Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013178.1 Kokia drynarioides strain JFW-HI SEQ_128197, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2303
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.29


Found at i:341 original size:45 final size:45

Alignment explanation


    Indices: 205--330  Score: 207
    Period size: 45  Copynumber: 2.8  Consensus size: 45

        195 GCATAGCTCA

                                                         
        205 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                                   *                     
        250 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                 **           *  *              
        295 TCAAGGGAAGGATATCAGGCTGAGTTTGACGAGCCA
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCA

        331 TCACGATACT


Statistics
Matches: 75,  Mismatches: 6, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  45   75  1.00

ACGTcount: A:0.32, C:0.27, G:0.23, T:0.18


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

Found at i:369 original size:21 final size:21

Alignment explanation


    Indices: 336--378  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        326 AGCCATCACG

                    *            
        336 ATACTCTATTCCTCCCGGGCA
          1 ATACTCTACTCCTCCCGGGCA

                 *         *     
        357 ATACTTTACTCCTCCGGGGCA
          1 ATACTCTACTCCTCCCGGGCA

             
        378 A
          1 A

        379 ATGGACCCTA


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.21, C:0.35, G:0.16, T:0.28


Consensus pattern (21 bp):   
ATACTCTACTCCTCCCGGGCA
Done.