGAA
51638 AATTTCAAGG
Statistics
Matches: 235, Mismatches: 36, Indels: 42
0.75 0.12 0.13
Matches are distributed among these distances:
84 14 0.06
85 46 0.20
86 21 0.09
87 31 0.13
88 42 0.18
89 62 0.26
90 19 0.08
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.37
Consensus pattern (84 bp):
AGTTTAGGGGTAAAAATGTAATTTTGGAAGTTCAAGGCAAAAATGTAATTTTTGACAAGTTTAGG
CTAAAAATGAATTTTAGAA
Found at i:52603 original size:13 final size:13
Alignment explanation
Indices: 52585--52626 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
52575 AACTTTCCTT
52585 TTATTATTTATTA
1 TTATTATTTATTA
* *
52598 TTATTAATTAATA
1 TTATTATTTATTA
52611 TTA-TATTTATTTA
1 TTATTATTTA-TTA
52624 TTA
1 TTA
52627 AAATATTTAG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
12 5 0.21
13 19 0.79
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATTATTTATTA
Found at i:53347 original size:17 final size:17
Alignment explanation
Indices: 53325--53409 Score: 93
Period size: 17 Copynumber: 5.1 Consensus size: 17
53315 AACTTAATTT
*
53325 TAAATTTAAATTTATAA
1 TAAATTTAAATTTAAAA
* ***
53342 TAAATTCAAACCCAAAA
1 TAAATTTAAATTTAAAA
*
53359 TAAGTTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
53376 TAAATTTAAATTT-AAA
1 TAAATTTAAATTTAAAA
53392 T-AATTTAAAATTTAAAA
1 TAAATTT-AAATTTAAAA
53409 T
1 T
53410 TGAGTTTCAT
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
15 5 0.09
16 10 0.18
17 40 0.73
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.39
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:55631 original size:22 final size:22
Alignment explanation
Indices: 55606--55649 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
55596 TATTTTGAAG
55606 ATAGACAACAATATTGATTGCT
1 ATAGACAACAATATTGATTGCT
* *
55628 ATAGATAACAATGTTGATTGCT
1 ATAGACAACAATATTGATTGCT
55650 TCAACCTAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (22 bp):
ATAGACAACAATATTGATTGCT
Found at i:61539 original size:13 final size:14
Alignment explanation
Indices: 61500--61541 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
61490 TGATACCAAC
*
61500 ATAAA-ATTTTAAC
1 ATAAATATTTTAAT
*
61513 ACAAATATTTTAAT
1 ATAAATATTTTAAT
61527 ATAAATA-TTTAAT
1 ATAAATATTTTAAT
61540 AT
1 AT
61542 GATTAAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 12 0.48
14 13 0.52
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (14 bp):
ATAAATATTTTAAT
Found at i:61607 original size:17 final size:17
Alignment explanation
Indices: 61585--61618 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
61575 ATGTGAATTT
61585 TAATATA-ATAATATAAA
1 TAATATATATAA-ATAAA
61602 TAATATATATAAATAAA
1 TAATATATATAAATAAA
61619 ATTATTAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TAATATATATAAATAAA
Found at i:61898 original size:19 final size:20
Alignment explanation
Indices: 61874--61913 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
61864 GAAAGTGGGA
*
61874 GAAAATGAAA-GTTTCGAGG
1 GAAAATAAAATGTTTCGAGG
*
61893 GAAAATAAAATGTTTTGAGG
1 GAAAATAAAATGTTTCGAGG
61913 G
1 G
61914 TTTTGGGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.42, C:0.03, G:0.30, T:0.25
Consensus pattern (20 bp):
GAAAATAAAATGTTTCGAGG
Found at i:62204 original size:18 final size:18
Alignment explanation
Indices: 62181--62215 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
62171 AATCGAGTTG
*
62181 ACTCGAATAACTCGATTA
1 ACTCGAACAACTCGATTA
62199 ACTCGAACAACTCGATT
1 ACTCGAACAACTCGATT
62216 CGTTTAACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.26
Consensus pattern (18 bp):
ACTCGAACAACTCGATTA
Found at i:69763 original size:47 final size:47
Alignment explanation
Indices: 69709--69804 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
69699 TAATTGAAGC
69709 AACTAACCAAGCAAAGAAACTAACTCGTATATAAAATATTAATAAAT
1 AACTAACCAAGCAAAGAAACTAACTCGTATATAAAATATTAATAAAT
69756 AACTAACCAAGCAAAGAAACTAACTCGTATATAAAATATTAATAAAT
1 AACTAACCAAGCAAAGAAACTAACTCGTATATAAAATATTAATAAAT
69803 AA
1 AA
69805 ATTATTAGGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.56, C:0.15, G:0.06, T:0.23
Consensus pattern (47 bp):
AACTAACCAAGCAAAGAAACTAACTCGTATATAAAATATTAATAAAT
Found at i:75657 original size:30 final size:30
Alignment explanation
Indices: 75616--75677 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
75606 ATACATTCGA
* *
75616 ACCACAATTAAAGTTTCATGTGTATAATTAC
1 ACCACAATTAAAG-TTCATGTATACAATTAC
75647 ACCA-AATTAAAGTTCATGTATACAATTAC
1 ACCACAATTAAAGTTCATGTATACAATTAC
75676 AC
1 AC
75678 ATTAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 17 0.59
30 8 0.28
31 4 0.14
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (30 bp):
ACCACAATTAAAGTTCATGTATACAATTAC
Found at i:75673 original size:29 final size:31
Alignment explanation
Indices: 75590--75677 Score: 94
Period size: 31 Copynumber: 2.9 Consensus size: 31
75580 ACTAAATCAA
* *
75590 AATTAAAATTTCAAGTATAC-ATT-CGAACCAC
1 AATTAAAGTTTCATGTATACAATTAC--ACCAC
* *
75621 AATTAAAGTTTCATGTGTATAATTACACCA-
1 AATTAAAGTTTCATGTATACAATTACACCAC
75651 AATTAAAG-TTCATGTATACAATTACAC
1 AATTAAAGTTTCATGTATACAATTACAC
75678 ATTAAATCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
29 17 0.35
30 8 0.16
31 20 0.41
32 3 0.06
33 1 0.02
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.33
Consensus pattern (31 bp):
AATTAAAGTTTCATGTATACAATTACACCAC
Found at i:75702 original size:29 final size:27
Alignment explanation
Indices: 75635--75702 Score: 73
Period size: 31 Copynumber: 2.4 Consensus size: 27
75625 AAAGTTTCAT
*
75635 GTGTATAATTACACCAAATTAAAGTTC
1 GTGTATAATTACACCAAATCAAAGTTC
* *
75662 ATGTATACAATTACACATTAAATCAAAGTTC
1 GTGTAT--AATTACAC--CAAATCAAAGTTC
75693 GTGTATAATT
1 GTGTATAATT
75703 TTGAGATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
27 5 0.15
29 12 0.36
31 16 0.48
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.35
Consensus pattern (27 bp):
GTGTATAATTACACCAAATCAAAGTTC
Found at i:78368 original size:25 final size:25
Alignment explanation
Indices: 78340--78422 Score: 87
Period size: 25 Copynumber: 3.3 Consensus size: 25
78330 CTGAATTTTA
* * *
78340 GCTCGTAAGAGCAATATTTTGTCTG
1 GCTCATAAAAGCAATATTCTGTCTG
* * *
78365 GCTCGTAAAAGCGATATTCTATCTG
1 GCTCATAAAAGCAATATTCTGTCTG
*
78390 GCTCATAAAAGCACTATTCTG-CTTG
1 GCTCATAAAAGCAATATTCTGTC-TG
78415 GCTCATAA
1 GCTCATAA
78423 GAGCGTTAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
24 1 0.02
25 48 0.98
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (25 bp):
GCTCATAAAAGCAATATTCTGTCTG
Found at i:84069 original size:18 final size:18
Alignment explanation
Indices: 84046--84084 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
84036 AAAAATCAAG
*
84046 TTTCACTTCAATTCT-ATT
1 TTTCACATC-ATTCTCATT
84064 TTTCACATCATTCTCATT
1 TTTCACATCATTCTCATT
84082 TTT
1 TTT
84085 GTCCCATATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.21, C:0.23, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTCACATCATTCTCATT
Found at i:87082 original size:25 final size:24
Alignment explanation
Indices: 87034--87128 Score: 93
Period size: 25 Copynumber: 3.9 Consensus size: 24
87024 ATTATGGCTT
* *
87034 GTAAGAGCAAT-TTCAGTCTGGCTC
1 GTAAGAGAAATATTCTGTCT-GCTC
87058 GTAAGAGAAATATTCTGTCTAGCTC
1 GTAAGAGAAATATTCTGTCT-GCTC
* ** *
87083 ATAAGAGCGATATTATGTCTGACTC
1 GTAAGAGAAATATTCTGTCTG-CTC
*
87108 GTAAGAGAGATATTCTGTCTG
1 GTAAGAGAAATATTCTGTCTG
87129 GGCTCGAAAG
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
24 11 0.19
25 48 0.81
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (24 bp):
GTAAGAGAAATATTCTGTCTGCTC
Found at i:87157 original size:50 final size:50
Alignment explanation
Indices: 87055--87162 Score: 114
Period size: 50 Copynumber: 2.2 Consensus size: 50
87045 TTCAGTCTGG
***
87055 CTCGTAAGAGAAATATTCTGTCTAGCTCATAAGAGCGATATTATGTCTGA
1 CTCGTAAGAGAAATATTCTGTCTAGCTCATAAGAGCGATATTATGGAAGA
* * * *
87105 CTCGTAAGAGAGATATTCTGTCTGGGCTCGA-AAGAGCTA-ATTTTGGAAGA
1 CTCGTAAGAGAAATATTCTGTCT-AGCTC-ATAAGAGCGATATTATGGAAGA
87155 CTCG-AAGA
1 CTCGTAAGA
87163 CATCGACTTG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
49 4 0.08
50 33 0.67
51 11 0.22
52 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (50 bp):
CTCGTAAGAGAAATATTCTGTCTAGCTCATAAGAGCGATATTATGGAAGA
Found at i:97311 original size:6 final size:6
Alignment explanation
Indices: 97300--97332 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
97290 GCAGCTCATG
*
97300 AAGAGA AAGAGA AAGAGA AAGAGA AGGAGA AAG
1 AAGAGA AAGAGA AAGAGA AAGAGA AAGAGA AAG
97333 CCATAGCCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (6 bp):
AAGAGA
Found at i:101111 original size:30 final size:30
Alignment explanation
Indices: 101075--101137 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
101065 GCATCTTGCT
*
101075 ACACGGGCTGGGCACAAGACCGTGTGAGCC
1 ACACGGGCTGGACACAAGACCGTGTGAGCC
* * *
101105 ACACGGGCTGGACAGACGTCCGTGTGAGCC
1 ACACGGGCTGGACACAAGACCGTGTGAGCC
101135 ACA
1 ACA
101138 TGAACCTATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.24, C:0.30, G:0.35, T:0.11
Consensus pattern (30 bp):
ACACGGGCTGGACACAAGACCGTGTGAGCC
Found at i:107149 original size:23 final size:24
Alignment explanation
Indices: 107080--107149 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 24
107070 CCAAACAAAA
* *
107080 TTAGCTCATACGAGCCCAG-ATAGG
1 TTAGCTCTTACGAGCCCAGAAT-TG
107104 TTAGCTCTTACGAGCCCAGAATTG
1 TTAGCTCTTACGAGCCCAGAATTG
107128 TTAGCTCTTACGAG-CCAGAATT
1 TTAGCTCTTACGAGCCCAGAATT
107150 AGAATAACCC
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
23 8 0.19
24 33 0.77
25 2 0.05
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (24 bp):
TTAGCTCTTACGAGCCCAGAATTG
Found at i:112540 original size:54 final size:54
Alignment explanation
Indices: 112453--112568 Score: 180
Period size: 54 Copynumber: 2.1 Consensus size: 54
112443 CTACTTTCTC
*
112453 TTTTCAAATGAAAAATAATGAAAGAAACAATTATTTTAATAA-CCATAATATGATG
1 TTTT-AAATGAAAAATAATGAAAGAAACAATTATTTTAA-AATCCATAATATGATA
* *
112508 TTTTAAATGAAAAATAGTGAAAGAAACAATTATTTTAAAATCCATAATGTGATA
1 TTTTAAATGAAAAATAATGAAAGAAACAATTATTTTAAAATCCATAATATGATA
112562 TTTTAAA
1 TTTTAAA
112569 AATAAATAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
53 2 0.04
54 51 0.89
55 4 0.07
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.34
Consensus pattern (54 bp):
TTTTAAATGAAAAATAATGAAAGAAACAATTATTTTAAAATCCATAATATGATA
Found at i:114565 original size:25 final size:25
Alignment explanation
Indices: 114531--114580 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
114521 AATTCCTTGG
*
114531 AAGTAGGTGAAGATAGGGATTTAGC
1 AAGTAGGTGAAGATAGGAATTTAGC
*
114556 AAGTAGGTGAAGGTAGGAATTTAGC
1 AAGTAGGTGAAGATAGGAATTTAGC
114581 TAATTCACTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.36, C:0.04, G:0.36, T:0.24
Consensus pattern (25 bp):
AAGTAGGTGAAGATAGGAATTTAGC
Found at i:119467 original size:21 final size:22
Alignment explanation
Indices: 119418--119470 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
119408 CTAATGGTTA
*
119418 AAATATTTAATTTAAAAAAATT
1 AAATAATTAATTTAAAAAAATT
*
119440 AAATAATTAATTTGAAAAAATT
1 AAATAATTAATTTAAAAAAATT
*
119462 -AGTAATTAA
1 AAATAATTAA
119471 GTAATCAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 8 0.29
22 20 0.71
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
AAATAATTAATTTAAAAAAATT
Found at i:126921 original size:2 final size:2
Alignment explanation
Indices: 126914--126963 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
126904 GTTTTGTTTT
126914 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
126956 TA TA TA TA
1 TA TA TA TA
126964 CAATTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:133181 original size:2 final size:2
Alignment explanation
Indices: 133168--133208 Score: 55
Period size: 2 Copynumber: 20.0 Consensus size: 2
133158 GTTACTGTAC
* *
133168 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT CAT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
133209 GGAAAGGGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
2 32 0.94
3 2 0.06
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:135007 original size:4 final size:4
Alignment explanation
Indices: 134998--135034 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
134988 ATTAAAACAA
134998 TATG TATG TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG T
135035 CACAGAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:142679 original size:15 final size:14
Alignment explanation
Indices: 142652--142706 Score: 51
Period size: 15 Copynumber: 3.9 Consensus size: 14
142642 CTAAATTAAC
142652 ATCATTTCT-ATTTT
1 ATCATTT-TAATTTT
142666 GATCATTTTAATTTT
1 -ATCATTTTAATTTT
* *
142681 -TCTTTGTTAATTTA
1 ATCATT-TTAATTTT
142695 ATCATTTTAATT
1 ATCATTTTAATT
142707 AGAATAATTG
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
13 4 0.12
14 14 0.41
15 16 0.47
ACGTcount: A:0.25, C:0.09, G:0.04, T:0.62
Consensus pattern (14 bp):
ATCATTTTAATTTT
Found at i:142977 original size:11 final size:11
Alignment explanation
Indices: 142961--143049 Score: 56
Period size: 11 Copynumber: 7.9 Consensus size: 11
142951 ATCAGACCCC
*
142961 TTTTAAGTTTA
1 TTTTAAATTTA
142972 TTTTAAATTTAA
1 TTTTAAATTT-A
* *
142984 ATTT-ACTTTAA
1 TTTTAAATTT-A
*
142995 ATTTAAATTTA
1 TTTTAAATTTA
*
143006 CTTTAAATTTAA
1 TTTTAAATTT-A
*
143018 ATTT-AATTTAA
1 TTTTAAATTT-A
*
143029 GTTTAAATTTA
1 TTTTAAATTTA
*
143040 TTTTCAATTT
1 TTTTAAATTT
143050 TAAAATTATG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
11 48 0.74
12 17 0.26
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.57
Consensus pattern (11 bp):
TTTTAAATTTA
Found at i:142982 original size:6 final size:6
Alignment explanation
Indices: 142973--143039 Score: 86
Period size: 6 Copynumber: 11.7 Consensus size: 6
142963 TTAAGTTTAT
* *
142973 TTTAAA TTTAAA TTT-AC TTTAAA TTTAAA TTT-AC TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
143019 TTT-AA TTTAAG TTTAAA TTTA
1 TTTAAA TTTAAA TTTAAA TTTA
143040 TTTTCAATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
5 13 0.25
6 39 0.75
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:142988 original size:17 final size:17
Alignment explanation
Indices: 142962--143049 Score: 122
Period size: 17 Copynumber: 5.2 Consensus size: 17
142952 TCAGACCCCT
* *
142962 TTTAAGTTTATTTTAAA
1 TTTAAATTTACTTTAAA
142979 TTTAAATTTACTTTAAA
1 TTTAAATTTACTTTAAA
142996 TTTAAATTTACTTTAAA
1 TTTAAATTTACTTTAAA
* *
143013 TTTAAATTTAATTTAAG
1 TTTAAATTTACTTTAAA
* *
143030 TTTAAATTTATTTTCAA
1 TTTAAATTTACTTTAAA
143047 TTT
1 TTT
143050 TAAAATTATG
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 64 1.00
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (17 bp):
TTTAAATTTACTTTAAA
Found at i:142999 original size:23 final size:23
Alignment explanation
Indices: 142973--143039 Score: 75
Period size: 23 Copynumber: 2.9 Consensus size: 23
142963 TTAAGTTTAT
142973 TTTAAATTTAAATTT-ACTTTAAA
1 TTTAAATTT-AATTTAACTTTAAA
* *
142996 TTTAAATTTACTTTAAATTTAAA
1 TTTAAATTTAATTTAACTTTAAA
*
143019 TTT-AATTTAAGTTTAAATTTA
1 TTTAAATTTAA-TTTAACTTTA
143040 TTTTCAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
22 10 0.26
23 29 0.74
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (23 bp):
TTTAAATTTAATTTAACTTTAAA
Found at i:144770 original size:30 final size:30
Alignment explanation
Indices: 144734--145033 Score: 151
Period size: 30 Copynumber: 9.9 Consensus size: 30
144724 CCTTAAAGGT
* *
144734 CCCTAAACTATCCAAAAATTATATTTTAAC
1 CCCTAAACTTTCCAAAAATTACATTTTAAC
* * * *
144764 CCCTAAA-ATTCTCTAAAATTATATTTTGACC
1 CCCTAAACTTTC-CAAAAATTACATTTT-AAC
* *
144795 CCCCAAACTTTCTAAAAATTACATTTTTAA-
1 CCCTAAACTTTCCAAAAATTACA-TTTTAAC
* ** * *
144825 CCTTAATTTTTCCAAAAATAACATTTTTAC
1 CCCTAAACTTTCCAAAAATTACATTTTAAC
* * *
144855 CCCTAAATTTTCC-AAAATTCCATTTTTTTTTA-
1 CCCTAAACTTTCCAAAAATTACA----TTTTAAC
** *
144887 CCCT-AA-TTTCACCAAAAATTATGTTTTTAC
1 CCCTAAACTTT--CCAAAAATTACATTTTAAC
*
144917 CCCTAAACTTTCC-AAAATTCCATTTTTAA-
1 CCCTAAACTTTCCAAAAATTACA-TTTTAAC
144946 CCCT-AA-TTTCACCAAAAATTACCATTTT-AC
1 CCCTAAACTTT--CCAAAAATTA-CATTTTAAC
* *
144976 CCCAAAACTTTCC-AAAATTCCATTTTTAAC
1 CCCTAAACTTTCCAAAAATTACA-TTTTAAC
*
145006 CCC--AATTTTGCCAAAAATTACCATTTTA
1 CCCTAAACTTT-CCAAAAATTA-CATTTTA
145034 CCCTCGATCT
Statistics
Matches: 209, Mismatches: 33, Indels: 56
0.70 0.11 0.19
Matches are distributed among these distances:
27 3 0.01
28 9 0.04
29 45 0.22
30 94 0.45
31 27 0.13
32 19 0.09
33 12 0.06
ACGTcount: A:0.36, C:0.25, G:0.01, T:0.38
Consensus pattern (30 bp):
CCCTAAACTTTCCAAAAATTACATTTTAAC
Found at i:144821 original size:31 final size:30
Alignment explanation
Indices: 144738--144826 Score: 90
Period size: 31 Copynumber: 2.9 Consensus size: 30
144728 AAAGGTCCCT
* * *
144738 AAACTATCCAAAAATTATATTTTAACCCCT
1 AAACTTTCTAAAAATTATATTTTAACCCCC
* *
144768 AAAATTCTCT-AAAATTATATTTTGACCCCCC
1 AAACTT-TCTAAAAATTATATTTT-AACCCCC
*
144799 AAACTTTCTAAAAATTACATTTTTAACC
1 AAACTTTCTAAAAATTATA-TTTTAACC
144827 TTAATTTTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
30 20 0.43
31 23 0.49
32 4 0.09
ACGTcount: A:0.40, C:0.22, G:0.01, T:0.36
Consensus pattern (30 bp):
AAACTTTCTAAAAATTATATTTTAACCCCC
Found at i:144872 original size:29 final size:29
Alignment explanation
Indices: 144809--145094 Score: 160
Period size: 30 Copynumber: 9.6 Consensus size: 29
144799 AAACTTTCTA
* * * *
144809 AAAATTACATTTTTAACCTTAATTTTTCC
1 AAAATTCCATTTTTACCCCTAAATTTTCC
**
144838 AAAAATAACATTTTTACCCCTAAATTTTCC
1 -AAAATTCCATTTTTACCCCTAAATTTTCC
*
144868 AAAATTCCATTTTTTTTTA-CCCT-AATTTCACC
1 AAAATTCCA----TTTTTACCCCTAAATTT-TCC
*** *
144900 AAAAATTATGTTTTTACCCCTAAACTTTCC
1 -AAAATTCCATTTTTACCCCTAAATTTTCC
* *
144930 AAAATTCCATTTTTAACCCT-AATTTCACC
1 AAAATTCCATTTTTACCCCTAAATTT-TCC
* *
144959 AAAAATTACCA-TTTTACCCCAAAACTTTCC
1 -AAAATT-CCATTTTTACCCCTAAATTTTCC
144989 AAAATTCCATTTTTAACCCC--AATTTTGCC
1 AAAATTCCATTTTT-ACCCCTAAATTTT-CC
** *
145018 AAAAATTACCA-TTTTA-CCCTCGATCTTCC
1 -AAAATT-CCATTTTTACCCCTAAATTTTCC
* * *
145047 TAAAATTCCATTTTGAACCCC-GATTTTTCC
1 -AAAATTCCATTTT-TACCCCTAAATTTTCC
145077 AAAATTACCA-TTTTACCC
1 AAAATT-CCATTTTTACCC
145095 TCGAGTGTTT
Statistics
Matches: 201, Mismatches: 32, Indels: 48
0.72 0.11 0.17
Matches are distributed among these distances:
28 22 0.11
29 64 0.32
30 75 0.37
31 22 0.11
32 6 0.03
33 12 0.06
ACGTcount: A:0.34, C:0.26, G:0.02, T:0.39
Consensus pattern (29 bp):
AAAATTCCATTTTTACCCCTAAATTTTCC
Found at i:144934 original size:121 final size:123
Alignment explanation
Indices: 144778--145002 Score: 321
Period size: 121 Copynumber: 1.8 Consensus size: 123
144768 AAAATTCTCT
* **
144778 AAAATTATATTTTGACCCCCCAAACTTTCTAAAAATTACATTTTTAACCTTAATTTTTCCAAAAA
1 AAAATTATATTTTGACCCCCCAAACTTTCTAAAAATTACATTTTTAACCCTAATTTCACCAAAAA
* *
144843 -TAACATTTTTACCCCTAAATTTTCCAAAATTCCATTTTTTTTTACCCTAATTTCACCA
66 TTAACA-TTTTACCCCAAAACTTTCCAAAATTCCATTTTTTTTTACCCTAATTTCACCA
* * * * *
144901 AAAATTATGTTTTTA-CCCCTAAACTTTC-CAAAATTCCATTTTTAACCCTAATTTCACCAAAAA
1 AAAATTATATTTTGACCCCCCAAACTTTCTAAAAATTACATTTTTAACCCTAATTTCACCAAAAA
*
144964 TTACCATTTTACCCCAAAACTTTCCAAAATTCCATTTTT
66 TTAACATTTTACCCCAAAACTTTCCAAAATTCCATTTTT
145003 AACCCCAATT
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
121 61 0.68
122 16 0.18
123 13 0.14
ACGTcount: A:0.35, C:0.24, G:0.01, T:0.40
Consensus pattern (123 bp):
AAAATTATATTTTGACCCCCCAAACTTTCTAAAAATTACATTTTTAACCCTAATTTCACCAAAAA
TTAACATTTTACCCCAAAACTTTCCAAAATTCCATTTTTTTTTACCCTAATTTCACCA
Found at i:144974 original size:59 final size:59
Alignment explanation
Indices: 144794--145094 Score: 313
Period size: 59 Copynumber: 5.1 Consensus size: 59
144784 ATATTTTGAC
* * * * * *
144794 CCCCCAAACTTTCTAAAAATTACATTTTTAACCTTAATTTTTCCAAAAA-TAACATTTTTA
1 CCCCTAAACTTTC-CAAAATTCCATTTTTAACCCTAATTTTACCAAAAATTACCA-TTTTA
* * * ***
144854 CCCCTAAATTTTCCAAAATTCCATTTTTTTTTACCCTAATTTCACCAAAAATTATGTTTTTA
1 CCCCTAAACTTTCCAAAATTCCA---TTTTTAACCCTAATTTTACCAAAAATTACCATTTTA
*
144916 CCCCTAAACTTTCCAAAATTCCATTTTTAACCCTAATTTCACCAAAAATTACCATTTTA
1 CCCCTAAACTTTCCAAAATTCCATTTTTAACCCTAATTTTACCAAAAATTACCATTTTA
* * *
144975 CCCCAAAACTTTCCAAAATTCCATTTTTAACCCCAATTTTGCCAAAAATTACCATTTTA
1 CCCCTAAACTTTCCAAAATTCCATTTTTAACCCTAATTTTACCAAAAATTACCATTTTA
** * ** *
145034 -CCCTCGA-TCTTCCTAAAATTCCATTTTGAACCCCGATTTTTCC-AAAATTACCATTTTA
1 CCCCTAAACT-TTCC-AAAATTCCATTTTTAACCCTAATTTTACCAAAAATTACCATTTTA
145092 CCC
1 CCC
145095 TCGAGTGTTT
Statistics
Matches: 208, Mismatches: 26, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
57 1 0.00
58 23 0.11
59 123 0.59
60 11 0.05
62 48 0.23
63 2 0.01
ACGTcount: A:0.33, C:0.27, G:0.02, T:0.38
Consensus pattern (59 bp):
CCCCTAAACTTTCCAAAATTCCATTTTTAACCCTAATTTTACCAAAAATTACCATTTTA
Found at i:150487 original size:27 final size:27
Alignment explanation
Indices: 150457--150513 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
150447 TAATATTTTA
150457 TTTAA-TTAATTACAAAATAATTTTATT
1 TTTAATTTAATTA-AAAATAATTTTATT
** *
150484 TTTAATTTAATTATTAATATTTTTATT
1 TTTAATTTAATTAAAAATAATTTTATT
150511 TTT
1 TTT
150514 CAATCTCACA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 19 0.73
28 7 0.27
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (27 bp):
TTTAATTTAATTAAAAATAATTTTATT
Found at i:151192 original size:16 final size:15
Alignment explanation
Indices: 151173--151223 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 15
151163 ATGTTAGTTT
151173 TTTATTATATTTTTTA
1 TTTATTA-ATTTTTTA
151189 TTTA-TAATTTTTTA
1 TTTATTAATTTTTTA
* *
151203 TCATGTTAATTTTTTA
1 T-TTATTAATTTTTTA
151219 TTTAT
1 TTTAT
151224 AAAATAAGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
14 9 0.31
15 5 0.17
16 15 0.52
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTATTAATTTTTTA
Found at i:151193 original size:13 final size:14
Alignment explanation
Indices: 151170--151225 Score: 64
Period size: 14 Copynumber: 4.0 Consensus size: 14
151160 TGAATGTTAG
151170 TTTTTTA-TTAT-A
1 TTTTTTATTTATAA
151182 TTTTTTATTTATAA
1 TTTTTTATTTATAA
151196 TTTTTTATCATGT-TAA
1 TTTTTTAT--T-TATAA
151212 TTTTTTATTTATAA
1 TTTTTTATTTATAA
151226 AATAAGTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
12 7 0.18
13 5 0.13
14 13 0.34
16 12 0.32
17 1 0.03
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (14 bp):
TTTTTTATTTATAA
Found at i:151320 original size:19 final size:18
Alignment explanation
Indices: 151292--151330 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
151282 AAGTTTTTTA
151292 TTTATAAATTATTAATAT
1 TTTATAAATTATTAATAT
*
151310 TTTAGTAAATTATTAGTAT
1 TTTA-TAAATTATTAATAT
151329 TT
1 TT
151331 ATTTTATATC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (18 bp):
TTTATAAATTATTAATAT
Found at i:152130 original size:3 final size:3
Alignment explanation
Indices: 152122--152164 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
152112 AAAAGTGTAG
152122 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
152165 ACTAAAGTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:152344 original size:20 final size:20
Alignment explanation
Indices: 152299--152346 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
152289 ATACAATAAT
**
152299 AATAGTATTTTAATTTTAGTA
1 AATA-TATTTTAATTTTAAAA
*
152320 CATATATTTTAATTTTAAAA
1 AATATATTTTAATTTTAAAA
152340 AATATAT
1 AATATAT
152347 AATTATATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (20 bp):
AATATATTTTAATTTTAAAA
Found at i:153199 original size:17 final size:17
Alignment explanation
Indices: 153174--153206 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
153164 TATAAAATTA
*
153174 TTAATTAATTATATATG
1 TTAAATAATTATATATG
153191 TTAAATAATTATATAT
1 TTAAATAATTATATAT
153207 TTATATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (17 bp):
TTAAATAATTATATATG
Found at i:153199 original size:21 final size:22
Alignment explanation
Indices: 153175--153224 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
153165 ATAAAATTAT
*
153175 TAATTAAT-TATATATGTTAAA
1 TAATTAATATATATATATTAAA
*
153196 TAATT-ATATATTTATATTAAA
1 TAATTAATATATATATATTAAA
*
153217 TCATTAAT
1 TAATTAAT
153225 CCAAAAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 20 0.83
22 2 0.08
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
TAATTAATATATATATATTAAA
Found at i:155952 original size:14 final size:14
Alignment explanation
Indices: 155933--155966 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
155923 AACTTGAAAC
155933 CTCAAATCCTAAAT
1 CTCAAATCCTAAAT
*
155947 CTCAAATTCTAAAT
1 CTCAAATCCTAAAT
155961 CTCAAA
1 CTCAAA
155967 CCTTAAACCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.29
Consensus pattern (14 bp):
CTCAAATCCTAAAT
Found at i:162446 original size:23 final size:23
Alignment explanation
Indices: 162382--162447 Score: 98
Period size: 23 Copynumber: 2.9 Consensus size: 23
162372 CTGTTATTAG
*
162382 TACTGTGTGTACTCTCTGATTAC
1 TACTGTGTGTACTCTCTGTTTAC
162405 TACTGTGTGTACTCTCTGTTTAAC
1 TACTGTGTGTACTCTCTGTTT-AC
*
162429 -ACTGTGTGTGCTCTCTGTT
1 TACTGTGTGTACTCTCTGTT
162448 GCCCAGCACT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
23 38 0.95
24 2 0.05
ACGTcount: A:0.14, C:0.21, G:0.20, T:0.45
Consensus pattern (23 bp):
TACTGTGTGTACTCTCTGTTTAC
Found at i:171092 original size:1 final size:1
Alignment explanation
Indices: 171045--171072 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
171035 AGTATTATGC
171045 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
171073 NNNNNNNNNN
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:171093 original size:1 final size:1
Alignment explanation
Indices: 171083--171109 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
171073 NNNNNNNNNN
171083 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
171110 TCAGAACTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:174968 original size:63 final size:63
Alignment explanation
Indices: 174869--174993 Score: 223
Period size: 63 Copynumber: 2.0 Consensus size: 63
174859 TCCTCCGCCG
* *
174869 CCGCCACCGGCAGCCTCCTTGCAGCCGAAGGAAAATGTAGTATCAGGAGGACCACCATTGCCT
1 CCGCCACCGCCAGCCTCCCTGCAGCCGAAGGAAAATGTAGTATCAGGAGGACCACCATTGCCT
*
174932 CCGCCACCGCCAGCTTCCCTGCAGCCGAAGGAAAATGTAGTATCAGGAGGACCACCATTGCC
1 CCGCCACCGCCAGCCTCCCTGCAGCCGAAGGAAAATGTAGTATCAGGAGGACCACCATTGCC
174994 CCCACCCCCA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.26, C:0.34, G:0.25, T:0.15
Consensus pattern (63 bp):
CCGCCACCGCCAGCCTCCCTGCAGCCGAAGGAAAATGTAGTATCAGGAGGACCACCATTGCCT
Found at i:177773 original size:20 final size:21
Alignment explanation
Indices: 177731--177774 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
177721 ATACTACATT
* *
177731 AATATTTTTATCTTGAATTAA
1 AATATTTTCATCTTGAATAAA
177752 AATATTTTCATCTTGAA-AAA
1 AATATTTTCATCTTGAATAAA
177772 AAT
1 AAT
177775 TTAAATTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (21 bp):
AATATTTTCATCTTGAATAAA
Found at i:179803 original size:6 final size:6
Alignment explanation
Indices: 179794--179860 Score: 57
Period size: 6 Copynumber: 11.3 Consensus size: 6
179784 CAAATTTATT
** **
179794 TTTAAA TTTAAA TTTATCT TTTAAA TTTAAA TTT-GC TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTA-AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
179842 TTT-AA TTAAAA TTCAAA TT
1 TTTAAA TTTAAA TTTAAA TT
179861 GATTTAGAAC
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
5 7 0.15
6 37 0.77
7 4 0.08
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.52
Consensus pattern (6 bp):
TTTAAA
Found at i:179808 original size:18 final size:18
Alignment explanation
Indices: 179785--179845 Score: 88
Period size: 19 Copynumber: 3.4 Consensus size: 18
179775 AAATTGATTC
179785 AAATTTATTTTTAAATTT
1 AAATTTATTTTTAAATTT
179803 AAATTTATCTTTTAAATTT
1 AAATTTAT-TTTTAAATTT
**
179822 AAATTT-GCTTTAAATTT
1 AAATTTATTTTTAAATTT
179839 AAATTTA
1 AAATTTA
179846 ATTAAAATTC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
17 15 0.38
18 8 0.21
19 16 0.41
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (18 bp):
AAATTTATTTTTAAATTT
Found at i:179809 original size:12 final size:12
Alignment explanation
Indices: 179794--179860 Score: 57
Period size: 11 Copynumber: 5.7 Consensus size: 12
179784 CAAATTTATT
179794 TTTAAATTTAAA
1 TTTAAATTTAAA
**
179806 TTTATCTTTTAAA
1 TTTA-AATTTAAA
**
179819 TTTAAATTT-GC
1 TTTAAATTTAAA
179830 TTTAAATTTAAA
1 TTTAAATTTAAA
*
179842 TTT-AATTAAAA
1 TTTAAATTTAAA
*
179853 TTCAAATT
1 TTTAAATT
179861 GATTTAGAAC
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
11 18 0.43
12 14 0.33
13 10 0.24
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.52
Consensus pattern (12 bp):
TTTAAATTTAAA
Found at i:179853 original size:17 final size:17
Alignment explanation
Indices: 179794--179860 Score: 71
Period size: 17 Copynumber: 3.8 Consensus size: 17
179784 CAAATTTATT
*
179794 TTTAAATTTAAATTTATCT
1 TTTAAATTTAAATTTA--A
**
179813 TTTAAATTTAAATTTGC
1 TTTAAATTTAAATTTAA
179830 TTTAAATTTAAATTTAA
1 TTTAAATTTAAATTTAA
* *
179847 TTAAAATTCAAATT
1 TTTAAATTTAAATT
179861 GATTTAGAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
17 27 0.64
19 15 0.36
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.52
Consensus pattern (17 bp):
TTTAAATTTAAATTTAA
Found at i:181715 original size:30 final size:29
Alignment explanation
Indices: 181659--182056 Score: 367
Period size: 30 Copynumber: 13.4 Consensus size: 29
181649 AAACTGTTCG
* *
181659 AAAATTACATTTTTACCCTCAAACTTCCA
1 AAAATTCCATTTTTAACCTCAAACTTCCA
*
181688 AAAATTCCATTTTTGAACCTAAAACTTCCA
1 AAAATTCCATTTTT-AACCTCAAACTTCCA
* * *
181718 AAAA-TCACATTTTTACCCCCGAACTTCCA
1 AAAATTC-CATTTTTAACCTCAAACTTCCA
* *
181747 AAAATTCCATTTTTGACCTTGAAACTTCCA
1 AAAATTCCATTTTTAACC-TCAAACTTCCA
* *
181777 AAAA-TCACATTTTTACCCCCAAACTTCCA
1 AAAATTC-CATTTTTAACCTCAAACTTCCA
* *
181806 AAAGTTCCATTTTTAACCTTGAAACTTCCA
1 AAAATTCCATTTTTAACC-TCAAACTTCCA
** *
181836 AAAATAACATTTTTAACCTCAAACTTCTA
1 AAAATTCCATTTTTAACCTCAAACTTCCA
* *
181865 AAAATTCAATTTTTAACCCTAAAACTTCCA
1 AAAATTCCATTTTTAA-CCTCAAACTTCCA
* * *
181895 AAAA-TCACATTTTTACCCCTCAAACCTCTA
1 AAAATTC-CATTTTTA-ACCTCAAACTTCCA
* *
181925 AAAATTACA-TTTTGACCTCTAAACTTCCA
1 AAAATTCCATTTTTAACCTC-AAACTTCCA
* *
181954 AAAA-TCACATTTTT-ACCCCTAAATTTCCA
1 AAAATTC-CATTTTTAACCTC-AAACTTCCA
* *
181983 AAAATTACATTTTTAACATCAAAACTTCCA
1 AAAATTCCATTTTTAACCTC-AAACTTCCA
* * *
182013 AAAATTACCATTTTTAACCCCGAACTTCCC
1 AAAATT-CCATTTTTAACCTCAAACTTCCA
182043 AAAATTACCATTTT
1 AAAATT-CCATTTT
182057 GCCCCCCGTG
Statistics
Matches: 299, Mismatches: 53, Indels: 33
0.78 0.14 0.09
Matches are distributed among these distances:
28 5 0.02
29 128 0.43
30 154 0.52
31 12 0.04
ACGTcount: A:0.38, C:0.26, G:0.02, T:0.33
Consensus pattern (29 bp):
AAAATTCCATTTTTAACCTCAAACTTCCA
Found at i:181743 original size:59 final size:58
Alignment explanation
Indices: 181659--182056 Score: 483
Period size: 59 Copynumber: 6.7 Consensus size: 58
181649 AAACTGTTCG
* *
181659 AAAATTACATTTTTACCCTCAAACTTCCAAAAATTCCATTTTTGAACCTAAAACTTCCA
1 AAAATCACATTTTTACCCCCAAACTTCCAAAAATTCCATTTTT-AACCTAAAACTTCCA
* * *
181718 AAAATCACATTTTTACCCCCGAACTTCCAAAAATTCCATTTTTGACCTTGAAACTTCCA
1 AAAATCACATTTTTACCCCCAAACTTCCAAAAATTCCATTTTTAACC-TAAAACTTCCA
* *
181777 AAAATCACATTTTTACCCCCAAACTTCCAAAAGTTCCATTTTTAACCTTGAAACTTCCA
1 AAAATCACATTTTTACCCCCAAACTTCCAAAAATTCCATTTTTAACC-TAAAACTTCCA
* * * * *
181836 AAAATAACATTTTTAACCTCAAACTTCTAAAAATTCAATTTTTAACCCTAAAACTTCCA
1 AAAATCACATTTTTACCCCCAAACTTCCAAAAATTCCATTTTTAA-CCTAAAACTTCCA
* * * * *
181895 AAAATCACATTTTTACCCCTCAAACCTCTAAAAATTACA-TTTTGACCTCTAAACTTCCA
1 AAAATCACATTTTTACCCC-CAAACTTCCAAAAATTCCATTTTTAACCT-AAAACTTCCA
* * * *
181954 AAAATCACATTTTTACCCCTAAATTTCCAAAAATTACATTTTTAACATCAAAACTTCCA
1 AAAATCACATTTTTACCCCCAAACTTCCAAAAATTCCATTTTTAACCT-AAAACTTCCA
* * * *
182013 AAAATTACCATTTTTAACCCCGAACTTCCCAAAATTACCATTTT
1 AAAATCA-CATTTTTACCCCCAAACTTCCAAAAATT-CCATTTT
182057 GCCCCCCGTG
Statistics
Matches: 295, Mismatches: 37, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
58 21 0.07
59 227 0.77
60 41 0.14
61 6 0.02
ACGTcount: A:0.38, C:0.26, G:0.02, T:0.33
Consensus pattern (58 bp):
AAAATCACATTTTTACCCCCAAACTTCCAAAAATTCCATTTTTAACCTAAAACTTCCA
Found at i:192802 original size:201 final size:200
Alignment explanation
Indices: 192504--192890 Score: 614
Period size: 201 Copynumber: 1.9 Consensus size: 200
192494 TCAATGCGAA
* * *
192504 CAAATCTTTGATCCCCAACTTCCTGATGAGATACTGAGAAGCAGGACGAAGCAATAAAAGGTTAG
1 CAAATCTTCGAACCCCAACTTCCTAATGAGATACTGAGAAGCAGGACGAAGCAATAAAAGGTTAG
* *
192569 CTTCTTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCAGAT
66 CTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATAAGATACAGAGAAGCAGAT
192634 TGAAACAAGTAAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAGGGCTCGAT
131 TGAAACAAGTAAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAGGGCTCGAT
192699 GTGAG
196 GTGAG
* * * * *
192704 CAAATCTTCGAACCCCAACTTTCTAATGAGGTATTGCGAAGTA-GAGCGAAGCAATAAAAGGGTT
1 CAAATCTTCGAACCCCAACTTCCTAATGAGATACTGAGAAGCAGGA-CGAAGCAATAAAA-GGTT
* *
192768 AGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATAAGATACAGAGAAGCGG
64 AGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATAAGATACAGAGAAGCAG
* * *
192833 ATTGAAACAAGTGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTATATCAACTCA
129 ATTGAAACAAGTAAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCA
192891 ATGCGAACAA
Statistics
Matches: 170, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
199 2 0.01
200 48 0.28
201 120 0.71
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (200 bp):
CAAATCTTCGAACCCCAACTTCCTAATGAGATACTGAGAAGCAGGACGAAGCAATAAAAGGTTAG
CTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATAAGATACAGAGAAGCAGAT
TGAAACAAGTAAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAGGGCTCGAT
GTGAG
Found at i:193119 original size:261 final size:261
Alignment explanation
Indices: 192655--193199 Score: 878
Period size: 261 Copynumber: 2.1 Consensus size: 261
192645 AGGCGGTCAT
*
192655 CTTCCTGATGAGATACAGAGAAGAATACCAACTCAGGGCTCGATGTGAGCAAATCTTCGAACCCC
1 CTTCCTGATGAGATACAGAGAAGAATACCAACTCAAGGCTCGATGTGAGCAAATCTTCGAACCCC
* * * *
192720 AACTTTCTAATGAGGTATTGCGAAGTAGAGCGAAGCAATAAAAGGGTTAGCTTCCTGATGAGATA
66 AACTTTCTAATGAGATACTGCGAAGTAAAGCGAAGCAATAAAAAGGTTAGCTTCCTGATGAGATA
*
192785 CTGAGAAGTGGACCAAATTCGTCTTCCTGATAAGATACAGAGAAGCGGATTGAAACAAGTGAGGC
131 CTGAGAAGTGGACCAAATTCGTCTTCCTGATAAGATACAGAGAAGCAGATTGAAACAAGTGAGGC
* * *
192850 GGTCATCTTCCTGATGAGATACAGAGAAGTATATCAACTCAATGCGAACAAATCTTCGACC-CCT
196 GGTCATCTTCCTGATAAGATACAGAGAAGTATACCAACTCAATGCGAACAAATCTTCAACCTCC-
*
192914 AG
260 AA
* * *
192916 CTTCCTGATGAGATACAGAGAAGAATACCAACTCAAGGCTCGATGTGAGTAAATCTTTGAACCCT
1 CTTCCTGATGAGATACAGAGAAGAATACCAACTCAAGGCTCGATGTGAGCAAATCTTCGAACCCC
* * *
192981 AGC-TTCTTGATGAGATACTGCGAAGTAAAGCGAAGCAATAAAAAGGTTAGCTTTCTGATGAGAT
66 AACTTTC-TAATGAGATACTGCGAAGTAAAGCGAAGCAATAAAAAGGTTAGCTTCCTGATGAGAT
* *
193045 ACTGAGAAGTGGACCAGATTCGTCTTCCTGATGAGATACAGAGAAGCAGATTGAAACAAGTGAGG
130 ACTGAGAAGTGGACCAAATTCGTCTTCCTGATAAGATACAGAGAAGCAGATTGAAACAAGTGAGG
*
193110 CGGTCATCTTCCTGATAAGATATAGAGAAGTATACCAACTCAATGCGAACAAATCTTCAACCTCC
195 CGGTCATCTTCCTGATAAGATACAGAGAAGTATACCAACTCAATGCGAACAAATCTTCAACCTCC
193175 AA
260 AA
*
193177 CTTCCTGATGAGATACTGAGAAG
1 CTTCCTGATGAGATACAGAGAAG
193200 TAGAGCGAAG
Statistics
Matches: 262, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
260 3 0.01
261 257 0.98
262 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (261 bp):
CTTCCTGATGAGATACAGAGAAGAATACCAACTCAAGGCTCGATGTGAGCAAATCTTCGAACCCC
AACTTTCTAATGAGATACTGCGAAGTAAAGCGAAGCAATAAAAAGGTTAGCTTCCTGATGAGATA
CTGAGAAGTGGACCAAATTCGTCTTCCTGATAAGATACAGAGAAGCAGATTGAAACAAGTGAGGC
GGTCATCTTCCTGATAAGATACAGAGAAGTATACCAACTCAATGCGAACAAATCTTCAACCTCCA
A
Found at i:193272 original size:194 final size:194
Alignment explanation
Indices: 192983--193348 Score: 516
Period size: 194 Copynumber: 1.9 Consensus size: 194
192973 TGAACCCTAG
* * * * *
192983 CTTCTTGATGAGATACTGCGAAGTAAAGCGAAGCAATAAAAAGGTTAGCTTTCTGATGAGATACT
1 CTTCCTGATGAGATACTGAGAAGTAAAGCGAAGCAATAAAAAAGTTAGCTTCCTGATGAGATACG
* * * * * ** *
193048 GAGAAGTGGACCAGATTCGTCTTCCTGATGAGATACAGAGAAGCAGATTGAAACAAGTGAGGCGG
66 GAGAAGTGAACCAAATCCGTCTTCCTGATGAAACACAGAGAAGCAGATCAAAACAAGTGAGGCAG
* *
193113 TCATCTTCCTGATAAGATATAGAGAAGTATACCAACTCAATGCGAACAAATCTTCAACCTCCAA
131 TCATCTTCCTGATAAGATATAGAGAAGAAGACCAACTCAATGCGAACAAATCTTCAACCTCCAA
*
193177 CTTCCTGATGAGATACTGAGAAGTAGAGCGAAGCAATAAAAAAGTTAGCTTCCTGATGAGATACG
1 CTTCCTGATGAGATACTGAGAAGTAAAGCGAAGCAATAAAAAAGTTAGCTTCCTGATGAGATACG
* ** *
193242 GAGAAGTGAACCAAATCCGTCTTTCTGATGAAACACAGAGAAGTGGATCAAAACAAGTGATGCAG
66 GAGAAGTGAACCAAATCCGTCTTCCTGATGAAACACAGAGAAGCAGATCAAAACAAGTGAGGCAG
* * * *
193307 TCATCTTCTTGATGAGATATTGAGAAGAAGACCAAGTCAATG
131 TCATCTTCCTGATAAGATATAGAGAAGAAGACCAACTCAATG
193349 AAATCAGACT
Statistics
Matches: 148, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
194 148 1.00
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (194 bp):
CTTCCTGATGAGATACTGAGAAGTAAAGCGAAGCAATAAAAAAGTTAGCTTCCTGATGAGATACG
GAGAAGTGAACCAAATCCGTCTTCCTGATGAAACACAGAGAAGCAGATCAAAACAAGTGAGGCAG
TCATCTTCCTGATAAGATATAGAGAAGAAGACCAACTCAATGCGAACAAATCTTCAACCTCCAA
Found at i:193739 original size:12 final size:12
Alignment explanation
Indices: 193731--193797 Score: 59
Period size: 11 Copynumber: 5.7 Consensus size: 12
193721 CAAATTTATT
193731 TTTAAATTTAAA
1 TTTAAATTTAAA
193743 TTT--ATCTTAAA
1 TTTAAAT-TTAAA
**
193754 TTTAAATTTATCT
1 TTTAAATTTA-AA
193767 TTTAAATTTAAA
1 TTTAAATTTAAA
*
193779 TTT-AATTAAAA
1 TTTAAATTTAAA
*
193790 TTCAAATT
1 TTTAAATT
193798 GATTTACAAC
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
10 2 0.05
11 17 0.39
12 13 0.30
13 12 0.27
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTAAATTTAAA
Found at i:193740 original size:6 final size:6
Alignment explanation
Indices: 193731--193797 Score: 59
Period size: 6 Copynumber: 11.3 Consensus size: 6
193721 CAAATTTATT
**
193731 TTTAAA TTTAAA TTT--A TCTTAAA TTTAAA TTTATCT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA T-TTAAA TTTAAA TTTA-AA TTTAAA TTTAAA
* *
193779 TTT-AA TTAAAA TTCAAA TT
1 TTTAAA TTTAAA TTTAAA TT
193798 GATTTACAAC
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
4 2 0.04
5 6 0.12
6 36 0.72
7 6 0.12
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (6 bp):
TTTAAA
Found at i:193791 original size:36 final size:35
Alignment explanation
Indices: 193718--193802 Score: 118
Period size: 36 Copynumber: 2.4 Consensus size: 35
193708 TTTTAAATTG
*
193718 ATTCAAATTTATTTTTAAATTTAAATTTATCTTAA
1 ATTCAAATTTATTTTTAAATTTAAATTTATCTAAA
*
193753 ATTTAAATTTATCTTTTAAATTTAAATTTAAT-TAAA
1 ATTCAAATTTAT-TTTTAAATTTAAATTT-ATCTAAA
*
193789 ATTCAAATTGATTT
1 ATTCAAATTTATTT
193803 ACAACTTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
35 13 0.30
36 29 0.66
37 2 0.05
ACGTcount: A:0.41, C:0.05, G:0.01, T:0.53
Consensus pattern (35 bp):
ATTCAAATTTATTTTTAAATTTAAATTTATCTAAA
Found at i:195626 original size:29 final size:29
Alignment explanation
Indices: 195566--195998 Score: 399
Period size: 29 Copynumber: 14.8 Consensus size: 29
195556 GGAGGTCCCT
* * *
195566 AAACTATCCTAAAATTACATTTTT-ACCTC
1 AAACT-TCCAAAAATTCCATTTTTAACCCC
* *
195595 GAACTTCCAAAAATTCTATTTTTAACCCC
1 AAACTTCCAAAAATTCCATTTTTAACCCC
*
195624 GAAACTTCCATAAA-TCACATTTTT-ACCCC
1 -AAACTTCCAAAAATTC-CATTTTTAACCCC
195653 TAAACTTCCAAAAATTCCATTTTTAACCCCC
1 -AAACTTCCAAAAATTCCATTTTTAA-CCCC
* *
195684 AAAACTTCCAAAAA-TCACAATTTT-ACCCTT
1 -AAACTTCCAAAAATTC-CATTTTTAACCC-C
*
195714 AAACTTCCAAAAATTCCATTTTTGACCCC
1 AAACTTCCAAAAATTCCATTTTTAACCCC
*
195743 GAAACTTCCAAAAATTACATTTTT-ACCCTC
1 -AAACTTCCAAAAATTCCATTTTTAACCC-C
*
195773 GAACTTCCAAAAATTCCA-TTTTAACCCC
1 AAACTTCCAAAAATTCCATTTTTAACCCC
*
195801 AAAACTTCCAAAAA-TCACA-TTTTACCCCTC
1 -AAACTTCCAAAAATTC-CATTTTTAACCC-C
* * * *
195831 AAACCTCCAAAAATTCTATTTTTGACACCG
1 AAACTTCCAAAAATTCCATTTTTAAC-CCC
195861 AAACTTCCAAAAA-TCACATTTTT-ACCCC
1 AAACTTCCAAAAATTC-CATTTTTAACCCC
*
195889 TAAATTTCCAAAAATTCCA-TTTTAACCCC
1 -AAACTTCCAAAAATTCCATTTTTAACCCC
* *
195918 AAACTTCCAAAAA-TCATATTTTTACCCCC
1 AAACTTCCAAAAATTC-CATTTTTAACCCC
* * *
195947 GAACTTCCAAAAATTCCA-TTTTGACCTCA
1 AAACTTCCAAAAATTCCATTTTTAACC-CC
195976 AAACTTCCAAAAATTACCATTTT
1 AAACTTCCAAAAATT-CCATTTT
195999 GCCCCAAAGT
Statistics
Matches: 337, Mismatches: 38, Indels: 56
0.78 0.09 0.13
Matches are distributed among these distances:
27 2 0.01
28 47 0.14
29 175 0.52
30 85 0.25
31 28 0.08
ACGTcount: A:0.37, C:0.29, G:0.02, T:0.32
Consensus pattern (29 bp):
AAACTTCCAAAAATTCCATTTTTAACCCC
Found at i:195660 original size:59 final size:59
Alignment explanation
Indices: 195566--195998 Score: 547
Period size: 59 Copynumber: 7.4 Consensus size: 59
195556 GGAGGTCCCT
* * * * *
195566 AAACTATCCTAAAATTACATTTTTACCTC-GAACTTCCAAAAATTCTATTTTTAACCCCG
1 AAACT-TCCAAAAATCACATTTTTACCCCTAAACTTCCAAAAATTCCATTTTTAACCCCG
* *
195625 AAACTTCCATAAATCACATTTTTACCCCTAAACTTCCAAAAATTCCATTTTTAACCCCCA
1 AAACTTCCAAAAATCACATTTTTACCCCTAAACTTCCAAAAATTCCATTTTTAA-CCCCG
* * *
195685 AAACTTCCAAAAATCACAATTTTACCCTTAAACTTCCAAAAATTCCATTTTTGACCCCG
1 AAACTTCCAAAAATCACATTTTTACCCCTAAACTTCCAAAAATTCCATTTTTAACCCCG
* * *
195744 AAACTTCCAAAAATTACATTTTTA-CCCTCGAACTTCCAAAAATTCCA-TTTTAACCCCA
1 AAACTTCCAAAAATCACATTTTTACCCCT-AAACTTCCAAAAATTCCATTTTTAACCCCG
* * * *
195802 AAACTTCCAAAAATCACA-TTTTACCCCTCAAACCTCCAAAAATTCTATTTTTGACACCG
1 AAACTTCCAAAAATCACATTTTTACCCCT-AAACTTCCAAAAATTCCATTTTTAACCCCG
*
195861 AAACTTCCAAAAATCACATTTTTACCCCTAAATTTCCAAAAATTCCA-TTTTAACCCC-
1 AAACTTCCAAAAATCACATTTTTACCCCTAAACTTCCAAAAATTCCATTTTTAACCCCG
* ** * * *
195918 AAACTTCCAAAAATCATATTTTTACCCCCGAACTTCCAAAAATTCCA-TTTTGACCTCA
1 AAACTTCCAAAAATCACATTTTTACCCCTAAACTTCCAAAAATTCCATTTTTAACCCCG
*
195976 AAACTTCCAAAAATTACCATTTT
1 AAACTTCCAAAAATCA-CATTTT
195999 GCCCCAAAGT
Statistics
Matches: 328, Mismatches: 38, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
57 56 0.17
58 91 0.28
59 117 0.36
60 64 0.20
ACGTcount: A:0.37, C:0.29, G:0.02, T:0.32
Consensus pattern (59 bp):
AAACTTCCAAAAATCACATTTTTACCCCTAAACTTCCAAAAATTCCATTTTTAACCCCG
Found at i:195862 original size:117 final size:117
Alignment explanation
Indices: 195566--195998 Score: 597
Period size: 117 Copynumber: 3.7 Consensus size: 117
195556 GGAGGTCCCT
* * * * *
195566 AAACTATCCTAAAATTACATTTTTA-CCTCGAACTTCCAAAAATTCTATTTTTAACCCCGAAACT
1 AAACT-TCCAAAAATCACATTTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCCGAAACT
*
195630 TCCATAAATCACATTTTTACCCCTAAACTTCCAAAAATTCCATTTTTAACCCCCA
65 TCCAAAAATCACATTTTTACCCCTAAACTTCCAAAAATTCCA-TTTTAA-CCCCA
* *
195685 AAACTTCCAAAAATCACAATTTTACCCTTAAACTTCCAAAAATTCCATTTTTGACCCCGAAACTT
1 AAACTTCCAAAAATCACATTTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCCGAAACTT
* *
195750 CCAAAAATTACATTTTTA-CCCTCGAACTTCCAAAAATTCCATTTTAACCCCA
66 CCAAAAATCACATTTTTACCCCT-AAACTTCCAAAAATTCCATTTTAACCCCA
* * *
195802 AAACTTCCAAAAATCACA-TTTTACCCCTCAAACCTCCAAAAATTCTATTTTTGACACCGAAACT
1 AAACTTCCAAAAATCACATTTTTA-CCCTCAAACTTCCAAAAATTCCATTTTTGACCCCGAAACT
*
195866 TCCAAAAATCACATTTTTACCCCTAAATTTCCAAAAATTCCATTTTAACCCC-
65 TCCAAAAATCACATTTTTACCCCTAAACTTCCAAAAATTCCATTTTAACCCCA
* * * * *
195918 AAACTTCCAAAAATCATATTTTTACCCCCGAACTTCCAAAAATTCCA-TTTTGACCTCAAAACTT
1 AAACTTCCAAAAATCACATTTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCCGAAACTT
*
195982 CCAAAAATTACCATTTT
66 CCAAAAATCA-CATTTT
195999 GCCCCAAAGT
Statistics
Matches: 282, Mismatches: 26, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
115 23 0.08
116 47 0.17
117 108 0.38
118 30 0.11
119 74 0.26
ACGTcount: A:0.37, C:0.29, G:0.02, T:0.32
Consensus pattern (117 bp):
AAACTTCCAAAAATCACATTTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCCGAAACTT
CCAAAAATCACATTTTTACCCCTAAACTTCCAAAAATTCCATTTTAACCCCA
Found at i:202578 original size:6 final size:6
Alignment explanation
Indices: 202567--202631 Score: 73
Period size: 6 Copynumber: 11.3 Consensus size: 6
202557 ATTGGGTATT
* **
202567 TTTAAA TTTAAA TTT-AT TTTAAA TTTAAA TTT-GC TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
202613 TTT-AA TTAAAA TTTAAA TT
1 TTTAAA TTTAAA TTTAAA TT
202632 GATTTAAAAC
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
5 11 0.23
6 37 0.77
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:202588 original size:17 final size:17
Alignment explanation
Indices: 202566--202636 Score: 97
Period size: 17 Copynumber: 4.2 Consensus size: 17
202556 GATTGGGTAT
202566 TTTTAAATTTAAATTTA
1 TTTTAAATTTAAATTTA
*
202583 TTTTAAATTTAAATTTG
1 TTTTAAATTTAAATTTA
*
202600 CTTTAAATTTAAATTTA
1 TTTTAAATTTAAATTTA
* * *
202617 ATTAAAATTTAAATTGA
1 TTTTAAATTTAAATTTA
202634 TTT
1 TTT
202637 AAAACTTAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 47 1.00
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (17 bp):
TTTTAAATTTAAATTTA
Found at i:202606 original size:34 final size:33
Alignment explanation
Indices: 202567--202656 Score: 110
Period size: 34 Copynumber: 2.7 Consensus size: 33
202557 ATTGGGTATT
* * *
202567 TTTAAATTTAAATTTATTTTAAATTTAAATTTGC
1 TTTAAATTTAAATTTAATTAAAATTTAAA-TTGA
202601 TTTAAATTTAAATTTAATTAAAATTTAAATTGA
1 TTTAAATTTAAATTTAATTAAAATTTAAATTGA
* *
202634 TTTAAAACTT-AATTAAATTAAAA
1 TTT-AAATTTAAATTTAATTAAAA
202657 GTCCAAAAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
33 18 0.36
34 32 0.64
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (33 bp):
TTTAAATTTAAATTTAATTAAAATTTAAATTGA
Found at i:202619 original size:11 final size:11
Alignment explanation
Indices: 202571--202628 Score: 55
Period size: 11 Copynumber: 5.2 Consensus size: 11
202561 GGTATTTTTA
202571 AATTTAAATTT
1 AATTTAAATTT
*
202582 ATTTTAAATTT
1 AATTTAAATTT
**
202593 AAATTT-GCTTT
1 -AATTTAAATTT
202604 AAATTTAAATTT
1 -AATTTAAATTT
*
202616 AATTAAAATTT
1 AATTTAAATTT
202627 AA
1 AA
202629 ATTGATTTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
11 31 0.82
12 7 0.18
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (11 bp):
AATTTAAATTT
Found at i:202638 original size:17 final size:17
Alignment explanation
Indices: 202570--202645 Score: 82
Period size: 17 Copynumber: 4.5 Consensus size: 17
202560 GGGTATTTTT
* *
202570 AAATTTAAATTTATTTT
1 AAATTTAAATTGATTTA
*
202587 AAATTTAAATTTGCTTT-
1 AAATTTAAA-TTGATTTA
* *
202604 AAATTTAAATTTAATTA
1 AAATTTAAATTGATTTA
202621 AAATTTAAATTGATTTA
1 AAATTTAAATTGATTTA
*
202638 AAACTTAA
1 AAATTTAA
202646 TTAAATTAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
16 4 0.08
17 40 0.82
18 5 0.10
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (17 bp):
AAATTTAAATTGATTTA
Found at i:202654 original size:16 final size:17
Alignment explanation
Indices: 202608--202656 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
202598 TGCTTTAAAT
* *
202608 TTAAATTTAATTAAAAT
1 TTAAATTAAATTAAAAC
* *
202625 TTAAATTGATTTAAAAC
1 TTAAATTAAATTAAAAC
202642 TT-AATTAAATTAAAA
1 TTAAATTAAATTAAAA
202657 GTCCAAAAAC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
16 11 0.41
17 16 0.59
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (17 bp):
TTAAATTAAATTAAAAC
Found at i:202887 original size:47 final size:47
Alignment explanation
Indices: 202815--202906 Score: 175
Period size: 47 Copynumber: 2.0 Consensus size: 47
202805 NNNNNNNNNN
202815 GCCCAATCACAAATACAAACCCAAGACTAGCCCAATGACCCAATTTG
1 GCCCAATCACAAATACAAACCCAAGACTAGCCCAATGACCCAATTTG
*
202862 GCCCAATCACAAATACAAACTCAAGACTAGCCCAATGACCCAATT
1 GCCCAATCACAAATACAAACCCAAGACTAGCCCAATGACCCAATT
202907 ACACCCAACC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.41, C:0.34, G:0.10, T:0.15
Consensus pattern (47 bp):
GCCCAATCACAAATACAAACCCAAGACTAGCCCAATGACCCAATTTG
Found at i:203505 original size:9 final size:9
Alignment explanation
Indices: 203493--203531 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
203483 AAGTTATCAT
203493 TATTATTAA
1 TATTATTAA
203502 TATTATTAA
1 TATTATTAA
203511 TATTAATTTAA
1 TATT-A-TTAA
*
203522 TAATATTAA
1 TATTATTAA
203531 T
1 T
203532 GACCATAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 18 0.67
10 2 0.07
11 7 0.26
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
TATTATTAA
Found at i:204797 original size:30 final size:29
Alignment explanation
Indices: 204751--205048 Score: 275
Period size: 30 Copynumber: 10.1 Consensus size: 29
204741 GAAAGTCCCA
**
204751 TTTTACCCTC-AAACTTCCAAAAATTGAAT
1 TTTTACCC-CAAAACTTCCAAAAATTCCAT
*
204780 TTTTGACCCCAAAACTTCCCAAAATTCCATT
1 TTTT-ACCCCAAAACTTCCAAAAATTCCA-T
*
204811 TTTTACCCCAAAACTTCTAAAAATTCCAT
1 TTTTACCCCAAAACTTCCAAAAATTCCAT
* *
204840 TTTTACACTC-GAACTTCCAAAAATTCCAT
1 TTTTAC-CCCAAAACTTCCAAAAATTCCAT
* *
204869 TTTTGACCTCAAAACTTCCAAAAATTCCAA
1 TTTT-ACCCCAAAACTTCCAAAAATTCCAT
*
204899 TTTTACCCTC-GAACTTCCAAAAATTCCATT
1 TTTTACCC-CAAAACTTCCAAAAATTCCA-T
*
204929 TTTTACCTCAAAACTTCCAAAAATTCCAT
1 TTTTACCCCAAAACTTCCAAAAATTCCAT
* * * *
204958 TTTTACCCTCGAATC-TCTAAAATTTCCAT
1 TTTTACCC-CAAAACTTCCAAAAATTCCAT
* **
204987 TTTTGACCCCGAAACTTTAAAAAATTACCAT
1 TTTT-ACCCCAAAACTTCCAAAAATT-CCAT
** *
205018 TTTT-CCCCAGGA-TGTCCAAAAACTCCAT
1 TTTTACCCCAAAACT-TCCAAAAATTCCAT
205046 TTT
1 TTT
205049 CAACCTAAAA
Statistics
Matches: 225, Mismatches: 30, Indels: 29
0.79 0.11 0.10
Matches are distributed among these distances:
28 8 0.04
29 98 0.44
30 106 0.47
31 13 0.06
ACGTcount: A:0.34, C:0.28, G:0.04, T:0.35
Consensus pattern (29 bp):
TTTTACCCCAAAACTTCCAAAAATTCCAT
Found at i:204883 original size:89 final size:87
Alignment explanation
Indices: 204751--205021 Score: 307
Period size: 89 Copynumber: 3.0 Consensus size: 87
204741 GAAAGTCCCA
** * *
204751 TTTTACCCTCAAACTTCCAAAAATTGAATTTTTGACCCCAAAACTTCCCAAAATTCCATTTTTTA
1 TTTTA-CCTCAAACTTCCAAAAATTCCATTTTTGACCTCAAAACTTCCAAAAATTCCATTTTTTA
204816 CCCCAAAACTTCTAAAAATTCCAT
65 CCCC-AAACTTCTAAAAATTCCAT
* *
204840 TTTTACACTCGAACTTCCAAAAATTCCATTTTTGACCTCAAAACTTCCAAAAATTCCA-ATTTTA
1 TTTTAC-CTCAAACTTCCAAAAATTCCATTTTTGACCTCAAAACTTCCAAAAATTCCATTTTTTA
* *
204904 CCCTCGAACTTCCAAAAATTCCATT
65 CCC-CAAACTTCTAAAAATTCCA-T
* * * * *
204929 TTTTACCTCAAAACTTCCAAAAATTCCATTTTT-ACCCTCGAATC-TCTAAAATTTCCATTTTTG
1 TTTTACCTC-AAACTTCCAAAAATTCCATTTTTGA-CCTCAAAACTTCCAAAAATTCCATTTTTT
204992 ACCCCGAAACTT-TAAAAAATTACCAT
64 ACCCC-AAACTTCT-AAAAATT-CCAT
205018 TTTT
1 TTTT
205022 CCCCAGGATG
Statistics
Matches: 156, Mismatches: 17, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
88 41 0.26
89 112 0.72
90 3 0.02
ACGTcount: A:0.35, C:0.27, G:0.03, T:0.35
Consensus pattern (87 bp):
TTTTACCTCAAACTTCCAAAAATTCCATTTTTGACCTCAAAACTTCCAAAAATTCCATTTTTTAC
CCCAAACTTCTAAAAATTCCAT
Found at i:205036 original size:118 final size:118
Alignment explanation
Indices: 204792--205117 Score: 360
Period size: 118 Copynumber: 2.8 Consensus size: 118
204782 TTGACCCCAA
* * * *
204792 AACTTCCCAAAATTCCATTTTTTACCCCAAAACTTCTAAAAATTCCATTTTTACACTCGAA-CTT
1 AACTTCCAAAAATTCCATTTTTTACCTCAAAACTTCCAAAAATTCCATTTTTACCCTCGAATC-T
* * *
204856 CCAAAAATTCCATTTTTGACCTCAAAACTTCCAAAAATTCCAATTTTACCCTCG
65 CTAAAAATTCCATTTTTGACCCCAAAACTTCAAAAAATTCCAATTTTACCCTCG
204910 AACTTCCAAAAATTCCATTTTTTACCTCAAAACTTCCAAAAATTCCATTTTTACCCTCGAATCTC
1 AACTTCCAAAAATTCCATTTTTTACCTCAAAACTTCCAAAAATTCCATTTTTACCCTCGAATCTC
* * * *
204975 TAAAATTTCCATTTTTGACCCCGAAACTTTAAAAAATTACC-ATTTTTCCC-CAG
66 TAAAAATTCCATTTTTGACCCCAAAACTTCAAAAAATT-CCAATTTTACCCTC-G
* * ** * * *
205028 GA-TGTCCAAAAACTCCATTTTCAACCTAAAAAC-TCTC-AAAATTACC-CTTTTACCCCCCGAA
1 AACT-TCCAAAAATTCCATTTTTTACCTCAAAACTTC-CAAAAATT-CCATTTTTA-CCCTCGAA
* *
205089 TGTCTAAAAATTCCATTTTTAACCCCAAA
62 TCTCTAAAAATTCCATTTTTGACCCCAAA
205118 TTTGCCAAAA
Statistics
Matches: 179, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
117 15 0.08
118 161 0.90
119 3 0.02
ACGTcount: A:0.35, C:0.29, G:0.03, T:0.33
Consensus pattern (118 bp):
AACTTCCAAAAATTCCATTTTTTACCTCAAAACTTCCAAAAATTCCATTTTTACCCTCGAATCTC
TAAAAATTCCATTTTTGACCCCAAAACTTCAAAAAATTCCAATTTTACCCTCG
Found at i:205048 original size:59 final size:59
Alignment explanation
Indices: 204761--205021 Score: 328
Period size: 59 Copynumber: 4.4 Consensus size: 59
204751 TTTTACCCTC
** * * *
204761 AAACTTCCAAAAATTGAATTTTTGACCC-CAAAACTTCCCAAAATTCCATTTTTTACCCCA
1 AAACTTCCAAAAATTCCATTTTT-ACCCTC-GAACTTCCAAAAATTCCATTTTTGACCCCA
* * *
204821 AAACTTCTAAAAATTCCATTTTTACACTCGAACTTCCAAAAATTCCATTTTTGACCTCA
1 AAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATTCCATTTTTGACCCCA
* * *
204880 AAACTTCCAAAAATTCCAATTTTACCCTCGAACTTCCAAAAATTCCATTTTTTACCTCA
1 AAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATTCCATTTTTGACCCCA
* * *
204939 AAACTTCCAAAAATTCCATTTTTACCCTCGAA-TCTCTAAAATTTCCATTTTTGACCCCG
1 AAACTTCCAAAAATTCCATTTTTACCCTCGAACT-TCCAAAAATTCCATTTTTGACCCCA
**
204998 AAACTTTAAAAAATTACCATTTTT
1 AAACTTCCAAAAATT-CCATTTTT
205022 CCCCAGGATG
Statistics
Matches: 178, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
58 1 0.01
59 148 0.83
60 29 0.16
ACGTcount: A:0.36, C:0.26, G:0.03, T:0.35
Consensus pattern (59 bp):
AAACTTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATTCCATTTTTGACCCCA
Found at i:205127 original size:59 final size:58
Alignment explanation
Indices: 204800--205131 Score: 239
Period size: 59 Copynumber: 5.6 Consensus size: 58
204790 AAAACTTCCC
* * * * *
204800 AAAATTCCATTTTTTACCCCAAAACTTCTAAAAATT-CCATTTTTACACTCGAACT-TCCA
1 AAAATTCCA-TTTTTAACCCAAAACTTC-CAAAATTACCAATTTTACCCCCGAA-TGTCCA
* *
204859 AAAATTCCATTTTTGACCTCAAAACTTCCAAAAATT-CCAATTTTACCCTCGAACT-TCCA
1 AAAATTCCATTTTTAACC-CAAAACTTCC-AAAATTACCAATTTTACCCCCGAA-TGTCCA
* * * * *
204918 AAAATTCCATTTTTTACCTCAAAACTTCCAAAAATT-CCATTTTTACCCTCGAATCTCTA
1 AAAATTCCATTTTTAACC-CAAAACTTCC-AAAATTACCAATTTTACCCCCGAATGTCCA
* * * ** * * *
204977 AAATTTCCATTTTTGACCCCGAAACTTTAAAAAATTACC-ATTTTTCCCCAGGATGTCCA
1 AAAATTCCATTTTT-AACCCAAAAC-TTCCAAAATTACCAATTTTACCCCCGAATGTCCA
* * * * *
205036 AAAACTCCATTTTCAACCTAAAAAC-TCTCAAAATTACC-CTTTTACCCCCCGAATGTCTA
1 AAAATTCCATTTTTAACC-CAAAACTTC-CAAAATTACCAATTTTA-CCCCCGAATGTCCA
* *
205095 AAAATTCCATTTTTAACCCCAAATTTGCCAAAATTAC
1 AAAATTCCATTTTTAACCCAAAACTT-CCAAAATTAC
205132 TATTTTGCCC
Statistics
Matches: 223, Mismatches: 39, Indels: 22
0.79 0.14 0.08
Matches are distributed among these distances:
57 1 0.00
58 27 0.12
59 188 0.84
60 7 0.03
ACGTcount: A:0.35, C:0.28, G:0.04, T:0.33
Consensus pattern (58 bp):
AAAATTCCATTTTTAACCCAAAACTTCCAAAATTACCAATTTTACCCCCGAATGTCCA
Found at i:226276 original size:30 final size:29
Alignment explanation
Indices: 226224--226555 Score: 236
Period size: 29 Copynumber: 11.3 Consensus size: 29
226214 GAAAATCTCA
* * *
226224 TTTTACCCTCTAACTTCCAAAAATTGCAT
1 TTTTACCCCCGAACTTCCAAAAATTCCAT
* * *
226253 TTTTGA-CCTCGAAACTTCAAAAAATTCTAT
1 TTTT-ACCCCCG-AACTTCCAAAAATTCCAT
226283 TTTTACCCCCGAACTTCCAAAAATTCCAT
1 TTTTACCCCCGAACTTCCAAAAATTCCAT
*
226312 TTTGA-CCCCGAAACTTCCAAAAATTCCAT
1 TTTTACCCCCG-AACTTCCAAAAATTCCAT
*
226341 TTTTACCCTCGAACTTCCAAAAATTCCAT
1 TTTTACCCCCGAACTTCCAAAAATTCCAT
** *
226370 TTTTA-CCCTTAAATCTCCAAAAATTCCAT
1 TTTTACCCCCGAACT-TCCAAAAATTCCAT
* *
226399 TTTTACCCCCGAA-TCTCTAAAATTTCCAT
1 TTTTACCCCCGAACT-TCCAAAAATTCCAT
* ** * *
226428 TTTTAACCTCAAAACTTTCAAAAAAATACCA-
1 TTTT-ACCCCCGAAC-TTC-CAAAAATTCCAT
* **
226459 TTTTACCCCCGAA-TGTCCAAAAACTATAT
1 TTTTACCCCCGAACT-TCCAAAAATTCCAT
* *
226488 TTTTGA-CCTCGAAAC-TCTC-AAAATTACC-C
1 TTTT-ACCCCCG-AACTTC-CAAAAATT-CCAT
*
226517 TTTTACCCCCGAA-TGTCTAAAAATTCCAT
1 TTTTACCCCCGAACT-TCCAAAAATTCCAT
*
226546 TTTTAACCCC
1 TTTTACCCCC
226556 AAATTTTCCG
Statistics
Matches: 239, Mismatches: 41, Indels: 46
0.73 0.13 0.14
Matches are distributed among these distances:
28 22 0.09
29 153 0.64
30 49 0.21
31 6 0.03
32 9 0.04
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.34
Consensus pattern (29 bp):
TTTTACCCCCGAACTTCCAAAAATTCCAT
Found at i:226318 original size:58 final size:59
Alignment explanation
Indices: 226239--226549 Score: 318
Period size: 58 Copynumber: 5.3 Consensus size: 59
226229 CCCTCTAACT
* *
226239 TCCAAAAATTGCATTTTTGACCTCGAAACTTCAAAAAATTCTATTTTTACCCCCGAACT-
1 TCCAAAAATTCCATTTTTGACCTCGAAACTTCAAAAAATTCCATTTTTACCCCCGAA-TG
* * *
226298 TCCAAAAATTCCA-TTTTGACCCCGAAACTTCCAAAAATTCCATTTTTACCCTCGAACT-
1 TCCAAAAATTCCATTTTTGACCTCGAAACTTCAAAAAATTCCATTTTTACCCCCGAA-TG
* * *
226356 TCCAAAAATTCCATTTTT-ACC-CTTAAA-TCTCCAAAAATTCCATTTTTACCCCCGAATC
1 TCCAAAAATTCCATTTTTGACCTC-GAAACT-TCAAAAAATTCCATTTTTACCCCCGAATG
* * * * *
226414 TCTAAAATTTCCATTTTTAACCTCAAAACTTTCAAAAAAATACCA-TTTTACCCCCGAATG
1 TCCAAAAATTCCATTTTTGACCTCGAAAC-TTC-AAAAAATTCCATTTTTACCCCCGAATG
* ** *
226474 TCCAAAAACTATATTTTTGACCTCGAAACTCTC--AAAATTACC-CTTTTACCCCCGAATG
1 TCCAAAAATTCCATTTTTGACCTCGAAACT-TCAAAAAATT-CCATTTTTACCCCCGAATG
*
226532 TCTAAAAATTCCATTTTT
1 TCCAAAAATTCCATTTTT
226550 AACCCCAAAT
Statistics
Matches: 215, Mismatches: 25, Indels: 25
0.81 0.09 0.09
Matches are distributed among these distances:
57 8 0.04
58 133 0.62
59 23 0.11
60 41 0.19
61 10 0.05
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.34
Consensus pattern (59 bp):
TCCAAAAATTCCATTTTTGACCTCGAAACTTCAAAAAATTCCATTTTTACCCCCGAATG
Found at i:226374 original size:87 final size:86
Alignment explanation
Indices: 226239--226555 Score: 286
Period size: 87 Copynumber: 3.6 Consensus size: 86
226229 CCCTCTAACT
* *
226239 TCCAAAAATTGCATTTTTGA-CCTCGAAACTTCAAAAAATTCTATTTTTACCCCCGAA-CTTCCA
1 TCCAAAAATTCCATTTTT-ACCCTCG-AACTTCAAAAAATTCCATTTTTACCCCCGAATC-TCCA
226302 AAAATTCCATTTTGACCCCGAAAC
63 AAAATTCCATTTTGACCCCGAAAC
* ***
226326 TTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATTCCATTTTTACCCTTAAATCTCCAAA
1 -TCCAAAAATTCCATTTTTACCCTCGAACTTCAAAAAATTCCATTTTTACCCCCGAATCTCCAAA
* *
226391 AATTCCATTTTTACCCCCGAATC
65 AATTCCATTTTGA-CCCCGAAAC
* * * * * *
226414 TCTAAAATTTCCATTTTTAACCTCAAAACTTTCAAAAAAATACCA-TTTTACCCCCGAATGTCCA
1 TCCAAAAATTCCATTTTTACCCTC-GAAC-TTC-AAAAAATTCCATTTTTACCCCCGAATCTCCA
* ** *
226478 AAAACTATATTTTTGACCTCGAAAC
63 AAAATTCCA-TTTTGACCCCGAAAC
* * * *
226503 TCTC-AAAATTACC-CTTTTACCCCCGAA-TGTCTAAAAATTCCATTTTTAACCCC
1 TC-CAAAAATT-CCATTTTTACCCTCGAACT-TCAAAAAATTCCATTTTTACCCCC
226556 AAATTTTCCG
Statistics
Matches: 185, Mismatches: 33, Indels: 23
0.77 0.14 0.10
Matches are distributed among these distances:
86 10 0.05
87 77 0.42
88 36 0.19
89 46 0.25
90 16 0.09
ACGTcount: A:0.34, C:0.28, G:0.04, T:0.33
Consensus pattern (86 bp):
TCCAAAAATTCCATTTTTACCCTCGAACTTCAAAAAATTCCATTTTTACCCCCGAATCTCCAAAA
ATTCCATTTTGACCCCGAAAC
Found at i:228809 original size:30 final size:29
Alignment explanation
Indices: 228744--228821 Score: 111
Period size: 29 Copynumber: 2.7 Consensus size: 29
228734 TGTTTTGTCT
* * *
228744 AAAAATTACATTTCGACCCTCGAACTTTC
1 AAAAATCACATTTTGACCCCCGAACTTTC
228773 AAAAATCACATTTTGACCCCCGAACTTTC
1 AAAAATCACATTTTGACCCCCGAACTTTC
*
228802 AAAAAATCATATTTTGACCC
1 -AAAAATCACATTTTGACCC
228822 TTAAATTTCC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
29 26 0.59
30 18 0.41
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.29
Consensus pattern (29 bp):
AAAAATCACATTTTGACCCCCGAACTTTC
Found at i:228837 original size:30 final size:30
Alignment explanation
Indices: 228744--228845 Score: 91
Period size: 29 Copynumber: 3.4 Consensus size: 30
228734 TGTTTTGTCT
* * * *
228744 AAAAATTACATTTCGACCCTCGAACTTT-C
1 AAAAATCACATTTTGACCCCCGAAATTTCC
* *
228773 AAAAATCACATTTTGACCCCCGAACTTTCA
1 AAAAATCACATTTTGACCCCCGAAATTTCC
* **
228803 AAAAATCATATTTTGA-CCCTTAAATTTCCC
1 AAAAATCACATTTTGACCCCCGAAATTT-CC
*
228833 AAAAATTACATTT
1 AAAAATCACATTT
228846 CAACTCTAAA
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
29 33 0.55
30 27 0.45
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.32
Consensus pattern (30 bp):
AAAAATCACATTTTGACCCCCGAAATTTCC
Found at i:228931 original size:31 final size:30
Alignment explanation
Indices: 228812--228967 Score: 124
Period size: 29 Copynumber: 5.2 Consensus size: 30
228802 AAAAAATCAT
* * *
228812 ATTTTGACCCTTAAA-TTTCCCAAAAATTAC
1 ATTTTAACCCTAAAACTTTTCC-AAAATTAC
* * **
228842 ATTTCAACTCT-AAACTTCTT-CAAAATTGT
1 ATTTTAACCCTAAAACTT-TTCCAAAATTAC
*
228871 ATTTTAA-CCTCAAACTCTTT-CAAAATTAC
1 ATTTTAACCCTAAAACT-TTTCCAAAATTAC
* * *
228900 ATTTTAACCCTTACAATTTTTCCCAAATTAC
1 ATTTTAACCC-TAAAACTTTTCCAAAATTAC
*
228931 ATTTTAACCCTAAAACTTTTCTAAAATTAC
1 ATTTTAACCCTAAAACTTTTCCAAAATTAC
228961 TATTTTA
1 -ATTTTA
228968 CCTCCAAATT
Statistics
Matches: 100, Mismatches: 18, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
28 2 0.02
29 36 0.36
30 33 0.33
31 29 0.29
ACGTcount: A:0.36, C:0.22, G:0.01, T:0.41
Consensus pattern (30 bp):
ATTTTAACCCTAAAACTTTTCCAAAATTAC
Found at i:228984 original size:28 final size:29
Alignment explanation
Indices: 228961--229016 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
228951 CTAAAATTAC
*
228961 TATTTT-ACCTCCAAATTTCCAAAAGTCA
1 TATTTTCACCTCAAAATTTCCAAAAGTCA
228989 TATTTTCGACCTCAAAATTTCCAAAAGT
1 TATTTTC-ACCTCAAAATTTCCAAAAGT
229017 TTGATTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 6 0.24
30 19 0.76
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (29 bp):
TATTTTCACCTCAAAATTTCCAAAAGTCA
Found at i:233226 original size:24 final size:24
Alignment explanation
Indices: 233207--233259 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
233197 AGCAAATTCG
233207 AAAAG-AGATGCAGGAACAAATGC
1 AAAAGCAGATGCAGGAACAAATGC
* * *
233230 AAGAGCAGTTGCAGGAACAAAGTAC
1 AAAAGCAGATGCAGGAACAAA-TGC
233255 AAAAG
1 AAAAG
233260 AATTTAATGA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 4 0.17
24 14 0.58
25 6 0.25
ACGTcount: A:0.51, C:0.13, G:0.26, T:0.09
Consensus pattern (24 bp):
AAAAGCAGATGCAGGAACAAATGC
Found at i:241378 original size:39 final size:38
Alignment explanation
Indices: 241329--241699 Score: 149
Period size: 39 Copynumber: 9.6 Consensus size: 38
241319 ATCTGATTTT
* *
241329 TTACCTCGAGCCTGAGGTAAATCACCATCAGCGAATCTC
1 TTACCCCGAGCCTGAGGCAAATCACCATCA-CGAATCTC
* * * *
241368 TTACCCCGAGCCTGGGGAAAATTGCAGCCATC-TG-ATCTT
1 TTACCCCGAGCCTGAGGCAAA-T-CA-CCATCACGAATCTC
* * * * * *
241407 TTACCTCGAGCTTGGGGCAGATCACCATCAGCCAAACTC
1 TTACCCCGAGCCTGAGGCAAATCACCATCA-CGAATCTC
* * *
241446 TTACCCCAAGCC-GAGGTAAATTGCAGCCATC-CG-ATCTT
1 TTACCCCGAGCCTGAGGCAAA-T-CA-CCATCACGAATCTC
* * * *
241484 TTACCCCGAGCCTAAGGCAGATTACTATCA-GTTAATCTC
1 TTACCCCGAGCCTGAGGCAAATCACCATCACG--AATCTC
* * *
241523 TTACCTCGAGCCTAAGGCAGATTGCAGCCAT-ACGATAT-T-
1 TTACCCCGAGCCTGAGGCA-AAT-CA-CCATCACGA-ATCTC
* *
241562 TTACCCCGAGCTTG-GG-ATAGATCACCATCAGCCAATCTC
1 TTACCCCGAGCCTGAGGCA-A-ATCACCATCA-CGAATCTC
* * * * * *
241601 TTACTCCAAGCTTGGGGCAAATTACAGCTATC-CG-ATCTT
1 TTACCCCGAGCCTGAGGCAAA-T-CA-CCATCACGAATCTC
* * * *
241640 TTA-CCCGAGCTTGGGGTAAATCACCATCAACCAATCTC
1 TTACCCCGAGCCTGAGGCAAATCACCATC-ACGAATCTC
241678 TTACCCCGAGCCTGAGGCAAAT
1 TTACCCCGAGCCTGAGGCAAAT
241700 TGCAGTCATC
Statistics
Matches: 245, Mismatches: 54, Indels: 66
0.67 0.15 0.18
Matches are distributed among these distances:
35 4 0.02
36 16 0.07
37 12 0.05
38 48 0.20
39 126 0.51
40 12 0.05
41 14 0.06
42 13 0.05
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.25
Consensus pattern (38 bp):
TTACCCCGAGCCTGAGGCAAATCACCATCACGAATCTC
Found at i:241447 original size:78 final size:77
Alignment explanation
Indices: 241305--241738 Score: 456
Period size: 78 Copynumber: 5.6 Consensus size: 77
241295 AATCAAGAAG
* * * * * * * * *
241305 GGCAGATTGAAGCCATCTGATTTTTTACCTCGAGCCTGAGGTAAATCACCATCAGCGAATCTCTT
1 GGCAAATTGCAGCCATCCGATCTTTTACC-CGAGCTTGGGGCAGATCACCATCAGCCAATCTCTT
*
241370 ACCCCGAGCCTGG
65 ACCCCGAGCCTGA
* * *
241383 GGAAAATTGCAGCCATCTGATCTTTTACCTCGAGCTTGGGGCAGATCACCATCAGCCAAACTCTT
1 GGCAAATTGCAGCCATCCGATCTTTTACC-CGAGCTTGGGGCAGATCACCATCAGCCAATCTCTT
*
241448 ACCCCAAGCC-GA
65 ACCCCGAGCCTGA
* * ** * * **
241460 GGTAAATTGCAGCCATCCGATCTTTTACCCCGAGCCTAAGGCAGATTACTATCAGTTAATCTCTT
1 GGCAAATTGCAGCCATCCGATCTTTTA-CCCGAGCTTGGGGCAGATCACCATCAGCCAATCTCTT
* *
241525 ACCTCGAGCCTAA
65 ACCCCGAGCCTGA
* * * **
241538 GGCAGATTGCAGCCATACGATATTTTACCCCGAGCTTGGGATAGATCACCATCAGCCAATCTCTT
1 GGCAAATTGCAGCCATCCGATCTTTTA-CCCGAGCTTGGGGCAGATCACCATCAGCCAATCTCTT
* * * *
241603 ACTCCAAGCTTGG
65 ACCCCGAGCCTGA
* * * * *
241616 GGCAAATTACAGCTATCCGATCTTTTACCCGAGCTTGGGGTAAATCACCATCAACCAATCTCTTA
1 GGCAAATTGCAGCCATCCGATCTTTTACCCGAGCTTGGGGCAGATCACCATCAGCCAATCTCTTA
241681 CCCCGAGCCTGA
66 CCCCGAGCCTGA
* *
241693 GGCAAATTGCAGTCATCCGATCTTTTACCCTGAGCTTGGGCCAGAT
1 GGCAAATTGCAGCCATCCGATCTTTTACCC-GAGCTTGGGGCAGAT
241739 TATAGCCATC
Statistics
Matches: 291, Mismatches: 62, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
77 131 0.45
78 160 0.55
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (77 bp):
GGCAAATTGCAGCCATCCGATCTTTTACCCGAGCTTGGGGCAGATCACCATCAGCCAATCTCTTA
CCCCGAGCCTGA
Found at i:241721 original size:39 final size:39
Alignment explanation
Indices: 241363--241759 Score: 141
Period size: 39 Copynumber: 10.2 Consensus size: 39
241353 CCATCAGCGA
* * * * *
241363 ATCTCTTACCCCGAGCCTGGGGAAAATTGCAGCCATCTG
1 ATCTTTTACCCCGAGCCTGAGGCAAATTGCAGTCATCCG
* * * * ** * *
241402 ATCTTTTACCTCGAGCTTGGGGCAGATCACCA-TCAGCCA
1 ATCTTTTACCCCGAGCCTGAGGCAAAT-TGCAGTCATCCG
* * * * *
241441 AACTCTTACCCCAAGCC-GAGGTAAATTGCAGCCATCCG
1 ATCTTTTACCCCGAGCCTGAGGCAAATTGCAGTCATCCG
* * * **
241479 ATCTTTTACCCCGAGCCTAAGGCAGATTACTA-TCAGT-TA
1 ATCTTTTACCCCGAGCCTGAGGCAAATTGC-AGTCA-TCCG
* * * * * *
241518 ATCTCTTACCTCGAGCCTAAGGCAGATTGCAGCCATACG
1 ATCTTTTACCCCGAGCCTGAGGCAAATTGCAGTCATCCG
* * ** * *
241557 ATATTTTACCCCGAGCTTG-GG-ATAGATCACCA-TCAGCCA
1 ATCTTTTACCCCGAGCCTGAGGCA-A-AT-TGCAGTCATCCG
* * * * * *
241596 ATCTCTTACTCCAAGCTTGGGGCAAATTACAG-CTATCCG
1 ATCTTTTACCCCGAGCCTGAGGCAAATTGCAGTC-ATCCG
* * * ** * *
241635 ATCTTTTA-CCCGAGCTTGGGGTAAATCACCA-TCAACCA
1 ATCTTTTACCCCGAGCCTGAGGCAAAT-TGCAGTCATCCG
*
241673 ATCTCTTACCCCGAGCCTGAGGCAAATTGCAGTCATCCG
1 ATCTTTTACCCCGAGCCTGAGGCAAATTGCAGTCATCCG
* * * ** *
241712 ATCTTTTACCCTGAGCTTG-GGCCAGATTATAGCCATCCG
1 ATCTTTTACCCCGAGCCTGAGG-CAAATTGCAGTCATCCG
241751 ATCTTTTAC
1 ATCTTTTAC
241760 TCCAAGCTTG
Statistics
Matches: 256, Mismatches: 83, Indels: 38
0.68 0.22 0.10
Matches are distributed among these distances:
37 3 0.01
38 60 0.23
39 183 0.71
40 9 0.04
41 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (39 bp):
ATCTTTTACCCCGAGCCTGAGGCAAATTGCAGTCATCCG
Found at i:241760 original size:155 final size:155
Alignment explanation
Indices: 241315--241774 Score: 512
Period size: 155 Copynumber: 3.0 Consensus size: 155
241305 GGCAGATTGA
* * *
241315 AGCCATCTGATTTTTTACCTCGAGCCTGAGGTAAATCACCATCAGCGAATCTCTTACCCCGAGCC
1 AGCCATCCGATCTTTTACC-CGAGCCTGAGGTAAATCACCATCAGCCAATCTCTTACCCCGAGCC
* * * * *
241380 TGGGGAAAATTGCAGCCATCTGATCTTTTA-CCTCGAGCTTGGGGCAGATCACCATCAGCCAAAC
65 TGAGGCAAATTGCAGCCATCCGATCTTTTACCCT-GAGCTTGGGACAGATCACCATCAGCCAATC
* * * * *
241444 TCTTACCCCAAGC-CGAGGTAAATTGC
129 TCTTACTCCAAGCTTGGGGCAAATTAC
* * * * * ** *
241470 AGCCATCCGATCTTTTACCCCGAGCCTAAGGCAGATTACTATCAGTTAATCTCTTACCTCGAGCC
1 AGCCATCCGATCTTTTA-CCCGAGCCTGAGGTAAATCACCATCAGCCAATCTCTTACCCCGAGCC
* * * * * *
241535 TAAGGCAGATTGCAGCCATACGATATTTTACCCCGAGCTTGGGATAGATCACCATCAGCCAATCT
65 TGAGGCAAATTGCAGCCATCCGATCTTTTACCCTGAGCTTGGGACAGATCACCATCAGCCAATCT
241600 CTTACTCCAAGCTTGGGGCAAATTAC
130 CTTACTCCAAGCTTGGGGCAAATTAC
* * * *
241626 AGCTATCCGATCTTTTACCCGAGCTTGGGGTAAATCACCATCAACCAATCTCTTACCCCGAGCCT
1 AGCCATCCGATCTTTTACCCGAGCCTGAGGTAAATCACCATCAGCCAATCTCTTACCCCGAGCCT
* * * * * * *
241691 GAGGCAAATTGCAGTCATCCGATCTTTTACCCTGAGCTTGGGCCAGATTA-TAGCCATCCGATCT
66 GAGGCAAATTGCAGCCATCCGATCTTTTACCCTGAGCTTGGGACAGATCACCA-TCAGCCAATCT
*
241755 TTTACTCCAAGCTTGGGGCA
130 CTTACTCCAAGCTTGGGGCA
241775 GATCACCATC
Statistics
Matches: 249, Mismatches: 52, Indels: 8
0.81 0.17 0.03
Matches are distributed among these distances:
154 1 0.00
155 219 0.88
156 29 0.12
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (155 bp):
AGCCATCCGATCTTTTACCCGAGCCTGAGGTAAATCACCATCAGCCAATCTCTTACCCCGAGCCT
GAGGCAAATTGCAGCCATCCGATCTTTTACCCTGAGCTTGGGACAGATCACCATCAGCCAATCTC
TTACTCCAAGCTTGGGGCAAATTAC
Done.