Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013183.1 Kokia drynarioides strain JFW-HI SEQ_128202, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 808

Length: 1348
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.33


Found at i:650 original size:38 final size:40

Alignment explanation


    Indices: 597--686  Score: 130
    Period size: 38  Copynumber: 2.3  Consensus size: 40

        587 AAAAATTGTA

                    *       *                        
        597 TTTAATTACAATAAAATATTTATTATATTTAT-TT-GTGTT
          1 TTTAA-TATAATAAAACATTTATTATATTTATGTTAGTGTT

                                *                   
        636 TTTAATATAATAAAACATTTGTTATATTTATGTTAGTGTT
          1 TTTAATATAATAAAACATTTATTATATTTATGTTAGTGTT

                       
        676 TTTAATATAAT
          1 TTTAATATAAT

        687 TATTTTTGAT


Statistics
Matches: 46,  Mismatches: 3, Indels: 3
        0.88            0.06        0.06

Matches are distributed among these distances:
  38   23  0.50
  39    7  0.15
  40   16  0.35

ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54


Consensus pattern (40 bp):   
TTTAATATAATAAAACATTTATTATATTTATGTTAGTGTT

Done.